Moc06g18520.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g18520.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCopia-type polyprotein
Locationchr6: 14458681 .. 14461252 (-)
Sequence length564
RNA-Seq ExpressionMoc06g18520.1
SyntenyMoc06g18520.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACTCTTCTCTTTCTCTTGGTTTCTCTTGTTCAAGTTCCACCATTACCGGTGTACAGACATCTTGATGCTCTTGGACTATTTGTGGAGTCTGTGTCTTTTTCTTGTACACAACAGATGATAAAATCGGCTCTCAGTAGAGGCAAAGGCTTCTTCAGCGTGATAAAGAGTGTACTGACTACTGCATTAGAGGCAGTAGAATCTTTAGTGGATCGGGTTGATGCTGTTTTAAACATGTATTATTCTAGATACATTATGCATATACATTCCTAGGTATATGATACATGTACATGAACTAGTACATTCATGTATTTAGATAAGCTAATTGTGTGTTCATGTATGTATAGATTCATAGGATGGAGTTTATGGATCTAGATTCTTCCACAGAGTCTTACAAATAGGATGATCTCTTGTTATATTTCAAGCAAGTGTGTGGAGAAGAAAAACAAGAGAGTTTGTGAATCAAGTGTGTATTTGGTGAGAAATTTTTCAATACAAGTGAAGTTGTTTATTCTCAAACGGGTCTTGTTGATTCTAAATTAGCAAGTGTCCATCACACGCTTCCAATAAAGTGGTATCAGAGACTGAGTTTGAAAAGAGTTGTTTTTTGCAAATGGCAAACAACAATTTAGATCCATTCCAAGTGCCTCGTCTTACCTAAGAAAATTATAGCAGTTGGTGTATTCGTATGAAGGCTTTACTTGGTTCACAAGATGCATGGGAGATTGTTGATAGAGGCTATGAAGAACCAACAGAGGATGTGGCTTTGAATCAAGCTCAACGAGAGACTTTGCAAAATAATAGAAAGAAAGACCAAAAGGCTCTCACCATTATTCATCAAGCCATTGATGATTCAAATTTTGAGAAGATTTCTGGAGCAACTAACGCAATGCAAGCATGACAAATTTTGGAGAATACTTATAAAGGGGTTGATCGGGTCAAGAAGGTCCGACTTCAAAAATTGAAAGGTGATTATGAAGCATTACATATGAAGGAGTCTGAATCAATTTCAAATTACACTTCAAGGTTGCTAGCTGTGGTAAATGAAATGAAGCGGTATGGTGAGACGATAAATGATGAGCAAGTAGTTGAAAAGATACTTCGCTCATTTGATGAAAAATTTAATTTCATCGTTGTAGCAATTGAAGAATCAAAGGATTTGAGTACAGTGTCCGTTGATCAACTTATAGGTACTTTGCAAGCCCATGAAGAGAAGCTTTTCAAGAAGAGCAAACAGACAACCGAACAACTCTTTCAATCAAAGTTGCAGTTGAAGATAAAGAAGATAGCCAAGAAAGAGGTTATCGAGGTCATGGTCGTGGTAGAAGTCATGGACGTGGTGGCTTCAGAGGTCATGGTCGAGGAAACTTTGGTCAAAGAAAGTTTGATGGGAGTAATTTCAACTCCAATTTGTCAAGAGGTCGTGGCAGACAAAATTGTTCGAGGTCGTATGGAGGAAAGTCAAATGATGATAGGAGGTATGACAAAAGCCGAGTTGAATGTTATAATTGTTATAAATTCGATCATTATTCCTCGGAGTGCAGAAATAAAGTAGAAGAAAATGTCAATTACGTTGAAGAAGATGTTAAAAGCAGTGAACCATCATTGCTTTTAGCATGCAGAGATGAAGAAACATGTGAGAACAGTTTGTGGTATCTTGATAGTGGTGCAAACAACCACATGTGCGGAAGCAAATCCATGTTCGTGGAATTGGATGAATCTGTTGGTGGCAATATCATATTTGGTGATGCTACAAAAATCCCTGTAAAAGGAAAAGGTAAGATTTTTATCAATTTGAAAAACGGGAAGCATTAGTTTATCTCTAATGTCTATTATGTGCCAAATATGAAGAACAATATTTTGAGTTTGGGACAACTCTTGGAGAAAGACTACAATATTTTGACGAAAGATTATAGTCTTTCAATATGAGATCATCATGACAATATGATTGCTAAAGTCCAAATGACGAAGAATAGAATGTTTCCATTAAACATTCAAACTGATGTTACAAAATGTTTGAAGTCGTGTTTAAAAGATTCATCATGGATTTGGCACTTAAGACTTGGGCATTTGAACTTTGATGGCTTAAGATTATTATCCAGGAAGGGCATGGTGAAAGGATTGCCATATGTCAAGCATCCAGATCAACTTTGTGAAGGATGTCTGCTTGCCAAGTGTCACAATCGCACCTTTTCGAAGCAGCTCGAGCGATTGTGCGGCACTTGCTCTAGCTCAAACGAGCAAGTCAGCCAGGAAAAACTGTAAGTTGCGGACAATCTCGGTCGTGGGTCTAGCCTCCGCTCACGTTTTAGGAGAAAATTGGTTTTAGAAAACGTGAGAGAGAAAAACAGTTGAAAACATCTTTAAAACAAGCATTGTAGACATTGGATGCAAGAAAGCTTTGATTGCAAGAAAGTATACAACACTTGGTCGGGGGGAGGTTTGATGACTACTTGGTCCCCCCTAAGGTACATTATAAGGCATTTTTGGTGTGGCAGGTGTAGACGTCCTAAGTGGCGAGGAGTCACTCGGTGGCCTACAGGGCCCGTGTGAACTCCGATTGGCTTGA

mRNA sequence

ATGCTTACTCTTCTCTTTCTCTTGGTTTCTCTTGTTCAAGTTCCACCATTACCGGTGTACAGACATCTTGATGCTCTTGGACTATTTGTGGAGTCTGTGTCTTTTTCTTGTACACAACAGATGATAAAATCGGCTCTCAGTAGAGGCAAAGGCTTCTTCAGCGTGATAAAGAGTGTACTGACTACTGCATTAGAGGCAGTAGAATCTTTAGTGGATCGGGTTGATGCTGTTTTAAACATAGGTCATGGTCGAGGAAACTTTGGTCAAAGAAAGTTTGATGGGAGTAATTTCAACTCCAATTTGTCAAGAGGTCGTGGCAGACAAAATTGTTCGAGGTCGTATGGAGGAAAGTCAAATGATGATAGGAGCATCCAGATCAACTTTGTGAAGGATGTCTGCTTGCCAAGTGTCACAATCGCACCTTTTCGAAGCAGCTCGAGCGATTGTGCGGCACTTGCTCTAGCTCAAACGAGCAAGTCAGCCAGGAAAAACTGTGTAGACGTCCTAAGTGGCGAGGAGTCACTCGGTGGCCTACAGGGCCCGTGTGAACTCCGATTGGCTTGA

Coding sequence (CDS)

ATGCTTACTCTTCTCTTTCTCTTGGTTTCTCTTGTTCAAGTTCCACCATTACCGGTGTACAGACATCTTGATGCTCTTGGACTATTTGTGGAGTCTGTGTCTTTTTCTTGTACACAACAGATGATAAAATCGGCTCTCAGTAGAGGCAAAGGCTTCTTCAGCGTGATAAAGAGTGTACTGACTACTGCATTAGAGGCAGTAGAATCTTTAGTGGATCGGGTTGATGCTGTTTTAAACATAGGTCATGGTCGAGGAAACTTTGGTCAAAGAAAGTTTGATGGGAGTAATTTCAACTCCAATTTGTCAAGAGGTCGTGGCAGACAAAATTGTTCGAGGTCGTATGGAGGAAAGTCAAATGATGATAGGAGCATCCAGATCAACTTTGTGAAGGATGTCTGCTTGCCAAGTGTCACAATCGCACCTTTTCGAAGCAGCTCGAGCGATTGTGCGGCACTTGCTCTAGCTCAAACGAGCAAGTCAGCCAGGAAAAACTGTGTAGACGTCCTAAGTGGCGAGGAGTCACTCGGTGGCCTACAGGGCCCGTGTGAACTCCGATTGGCTTGA

Protein sequence

MLTLLFLLVSLVQVPPLPVYRHLDALGLFVESVSFSCTQQMIKSALSRGKGFFSVIKSVLTTALEAVESLVDRVDAVLNIGHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQINFVKDVCLPSVTIAPFRSSSSDCAALALAQTSKSARKNCVDVLSGEESLGGLQGPCELRLA
Homology
[Close]
BLAST of Moc06g18520.1 vs. NCBI nr
Match: XP_022156053.1 (uncharacterized protein LOC111023022 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR
Sbjct: 122 GRGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 163

[Close]
BLAST of Moc06g18520.1 vs. NCBI nr
Match: XP_022158582.1 (uncharacterized protein LOC111025036 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G  RGNFGQRKFDGSNFNSNLSRGR RQNCSRSYGGKSNDD+
Sbjct: 180 GRSRGNFGQRKFDGSNFNSNLSRGRDRQNCSRSYGGKSNDDK 221

[Close]
BLAST of Moc06g18520.1 vs. NCBI nr
Match: KAA0045493.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-05
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           GRG++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GRGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEKN 85

[Close]
BLAST of Moc06g18520.1 vs. NCBI nr
Match: KAA0039323.1 (copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

[Close]
BLAST of Moc06g18520.1 vs. NCBI nr
Match: KAA0031927.1 (lectin receptor kinase [Cucumis melo var. makuwa] >TYK00506.1 lectin receptor kinase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

[Close]
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match: A0A6J1DPK0 (uncharacterized protein LOC111023022 OS=Momordica charantia OX=3673 GN=LOC111023022 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR
Sbjct: 122 GRGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 163

[Close]
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match: A0A6J1DXK7 (uncharacterized protein LOC111025036 OS=Momordica charantia OX=3673 GN=LOC111025036 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 81  GHGRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDR 123
           G  RGNFGQRKFDGSNFNSNLSRGR RQNCSRSYGGKSNDD+
Sbjct: 180 GRSRGNFGQRKFDGSNFNSNLSRGRDRQNCSRSYGGKSNDDK 221

[Close]
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match: A0A5A7TPN3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00380 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           GRG++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GRGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEKN 85

[Close]
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match: A0A5A7SRB2 (Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001160 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

[Close]
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match: A0A5A7T8M9 (Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001200 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 83  GRGNFGQRKFDGSNFNSNLSRGRGRQNCSRSYGGKSNDDRSIQIN 128
           G+G++GQRKFD SN NSN SRGRGRQ+ SRS G +SN+DR ++ N
Sbjct: 41  GQGSYGQRKFDESNSNSNSSRGRGRQHYSRSSGERSNNDRRVEEN 85

The following BLAST results are available for this feature:
BLAST of Moc06g18520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156053.14.1e-1397.62uncharacterized protein LOC111023022 [Momordica charantia][more]
XP_022158582.12.9e-1190.48uncharacterized protein LOC111025036 [Momordica charantia][more]
KAA0045493.14.1e-0566.67reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0039323.11.2e-0464.44copia-type polyprotein [Cucumis melo var. makuwa][more]
KAA0031927.11.2e-0464.44lectin receptor kinase [Cucumis melo var. makuwa] >TYK00506.1 lectin receptor ki... [more]
BLAST of Moc06g18520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DPK02.0e-1397.62uncharacterized protein LOC111023022 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DXK71.4e-1190.48uncharacterized protein LOC111025036 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7TPN32.0e-0566.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12... [more]
A0A5A7SRB25.7e-0564.44Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7T8M95.7e-0564.44Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6... [more]
BLAST of Moc06g18520.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc06g18520Moc06g18520gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc06g18520.1.exon4Moc06g18520.1.exon4exon
Moc06g18520.1.exon3Moc06g18520.1.exon3exon
Moc06g18520.1.exon2Moc06g18520.1.exon2exon
Moc06g18520.1.exon1Moc06g18520.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc06g18520.1cds.Moc06g18520.1_4CDS
cds.Moc06g18520.1cds.Moc06g18520.1_3CDS
cds.Moc06g18520.1cds.Moc06g18520.1_2CDS
cds.Moc06g18520.1cds.Moc06g18520.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc06g18520.1Moc06g18520.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0016310 phosphorylation
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0016301 kinase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding