PI0005241 (gene) Melon (PI 482460) v1

Overview
NamePI0005241
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr11: 12472519 .. 12472800 (+)
RNA-Seq ExpressionPI0005241
SyntenyPI0005241
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCTCCATTTCTCTACACTACACCTATGTCCACTGGCCCTATATTTCCCATAATGTCGATTCCTTTTCTAATGTCAAATTCCATCATTACCAATGGATTGTGGAGCCCTTGCAATATACTAATTTCACACGGATAGAGCTTTGTGATCAACAAAGTCGGTCAATCATGCATGATCCTCCAGAGTGCCACTGGAAAGCTCCAGCGTATTTTAAACTATCTAAAAGTGTTACTCAACCATCGTGTTATTTGCCGTTCAGGTCTATATATCACTTCATAG

mRNA sequence

ATGCATGCTCCATTTCTCTACACTACACCTATGTCCACTGGCCCTATATTTCCCATAATGTCGATTCCTTTTCTAATGTCAAATTCCATCATTACCAATGGATTCTTTGTGATCAACAAAGTCGGTCAATCATGCATGATCCTCCAGAGTGCCACTGGAAAGCTCCAGCGTATTTTAAACTATCTAAAAGTGTTACTCAACCATCGTGTTATTTGCCGTTCAGGTCTATATATCACTTCATAG

Coding sequence (CDS)

ATGCATGCTCCATTTCTCTACACTACACCTATGTCCACTGGCCCTATATTTCCCATAATGTCGATTCCTTTTCTAATGTCAAATTCCATCATTACCAATGGATTCTTTGTGATCAACAAAGTCGGTCAATCATGCATGATCCTCCAGAGTGCCACTGGAAAGCTCCAGCGTATTTTAAACTATCTAAAAGTGTTACTCAACCATCGTGTTATTTGCCGTTCAGGTCTATATATCACTTCATAG

Protein sequence

MHAPFLYTTPMSTGPIFPIMSIPFLMSNSIITNGFFVINKVGQSCMILQSATGKLQRILNYLKVLLNHRVICRSGLYITS
Homology
[Close]
BLAST of PI0005241 vs. ExPASy TrEMBL
Match: A0A0A0KAH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127370 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.8e-23
Identity = 67/93 (72.04%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 1  MHAPFLYTTPMSTGPIFPIMSIPFLMSNSIITNGF-------------FVINKVGQSCMI 60
          MHAPFLYTTPMSTGP+F IMSI FLMSNSIITN               FVINKVGQS MI
Sbjct: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60

Query: 61 LQSATGKLQRILNYLKVLLNHRVICRSGLYITS 81
          LQ ATGKLQRILN L+VL NH  ICRS LYITS
Sbjct: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 93

[Close]
BLAST of PI0005241 vs. NCBI nr
Match: KGN46725.1 (hypothetical protein Csa_020748 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 67/93 (72.04%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 1  MHAPFLYTTPMSTGPIFPIMSIPFLMSNSIITNGF-------------FVINKVGQSCMI 60
          MHAPFLYTTPMSTGP+F IMSI FLMSNSIITN               FVINKVGQS MI
Sbjct: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60

Query: 61 LQSATGKLQRILNYLKVLLNHRVICRSGLYITS 81
          LQ ATGKLQRILN L+VL NH  ICRS LYITS
Sbjct: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 93

The following BLAST results are available for this feature:
BLAST of PI0005241 vs.
Match NameE-valueIdentityDescription
BLAST of PI0005241 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAH05.8e-2372.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127370 PE=4 SV=1[more]
BLAST of PI0005241 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46725.11.2e-2272.04hypothetical protein Csa_020748 [Cucumis sativus][more]
BLAST of PI0005241 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005241.1PI0005241.1mRNA