Moc06g18520 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g18520
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Copia-type polyprotein
Location	chr6: 14458681 .. 14461252 (-)
RNA-Seq Expression	Moc06g18520
Synteny	Moc06g18520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACTCTTCTCTTTCTCTTGGTTTCTCTTGTTCAAGTTCCACCATTACCGGTGTACAGACATCTTGATGCTCTTGGACTATTTGTGGAGTCTGTGTCTTTTTCTTGTACACAACAGATGATAAAATCGGCTCTCAGTAGAGGCAAAGGCTTCTTCAGCGTGATAAAGAGTGTACTGACTACTGCATTAGAGGCAGTAGAATCTTTAGTGGATCGGGTTGATGCTGTTTTAAACATGTATTATTCTAGATACATTATGCATATACATTCCTAGGTATATGATACATGTACATGAACTAGTACATTCATGTATTTAGATAAGCTAATTGTGTGTTCATGTATGTATAGATTCATAGGATGGAGTTTATGGATCTAGATTCTTCCACAGAGTCTTACAAATAGGATGATCTCTTGTTATATTTCAAGCAAGTGTGTGGAGAAGAAAAACAAGAGAGTTTGTGAATCAAGTGTGTATTTGGTGAGAAATTTTTCAATACAAGTGAAGTTGTTTATTCTCAAACGGGTCTTGTTGATTCTAAATTAGCAAGTGTCCATCACACGCTTCCAATAAAGTGGTATCAGAGACTGAGTTTGAAAAGAGTTGTTTTTTGCAAATGGCAAACAACAATTTAGATCCATTCCAAGTGCCTCGTCTTACCTAAGAAAATTATAGCAGTTGGTGTATTCGTATGAAGGCTTTACTTGGTTCACAAGATGCATGGGAGATTGTTGATAGAGGCTATGAAGAACCAACAGAGGATGTGGCTTTGAATCAAGCTCAACGAGAGACTTTGCAAAATAATAGAAAGAAAGACCAAAAGGCTCTCACCATTATTCATCAAGCCATTGATGATTCAAATTTTGAGAAGATTTCTGGAGCAACTAACGCAATGCAAGCATGACAAATTTTGGAGAATACTTATAAAGGGGTTGATCGGGTCAAGAAGGTCCGACTTCAAAAATTGAAAGGTGATTATGAAGCATTACATATGAAGGAGTCTGAATCAATTTCAAATTACACTTCAAGGTTGCTAGCTGTGGTAAATGAAATGAAGCGGTATGGTGAGACGATAAATGATGAGCAAGTAGTTGAAAAGATACTTCGCTCATTTGATGAAAAATTTAATTTCATCGTTGTAGCAATTGAAGAATCAAAGGATTTGAGTACAGTGTCCGTTGATCAACTTATAGGTACTTTGCAAGCCCATGAAGAGAAGCTTTTCAAGAAGAGCAAACAGACAACCGAACAACTCTTTCAATCAAAGTTGCAGTTGAAGATAAAGAAGATAGCCAAGAAAGAGGTTATCGAGGTCATGGTCGTGGTAGAAGTCATGGACGTGGTGGCTTCAGAGGTCATGGTCGAGGAAACTTTGGTCAAAGAAAGTTTGATGGGAGTAATTTCAACTCCAATTTGTCAAGAGGTCGTGGCAGACAAAATTGTTCGAGGTCGTATGGAGGAAAGTCAAATGATGATAGGAGGTATGACAAAAGCCGAGTTGAATGTTATAATTGTTATAAATTCGATCATTATTCCTCGGAGTGCAGAAATAAAGTAGAAGAAAATGTCAATTACGTTGAAGAAGATGTTAAAAGCAGTGAACCATCATTGCTTTTAGCATGCAGAGATGAAGAAACATGTGAGAACAGTTTGTGGTATCTTGATAGTGGTGCAAACAACCACATGTGCGGAAGCAAATCCATGTTCGTGGAATTGGATGAATCTGTTGGTGGCAATATCATATTTGGTGATGCTACAAAAATCCCTGTAAAAGGAAAAGGTAAGATTTTTATCAATTTGAAAAACGGGAAGCATTAGTTTATCTCTAATGTCTATTATGTGCCAAATATGAAGAACAATATTTTGAGTTTGGGACAACTCTTGGAGAAAGACTACAATATTTTGACGAAAGATTATAGTCTTTCAATATGAGATCATCATGACAATATGATTGCTAAAGTCCAAATGACGAAGAATAGAATGTTTCCATTAAACATTCAAACTGATGTTACAAAATGTTTGAAGTCGTGTTTAAAAGATTCATCATGGATTTGGCACTTAAGACTTGGGCATTTGAACTTTGATGGCTTAAGATTATTATCCAGGAAGGGCATGGTGAAAGGATTGCCATATGTCAAGCATCCAGATCAACTTTGTGAAGGATGTCTGCTTGCCAAGTGTCACAATCGCACCTTTTCGAAGCAGCTCGAGCGATTGTGCGGCACTTGCTCTAGCTCAAACGAGCAAGTCAGCCAGGAAAAACTGTAAGTTGCGGACAATCTCGGTCGTGGGTCTAGCCTCCGCTCACGTTTTAGGAGAAAATTGGTTTTAGAAAACGTGAGAGAGAAAAACAGTTGAAAACATCTTTAAAACAAGCATTGTAGACATTGGATGCAAGAAAGCTTTGATTGCAAGAAAGTATACAACACTTGGTCGGGGGGAGGTTTGATGACTACTTGGTCCCCCCTAAGGTACATTATAAGGCATTTTTGGTGTGGCAGGTGTAGACGTCCTAAGTGGCGAGGAGTCACTCGGTGGCCTACAGGGCCCGTGTGAACTCCGATTGGCTTGA

mRNA sequence

ATGCTTACTCTTCTCTTTCTCTTGGTTTCTCTTGTTCAAGTTCCACCATTACCGGTGTACAGACATCTTGATGCTCTTGGACTATTTGTGGAGTCTGTGTCTTTTTCTTGTACACAACAGATGATAAAATCGGCTCTCAGTAGAGGCAAAGGCTTCTTCAGCGTGATAAAGAGTGTACTGACTACTGCATTAGAGGCAGTAGAATCTTTAGTGGATCGGGTTGATGCTGTTTTAAACATAGGTCATGGTCGAGGAAACTTTGGTCAAAGAAAGTTTGATGGGAGTAATTTCAACTCCAATTTGTCAAGAGGTCGTGGCAGACAAAATTGTTCGAGGTCGTATGGAGGAAAGTCAAATGATGATAGGAGCATCCAGATCAACTTTGTGAAGGATGTCTGCTTGCCAAGTGTCACAATCGCACCTTTTCGAAGCAGCTCGAGCGATTGTGCGGCACTTGCTCTAGCTCAAACGAGCAAGTCAGCCAGGAAAAACTGTGTAGACGTCCTAAGTGGCGAGGAGTCACTCGGTGGCCTACAGGGCCCGTGTGAACTCCGATTGGCTTGA

Coding sequence (CDS)

ATGCTTACTCTTCTCTTTCTCTTGGTTTCTCTTGTTCAAGTTCCACCATTACCGGTGTACAGACATCTTGATGCTCTTGGACTATTTGTGGAGTCTGTGTCTTTTTCTTGTACACAACAGATGATAAAATCGGCTCTCAGTAGAGGCAAAGGCTTCTTCAGCGTGATAAAGAGTGTACTGACTACTGCATTAGAGGCAGTAGAATCTTTAGTGGATCGGGTTGATGCTGTTTTAAACATAGGTCATGGTCGAGGAAACTTTGGTCAAAGAAAGTTTGATGGGAGTAATTTCAACTCCAATTTGTCAAGAGGTCGTGGCAGACAAAATTGTTCGAGGTCGTATGGAGGAAAGTCAAATGATGATAGGAGCATCCAGATCAACTTTGTGAAGGATGTCTGCTTGCCAAGTGTCACAATCGCACCTTTTCGAAGCAGCTCGAGCGATTGTGCGGCACTTGCTCTAGCTCAAACGAGCAAGTCAGCCAGGAAAAACTGTGTAGACGTCCTAAGTGGCGAGGAGTCACTCGGTGGCCTACAGGGCCCGTGTGAACTCCGATTGGCTTGA

Protein sequence

MLTLLFLLVSLVQVPPLPVYRHLDALGLFVESVSFSCTQQMIKSALSRGKGFFSVIKSVLTTALEAVESLVDRVDAVLNIGHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQINFVKDVCLPSVTIAPFRSSSSDCAALALAQTSKSARKNCVDVLSGEESLGGLQGPCELRLA

Homology

[Close]

BLAST of Moc06g18520 vs. NCBI nr
Match: XP_022156053.1 (uncharacterized protein LOC111023022 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR
Sbjct: 122 GRGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 163

[Close]

BLAST of Moc06g18520 vs. NCBI nr
Match: XP_022158582.1 (uncharacterized protein LOC111025036 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G  RGNFGQRKFDGSNFNSNLSRGR RQNCSRSYGGKSNDD+
Sbjct: 180 GRSRGNFGQRKFDGSNFNSNLSRGRDRQNCSRSYGGKSNDDK 221

[Close]

BLAST of Moc06g18520 vs. NCBI nr
Match: KAA0045493.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-05
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           GRG++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GRGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEKN 85

[Close]

BLAST of Moc06g18520 vs. NCBI nr
Match: KAA0039323.1 (copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

[Close]

BLAST of Moc06g18520 vs. NCBI nr
Match: KAA0031927.1 (lectin receptor kinase [Cucumis melo var. makuwa] >TYK00506.1 lectin receptor kinase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

[Close]

BLAST of Moc06g18520 vs. ExPASy TrEMBL
Match: A0A6J1DPK0 (uncharacterized protein LOC111023022 OS=Momordica charantia OX=3673 GN=LOC111023022 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR
Sbjct: 122 GRGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 163

[Close]

BLAST of Moc06g18520 vs. ExPASy TrEMBL
Match: A0A6J1DXK7 (uncharacterized protein LOC111025036 OS=Momordica charantia OX=3673 GN=LOC111025036 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G  RGNFGQRKFDGSNFNSNLSRGR RQNCSRSYGGKSNDD+
Sbjct: 180 GRSRGNFGQRKFDGSNFNSNLSRGRDRQNCSRSYGGKSNDDK 221

[Close]

BLAST of Moc06g18520 vs. ExPASy TrEMBL
Match: A0A5A7TPN3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00380 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           GRG++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GRGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEKN 85

[Close]

BLAST of Moc06g18520 vs. ExPASy TrEMBL
Match: A0A5A7SRB2 (Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001160 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

[Close]

BLAST of Moc06g18520 vs. ExPASy TrEMBL
Match: A0A5A7T8M9 (Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001200 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

The following BLAST results are available for this feature:

BLAST of Moc06g18520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156053.1	4.1e-13	97.62	uncharacterized protein LOC111023022 [Momordica charantia]	[more]
XP_022158582.1	2.9e-11	90.48	uncharacterized protein LOC111025036 [Momordica charantia]	[more]
KAA0045493.1	4.1e-05	66.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039323.1	1.2e-04	64.44	copia-type polyprotein [Cucumis melo var. makuwa]	[more]
KAA0031927.1	1.2e-04	64.44	lectin receptor kinase [Cucumis melo var. makuwa] >TYK00506.1 lectin receptor ki...	[more]

BLAST of Moc06g18520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g18520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPK0	2.0e-13	97.62	uncharacterized protein LOC111023022 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DXK7	1.4e-11	90.48	uncharacterized protein LOC111025036 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7TPN3	2.0e-05	66.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5A7SRB2	5.7e-05	64.44	Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A5A7T8M9	5.7e-05	64.44	Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6...	[more]

BLAST of Moc06g18520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g18520.1	Moc06g18520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding