PI0005241.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0005241.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 12472519 .. 12472800 (+)
Sequence length	243
RNA-Seq Expression	PI0005241.1
Synteny	PI0005241.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTCCATTTCTCTACACTACACCTATGTCCACTGGCCCTATATTTCCCATAATGTCGATTCCTTTTCTAATGTCAAATTCCATCATTACCAATGGATTGTGGAGCCCTTGCAATATACTAATTTCACACGGATAGAGCTTTGTGATCAACAAAGTCGGTCAATCATGCATGATCCTCCAGAGTGCCACTGGAAAGCTCCAGCGTATTTTAAACTATCTAAAAGTGTTACTCAACCATCGTGTTATTTGCCGTTCAGGTCTATATATCACTTCATAG

mRNA sequence

ATGCATGCTCCATTTCTCTACACTACACCTATGTCCACTGGCCCTATATTTCCCATAATGTCGATTCCTTTTCTAATGTCAAATTCCATCATTACCAATGGATTCTTTGTGATCAACAAAGTCGGTCAATCATGCATGATCCTCCAGAGTGCCACTGGAAAGCTCCAGCGTATTTTAAACTATCTAAAAGTGTTACTCAACCATCGTGTTATTTGCCGTTCAGGTCTATATATCACTTCATAG

Coding sequence (CDS)

ATGCATGCTCCATTTCTCTACACTACACCTATGTCCACTGGCCCTATATTTCCCATAATGTCGATTCCTTTTCTAATGTCAAATTCCATCATTACCAATGGATTCTTTGTGATCAACAAAGTCGGTCAATCATGCATGATCCTCCAGAGTGCCACTGGAAAGCTCCAGCGTATTTTAAACTATCTAAAAGTGTTACTCAACCATCGTGTTATTTGCCGTTCAGGTCTATATATCACTTCATAG

Protein sequence

MHAPFLYTTPMSTGPIFPIMSIPFLMSNSIITNGFFVINKVGQSCMILQSATGKLQRILNYLKVLLNHRVICRSGLYITS

Homology

[Close]

BLAST of PI0005241.1 vs. ExPASy TrEMBL
Match: A0A0A0KAH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127370 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.8e-23
Identity = 67/93 (72.04%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MHAPFLYTTPMSTGPIFPIMSIPFLMSNSIITNGF-------------FVINKVGQSCMI 60
          MHAPFLYTTPMSTGP+F IMSI FLMSNSIITN               FVINKVGQS MI
Sbjct: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60

Query: 61 LQSATGKLQRILNYLKVLLNHRVICRSGLYITS 81
          LQ ATGKLQRILN L+VL NH  ICRS LYITS
Sbjct: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 93

[Close]

BLAST of PI0005241.1 vs. NCBI nr
Match: KGN46725.1 (hypothetical protein Csa_020748 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 67/93 (72.04%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MHAPFLYTTPMSTGPIFPIMSIPFLMSNSIITNGF-------------FVINKVGQSCMI 60
          MHAPFLYTTPMSTGP+F IMSI FLMSNSIITN               FVINKVGQS MI
Sbjct: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60

Query: 61 LQSATGKLQRILNYLKVLLNHRVICRSGLYITS 81
          LQ ATGKLQRILN L+VL NH  ICRS LYITS
Sbjct: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 93

The following BLAST results are available for this feature:

BLAST of PI0005241.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005241.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH0	5.8e-23	72.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127370 PE=4 SV=1	[more]

BLAST of PI0005241.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46725.1	1.2e-22	72.04	hypothetical protein Csa_020748 [Cucumis sativus]	[more]

BLAST of PI0005241.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0005241	PI0005241	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0005241.1-exon	PI0005241.1-exon-chr11:12472519..12472622	exon
PI0005241.1-exon	PI0005241.1-exon-chr11:12472662..12472800	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0005241.1-cds	PI0005241.1-cds-chr11:12472519..12472622	CDS
PI0005241.1-cds	PI0005241.1-cds-chr11:12472662..12472800	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0005241.1	PI0005241.1-protein	polypeptide