PI0023936 (gene) Melon (PI 482460) v1

Overview


Name	PI0023936
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr11: 12499505 .. 12499780 (+)
RNA-Seq Expression	PI0023936
Synteny	PI0023936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTCGTAGAGTATGAGAAAATTTTTGCTGAATTGGCTAAGTATGTGTTAGCCTTTGTGATTGATGAGACAGATAAATGCAAATGGTTTGAAGATGGTTTGCGAACGAAAATTAGAGCCCTAATGACGACCAACATGGACTGGTCAGATTTCTCCAAATTAGTTGAAACTGCCATGAGAGTTGAGAAGTGTTTGGCAAAGGAAAAGAAAAACAAGAATGCAAATGAAGGCCCATGCGTTCAAAATGGTAGTAACGTGCGAGGTGGTGAGTGA

mRNA sequence

ATGATCGTCGTAGAGTATGAGAAAATTTTTGCTGAATTGGCTAAGTATGTGTTAGCCTTTGTGATTGATGAGACAGATAAATGCAAATGGTTTGAAGATGGTTTGCGAACGAAAATTAGAGCCCTAATGACGACCAACATGGACTGGTCAGATTTCTCCAAATTAGTTGAAACTGCCATGAGAGTTGAGAAGTGTTTGGCAAAGGAAAAGAAAAACAAGAATGCAAATGAAGGCCCATGCGTTCAAAATGGTAGTAACGTGCGAGGTGGTGAGTGA

Coding sequence (CDS)

ATGATCGTCGTAGAGTATGAGAAAATTTTTGCTGAATTGGCTAAGTATGTGTTAGCCTTTGTGATTGATGAGACAGATAAATGCAAATGGTTTGAAGATGGTTTGCGAACGAAAATTAGAGCCCTAATGACGACCAACATGGACTGGTCAGATTTCTCCAAATTAGTTGAAACTGCCATGAGAGTTGAGAAGTGTTTGGCAAAGGAAAAGAAAAACAAGAATGCAAATGAAGGCCCATGCGTTCAAAATGGTAGTAACGTGCGAGGTGGTGAGTGA

Protein sequence

MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE

Homology

[Close]

BLAST of PI0023936 vs. ExPASy TrEMBL
Match: A0A5A7V3F2 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00210 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
          M V EYEK F ELAKY LAFV++E DKCK FE+GLRT+IRAL+T +MDWSDFSKLVE  M
Sbjct: 1  MTVTEYEKWFTELAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVM 60

Query: 61 RVEKCLAKEKKNKNANEGPCVQNGSNVRGGE 92
           VEKC+ ++KKN    + PC Q+ S++R GE
Sbjct: 61 SVEKCMVEDKKNNFFKKDPCSQSFSSIRSGE 91

[Close]

BLAST of PI0023936 vs. ExPASy TrEMBL
Match: A0A5A7V373 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003760 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
          + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AM
Sbjct: 8  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 67

Query: 61 RVEKCLAKEKKNKNANEGPCVQNGSNVR 89
          RVE+C+  +KKNK + + PC Q+  ++R
Sbjct: 68 RVERCMEVDKKNKISKKDPCGQSFGSMR 95

[Close]

BLAST of PI0023936 vs. ExPASy TrEMBL
Match: A0A5D3BZ05 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002070 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1   MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
           + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AM
Sbjct: 95  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 154

Query: 61  RVEKCLAKEKKNKNANEGPCVQNGSNVR 89
           RVE+C+  +KKNK + + PC Q+  ++R
Sbjct: 155 RVERCMEVDKKNKISKKDPCGQSFGSMR 182

[Close]

BLAST of PI0023936 vs. ExPASy TrEMBL
Match: A0A5D3D2P1 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00770 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
           M ++EYEK F ELAKY L FV DE DKCK FE+G+RT+IRA +T NMDWS+ SK+V+ AM
Sbjct: 86  MAIIEYEKRFIELAKYALVFVTDEVDKCKRFEEGMRTEIRAPVTANMDWSNLSKMVKVAM 145

Query: 61  RVEKCLAKEKKNK 74
           RVEK +  +KKNK
Sbjct: 146 RVEKRMVDDKKNK 158

[Close]

BLAST of PI0023936 vs. ExPASy TrEMBL
Match: A0A5D3DEF9 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00160 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.6e-14
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 22 IDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCV 81
          +DE DKCK F+DGL+T+IRAL+   M+ SDFSKLVE A+RVE+C+A EKKNK   E PC 
Sbjct: 1  MDEIDKCKRFKDGLQTEIRALVAAIMNKSDFSKLVEVAIRVERCMADEKKNKIVKEKPCG 60

Query: 82 QNGSNVRGGE 92
          Q+ S +RG E
Sbjct: 61 QSTSGMRGSE 70

[Close]

BLAST of PI0023936 vs. NCBI nr
Match: KAA0062762.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-23
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
          M V EYEK F ELAKY LAFV++E DKCK FE+GLRT+IRAL+T +MDWSDFSKLVE  M
Sbjct: 1  MTVTEYEKWFTELAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVM 60

Query: 61 RVEKCLAKEKKNKNANEGPCVQNGSNVRGGE 92
           VEKC+ ++KKN    + PC Q+ S++R GE
Sbjct: 61 SVEKCMVEDKKNNFFKKDPCSQSFSSIRSGE 91

[Close]

BLAST of PI0023936 vs. NCBI nr
Match: KAA0062038.1 (hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 5.4e-19
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
          + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AM
Sbjct: 8  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 67

Query: 61 RVEKCLAKEKKNKNANEGPCVQNGSNVR 89
          RVE+C+  +KKNK + + PC Q+  ++R
Sbjct: 68 RVERCMEVDKKNKISKKDPCGQSFGSMR 95

[Close]

BLAST of PI0023936 vs. NCBI nr
Match: TYK04983.1 (uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 5.4e-19
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1   MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
           + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AM
Sbjct: 95  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 154

Query: 61  RVEKCLAKEKKNKNANEGPCVQNGSNVR 89
           RVE+C+  +KKNK + + PC Q+  ++R
Sbjct: 155 RVERCMEVDKKNKISKKDPCGQSFGSMR 182

[Close]

BLAST of PI0023936 vs. NCBI nr
Match: KAA0031989.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK16809.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAM 60
           M ++EYEK F ELAKY L FV DE DKCK FE+G+RT+IRA +T NMDWS+ SK+V+ AM
Sbjct: 86  MAIIEYEKRFIELAKYALVFVTDEVDKCKRFEEGMRTEIRAPVTANMDWSNLSKMVKVAM 145

Query: 61  RVEKCLAKEKKNK 74
           RVEK +  +KKNK
Sbjct: 146 RVEKRMVDDKKNK 158

[Close]

BLAST of PI0023936 vs. NCBI nr
Match: TYK21986.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 22 IDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCV 81
          +DE DKCK F+DGL+T+IRAL+   M+ SDFSKLVE A+RVE+C+A EKKNK   E PC 
Sbjct: 1  MDEIDKCKRFKDGLQTEIRALVAAIMNKSDFSKLVEVAIRVERCMADEKKNKIVKEKPCG 60

Query: 82 QNGSNVRGGE 92
          Q+ S +RG E
Sbjct: 61 QSTSGMRGSE 70

The following BLAST results are available for this feature:

BLAST of PI0023936 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3F2	1.7e-23	63.74	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V373	2.6e-19	60.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZ05	2.6e-19	60.23	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D2P1	1.4e-17	64.38	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3DEF9	9.6e-14	61.43	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0023936 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062762.1	3.6e-23	63.74	zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC...	[more]
KAA0062038.1	5.4e-19	60.23	hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]	[more]
TYK04983.1	5.4e-19	60.23	uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]	[more]
KAA0031989.1	3.0e-17	64.38	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK16809.1 putative...	[more]
TYK21986.1	2.0e-13	61.43	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0023936 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023936.1	PI0023936.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups