Moc05g17140 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g17140
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pol protein
Location	chr5: 12800694 .. 12803721 (+)
RNA-Seq Expression	Moc05g17140
Synteny	Moc05g17140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTCCTTCTTTTTATAGCCTCGGGCAATCGACCAGGAAGAACGACGGTTAGGGATGGCAGAGACGCGCCACGCTGTACGGGAAGCATCGAGGAGCATGCCTCTAATAGTTGCGGGCCGACACCTCGTCCTACTGCTCAGAGCCTGTTGCCTGCAGCTATGAGGTATGCATGTCGTATTGATGGTATCCGCCACCCACTACGATTACGTACAACGTCCAATTGTCCACATTCCCTTATCTCTTCGTGAGAGGACATGTGTCCTGTTCGGCAATGCTAGTTTGTGGGGGAGGGCAACCGTATGTGGTCTTGCGTTCCAGAAGCAGACACACATCCTACTCGATTTCTTTCCCCCAACAAATATAAATAAAAACAAAGGAATCTCGAAACTGATGATTCGAAGAGGAAAAAAGATAGATCGATACAATAATTAATAGAAAACATATTACCTATGTGTAACGACAAAGTATAAATTGAAAGAAAAAAAGGTTGACCTTGAAATTGCCAGCAACAATTAGATCAAAGAGACGACAATGATGTATTCTAGTAATATATATATATATATATATATATATATATATATATATATATATATTTTAAATATTCCACTCATTTATAGATATTTTTTCATTTTTTTAAAAATTGTCGTATTTGTTTAGGAAATGATATGTTTCCAATTTCTTTTAGTTTTTCAAAAATTAACTTAATTATTTAATTTTCAAAAAATATTTTCCTTTTTTTAACCTCGGATAAATTTGGTAATAAATATATAATTGTTGCCAAAATCTGGTAACAAATAATTTAAAAAAAAAAAGAAAGAAAAGAAAGTGGATGAAGCTAGGGTCCCAAGGACGTCGGAGCCACCAGGGGGCTTGAGCACGCATGGACCACTGTGTGAATACATATTTTGTTGTTTAGAAATCAATCCGTATACATTAATTATATACTTTACGAAGTTTAATGGCCCTGGGTCCTTAATAAAACAGCCCCTGCTAGTAGGATCTTTAAACTTTTAATTTTATGTCTTATGTTCTTAAGTTTTAAAAAGAATTCAATAGGTCCTAAAAACTTTTAACATTATGTTTAATGGGTTTTAAATTTTAATAGGTATAAAAGAACAAGAGAATTTATTATTCAAGATCATTTTAAATATAAAATTGAAAGTTCAAATATCTATTAGACAATTTTTTAAAGTTATCTATCGAGTATTGTTTAGAAAAGTATTTTCCATCTACCGAGTATTGTTTAGAAAAGTATTTGCCAATCTCTAATATTTAACTTTAGTCTATTAGACACGACCTTAAAATTTTATGAATAATTTCACCCAAATACTCTTAAGGAAAAAAAAATCACCCAAATACTTTTTAGATTAGCTTTTTGTTTTTGTTTAATTACTTTCAACAGCCTTAAATTTTGAACATAGCAATCAATGATGACCAACATCCATGACTGAACGGTTAAGATATTTTGCTATTTCTTAGGGGTATCTATTAATAATGTATTGGACGAGTTGTTTTGAAAACTTATTTCCACATATCTCTAATGTTTACAAATTTTATAGTTTTAGATTTTTGGATTTATAAATTTTCACTATTGCCAAATTTGTCCGCATTTATATTTATTATAATTAGTTTTTTTATTTAAATGTAAAAGATTTAATGTTTCAAATTTGATTTTATAAACGTTAAATTATTGTGGGACCCAAATCAGTTATTCTTGTAATCTCCTAATTTACTCTTTAATATATTTTACTAAAGAAGGAAATTTATTACAAAATATTTTATGATTTCATTCCAATTTTTTTTTTCGCTCAATTTCAATATATTTCAAATGCAATATTTGGCTCAATCTCACTAAAATTTGTCGAAGAGCACTACATTTTAGGAGAGTAAACTTGCCGGCATGATGAGGTAAGACGACAATGGAGTAATGCGACTTCATCCTTTATTTATATATATATATATATATATCTTCTTTTTTGTTTATCGCCTAAATTTTCATTTATATGCAGTTATAAACTATATTCGACTATAAACTATAGCCATTATACCATAAACTTATATGAAGATATAAACTATACTTGGCTATAAACTATAACTTACTATAAAGTATATACGACTATATCCCTCTATAATTAACAAATAAAACAAATAGCCTACATAATCAAATACATACGACGTCATCATCGAATATTTTTTCAATACCCCAAAATCGAACACCCAAAATCCGAAATAAAAAACAAACCTAGAATATTTAACTTACATAATCAATTGCAAACGGGCTGCCGAAGACGGTAACGACAAAAAACTGAGAACACTAAGAAGACGAGGAGATGGCCTGCTGGAAACAATGGTGAAAGCAAGAGAAAAAGAAGATAATGAAGAAGAGGAAGAGATAAGTAAAAATTTGGGAAGTTTTTTTTTTAGGAAACTGAAAAGGTGCATAAATCTAAGAATTTAAAATGTAAACCCCAAATCAACAATTTTTCAATTTTGAATTTTCATATCTTAATAATAATTATATGTGTATAAAAATGGTATATTGGTAAAATGCAGATGAGTTTCATCTTAAGGGGTGTATTTTAAGGCAAAAGTATAAATTTTGTTGAATCCCTTTGTGTAATTATCATTTCCAAATGGTCTATCAACATACTAATCCCTAATAATAATTGTCAATTTTTAATGGCTCTATTCACTAGGGGTGAAAGAAATCGAACCGACCCGAAAAACCAAACCGAACCGAATTGGTTCGGGTCCGGTCGGTTTATATAAAATATGAACCGAAACCGAAGGAAAGGGAAGCTTATTCCACGCTTTATTGGGCCATTTGAAGTGTTGGAGCATATTGGCTTCGTACCTTATCGATTGGTTTTACCGCCTTCCCTTTCAGTAGTCCACAATGTCTATCATGTATCCTTGTTATGGAAGTACATGGCGGATCCATCTCATGTCATCGACTACAAGCCATTGTGTTTGAGTGAGAACTTGAGTTATGAAGAGAAGCCAAGACGAATTCTTGCTAGATAA

mRNA sequence

ATGAGGGTCCTTCTTTTTATAGCCTCGGGCAATCGACCAGGAAGAACGACGGTTAGGGATGGCAGAGACGCGCCACGCTGTACGGGAAGCATCGAGGAGCATGCCTCTAATAGTTGCGGGCCGACACCTCGTCCTACTGCTCAGAGCCTGTTGCCTGCAGCTATGAGGAAAGGGAAGCTTATTCCACGCTTTATTGGGCCATTTGAAGTGTTGGAGCATATTGGCTTCGTACCTTATCGATTGGTTTTACCGCCTTCCCTTTCAGTAGTCCACAATGTCTATCATGTATCCTTGTTATGGAAGTACATGGCGGATCCATCTCATGTCATCGACTACAAGCCATTGTGTTTGAGTGAGAACTTGAGTTATGAAGAGAAGCCAAGACGAATTCTTGCTAGATAA

Coding sequence (CDS)

ATGAGGGTCCTTCTTTTTATAGCCTCGGGCAATCGACCAGGAAGAACGACGGTTAGGGATGGCAGAGACGCGCCACGCTGTACGGGAAGCATCGAGGAGCATGCCTCTAATAGTTGCGGGCCGACACCTCGTCCTACTGCTCAGAGCCTGTTGCCTGCAGCTATGAGGAAAGGGAAGCTTATTCCACGCTTTATTGGGCCATTTGAAGTGTTGGAGCATATTGGCTTCGTACCTTATCGATTGGTTTTACCGCCTTCCCTTTCAGTAGTCCACAATGTCTATCATGTATCCTTGTTATGGAAGTACATGGCGGATCCATCTCATGTCATCGACTACAAGCCATTGTGTTTGAGTGAGAACTTGAGTTATGAAGAGAAGCCAAGACGAATTCTTGCTAGATAA

Protein sequence

MRVLLFIASGNRPGRTTVRDGRDAPRCTGSIEEHASNSCGPTPRPTAQSLLPAAMRKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPLCLSENLSYEEKPRRILAR

Homology

[Close]

BLAST of Moc05g17140 vs. NCBI nr
Match: XP_038880478.1 (uncharacterized protein LOC120072137 [Benincasa hispida])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 56  RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
           R GKL PRFIGPFEVLE +G V YRL LPP+LS VHNV+HVS+L KY+ADPSHV+DY+PL
Sbjct: 93  RNGKLSPRFIGPFEVLERVGLVAYRLALPPTLSSVHNVFHVSILRKYVADPSHVVDYEPL 152

Query: 116 CLSENLSYEEKPRRILAR 134
            L++NLSYEEKP  ILAR
Sbjct: 153 QLNDNLSYEEKPIEILAR 170

[Close]

BLAST of Moc05g17140 vs. NCBI nr
Match: TYJ97414.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 6.2e-24
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 56  RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
           +KGKL PRF+GPFE+LE IG V YRL LPPSLS VH+V+HVS+L KY+ADP+HV+D++PL
Sbjct: 730 KKGKLSPRFVGPFEILERIGLVAYRLALPPSLSTVHDVFHVSMLRKYVADPTHVVDFEPL 789

Query: 116 CLSENLSYEEKPRRILAR 134
            +SENLSYEE+P  ILAR
Sbjct: 790 QISENLSYEEQPVEILAR 807

[Close]

BLAST of Moc05g17140 vs. NCBI nr
Match: XP_038902486.1 (uncharacterized protein LOC120089142 [Benincasa hispida] >XP_038904308.1 uncharacterized protein LOC120090662 [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 6.2e-24
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 56  RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
           ++GKL PRFIGPFE+LE +G V YRL LPPSLS VHNV+HVS+L KY+AD SHV+DY+P 
Sbjct: 87  KRGKLNPRFIGPFEILERVGLVAYRLALPPSLSAVHNVFHVSMLRKYVADSSHVVDYEPF 146

Query: 116 CLSENLSYEEKPRRILAR 134
            L+ENLSYEE+P RILAR
Sbjct: 147 HLNENLSYEEEPIRILAR 164

[Close]

BLAST of Moc05g17140 vs. NCBI nr
Match: KAA0067060.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 8.1e-24
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 56  RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
           R+GKL PRF+GPFE+LE IG V YRL LPPSLS VH+V+HVS+L KY+ADPSHV+DYKPL
Sbjct: 42  RRGKLSPRFVGPFEILERIGLVAYRLALPPSLSTVHDVFHVSMLRKYVADPSHVVDYKPL 101

Query: 116 CLSENLSYEEKPRRILAR 134
            + ENLSY E+P  +LAR
Sbjct: 102 EIDENLSYTEQPVEVLAR 119

[Close]

BLAST of Moc05g17140 vs. NCBI nr
Match: KAA0059580.1 (pol protein [Cucumis melo var. makuwa] >TYK12221.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 56   RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
            R+GKL PRF+GPFE+LE  G V YRL LPPSLS VH+V+HVS+LWKY++DPSHV+DY+PL
Sbjct: 947  RRGKLSPRFVGPFEILERTGPVAYRLALPPSLSAVHDVFHVSMLWKYVSDPSHVVDYEPL 1006

Query: 116  CLSENLSYEEKPRRILAR 134
             + ENLSY E+P  +LAR
Sbjct: 1007 EIDENLSYTERPVEVLAR 1024

[Close]

BLAST of Moc05g17140 vs. ExPASy TrEMBL
Match: A0A5D3BEF2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002390 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 56  RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
           +KGKL PRF+GPFE+LE IG V YRL LPPSLS VH+V+HVS+L KY+ADP+HV+D++PL
Sbjct: 730 KKGKLSPRFVGPFEILERIGLVAYRLALPPSLSTVHDVFHVSMLRKYVADPTHVVDFEPL 789

Query: 116 CLSENLSYEEKPRRILAR 134
            +SENLSYEE+P  ILAR
Sbjct: 790 QISENLSYEEQPVEILAR 807

[Close]

BLAST of Moc05g17140 vs. ExPASy TrEMBL
Match: A0A5A7VIM5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001090 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.9e-24
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 56  RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
           R+GKL PRF+GPFE+LE IG V YRL LPPSLS VH+V+HVS+L KY+ADPSHV+DYKPL
Sbjct: 42  RRGKLSPRFVGPFEILERIGLVAYRLALPPSLSTVHDVFHVSMLRKYVADPSHVVDYKPL 101

Query: 116 CLSENLSYEEKPRRILAR 134
            + ENLSY E+P  +LAR
Sbjct: 102 EIDENLSYTEQPVEVLAR 119

[Close]

BLAST of Moc05g17140 vs. ExPASy TrEMBL
Match: A0A5D3CK76 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00250 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 56   RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
            R+GKL PRF+GPFE+LE  G V YRL LPPSLS VH+V+HVS+LWKY++DPSHV+DY+PL
Sbjct: 947  RRGKLSPRFVGPFEILERTGPVAYRLALPPSLSAVHDVFHVSMLWKYVSDPSHVVDYEPL 1006

Query: 116  CLSENLSYEEKPRRILAR 134
             + ENLSY E+P  +LAR
Sbjct: 1007 EIDENLSYTERPVEVLAR 1024

[Close]

BLAST of Moc05g17140 vs. ExPASy TrEMBL
Match: A0A5A7UCD5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00810 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 56   RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
            R+GKL PRF+GPFE+LE IG V YRL LPPSLS VHNV+HVS+L KY++DPSHV+DY+PL
Sbjct: 1311 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHNVFHVSMLRKYVSDPSHVVDYEPL 1370

Query: 116  CLSENLSYEEKPRRILAR 134
             + ENLSY E+P  +LAR
Sbjct: 1371 EIDENLSYTEQPIEVLAR 1388

[Close]

BLAST of Moc05g17140 vs. ExPASy TrEMBL
Match: A0A5A7V810 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002410 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 56   RKGKLIPRFIGPFEVLEHIGFVPYRLVLPPSLSVVHNVYHVSLLWKYMADPSHVIDYKPL 115
            RKGKL PRF+GPFE+LE IG V YRL LPPSLS VH+V+HVS+L KY+ DPSHV+DYKPL
Sbjct: 1796 RKGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYKPL 1855

Query: 116  CLSENLSYEEKPRRILAR 134
             + ENLSY E+P  +LAR
Sbjct: 1856 EIDENLSYTEQPFEVLAR 1873

The following BLAST results are available for this feature:

BLAST of Moc05g17140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880478.1	1.3e-24	74.36	uncharacterized protein LOC120072137 [Benincasa hispida]	[more]
TYJ97414.1	6.2e-24	70.51	pol protein [Cucumis melo var. makuwa]	[more]
XP_038902486.1	6.2e-24	71.79	uncharacterized protein LOC120089142 [Benincasa hispida] >XP_038904308.1 unchara...	[more]
KAA0067060.1	8.1e-24	70.51	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059580.1	1.1e-23	67.95	pol protein [Cucumis melo var. makuwa] >TYK12221.1 pol protein [Cucumis melo var...	[more]

BLAST of Moc05g17140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g17140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEF2	3.0e-24	70.51	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002390 P...	[more]
A0A5A7VIM5	3.9e-24	70.51	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001090 PE...	[more]
A0A5D3CK76	5.1e-24	67.95	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00250 PE...	[more]
A0A5A7UCD5	2.0e-23	69.23	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold42...	[more]
A0A5A7V810	2.0e-23	70.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32...	[more]

BLAST of Moc05g17140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 55..131
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 55..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g17140.1	Moc05g17140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding