MS022725 (gene) Bitter gourd (TR) v1

Overview


Name	MS022725
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I assembly protein Ycf4
Location	scaffold41: 950024 .. 950395 (-)
RNA-Seq Expression	MS022725
Synteny	MS022725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCAATTCGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGGTTTCCTATAAAAAATTGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACGCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAAGTTTTTTGAAAAATGAAGTT

mRNA sequence

ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCAATTCGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGGTTTCCTATAAAAAATTGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACGCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAAGTTTTTTGAAAAATGAAGTT

Coding sequence (CDS)

ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCAATTCGATAGAAAAGAAGGAATAGTGTGTATTTTTCGTTGGGGGTTTCCTATAAAAAATTGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACGCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAAGTTTTTTGAAAAATGAAGTT

Protein sequence

MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESFLKNEV

Homology

[Close]

BLAST of MS022725 vs. NCBI nr
Match: YP_009752592.1 (photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QIT05073.1 photosystem I assembly protein Ycf4 [Trichosanthes kirilowii] >QJD26482.1 Ycf4 [Trichosanthes kirilowii var. japonica] >QJD26656.1 Ycf4 [Trichosanthes rosthornii] >QIT04988.1 photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QJD26307.1 Ycf4 [Trichosanthes kirilowii])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. NCBI nr
Match: YP_009751749.1 (photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum] >QIT04482.1 photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. NCBI nr
Match: YP_009752170.1 (photosystem I assembly protein Ycf4 [Linnaeosicyos amara] >QIT05580.1 photosystem I assembly protein Ycf4 [Linnaeosicyos amara])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. NCBI nr
Match: YP_009456072.1 (photosystem I assembly protein Ycf4 [Momordica charantia] >YP_009674402.1 photosystem I assembly protein Ycf4 [Siraitia grosvenorii] >YP_009738212.1 photosystem I assembly protein Ycf4 [Siraitia siamensis] >YP_009751917.1 photosystem I assembly protein Ycf4 [Cyclanthera pedata] >YP_009752254.1 photosystem I assembly protein Ycf4 [Trichosanthes baviensis] >YP_009753185.1 photosystem I assembly protein Ycf4 [Trichosanthes truncata] >YP_009753269.1 photosystem I assembly protein Ycf4 [Nothoalsomitra suberosa] >YP_009753800.1 photosystem I assembly protein Ycf4 [Trichosanthes pilosa] >YP_009753885.1 photosystem I assembly protein Ycf4 [Trichosanthes lobata] >QIT04061.1 photosystem I assembly protein Ycf4 [Luffa aegyptiaca] >AUJ21839.1 photosystem I assembly protein Ycf4 [Momordica charantia] >QDK59400.1 photosystem I assembly protein Ycf4 [Siraitia grosvenorii] >QIB71516.1 photosystem I assembly protein Ycf4 [Siraitia grosvenorii] >QIB71604.1 photosystem I assembly protein Ycf4 [Siraitia siamensis])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. NCBI nr
Match: QKX48484.1 (photosystem I assembly protein Ycf4 [Luffa acutangula])

HSP 1 Score: 235.0 bits (598), Expect = 3.6e-58
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYM+IRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMDIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy Swiss-Prot
Match: A0ZZ46 (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-60
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy Swiss-Prot
Match: Q2L913 (Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-60
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-59
Identity = 113/119 (94.96%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKE IV IFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy Swiss-Prot
Match: Q09G35 (Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.4e-59
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRF MKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFFMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEG+Y RRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGLYPRRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy Swiss-Prot
Match: Q2MIH6 (Photosystem I assembly protein Ycf4 OS=Solanum bulbocastanum OX=147425 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.4e-59
Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFL+KDI
Sbjct: 66  MSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLIKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QS+RIEVKEGIYARRVLYM+IRGQG+IPLTRTD+NLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy TrEMBL
Match: A0A6H0ESZ3 (Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii OX=3677 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-59
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy TrEMBL
Match: A0A6M3RTZ8 (Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii var. japonica OX=61011 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-59
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy TrEMBL
Match: A0A6H0EP62 (Photosystem I assembly protein Ycf4 OS=Luffa aegyptiaca OX=3670 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-59
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy TrEMBL
Match: A0A514YKU3 (Photosystem I assembly protein Ycf4 OS=Siraitia grosvenorii OX=190515 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-59
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. ExPASy TrEMBL
Match: A0A6H0EPD9 (Photosystem I assembly protein Ycf4 OS=Trichosanthes baviensis OX=1054457 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-59
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of MS022725 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 105/119 (88.24%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDI 60
           MSFYGIAGLFIS YLWCTILWNVGSGYD FDRKEGIV IFRWGFP K+ RIFLRF MKDI
Sbjct: 66  MSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRFFMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIESF 120
           QSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T REIEQKAAELAYFLRVPIE F
Sbjct: 126 QSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

The following BLAST results are available for this feature:

BLAST of MS022725 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752592.1	1.6e-58	96.64	photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QIT05073.1 photo...	[more]
YP_009751749.1	1.6e-58	96.64	photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum] >QIT04482.1 ph...	[more]
YP_009752170.1	1.6e-58	96.64	photosystem I assembly protein Ycf4 [Linnaeosicyos amara] >QIT05580.1 photosyste...	[more]
YP_009456072.1	1.6e-58	96.64	photosystem I assembly protein Ycf4 [Momordica charantia] >YP_009674402.1 photos...	[more]
QKX48484.1	3.6e-58	95.80	photosystem I assembly protein Ycf4 [Luffa acutangula]	[more]

BLAST of MS022725 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0ZZ46	1.8e-60	94.12	Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3...	[more]
Q2L913	1.8e-60	94.12	Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 S...	[more]
Q2QD78	2.6e-59	94.96	Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1	[more]
Q09G35	4.4e-59	92.44	Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=...	[more]
Q2MIH6	4.4e-59	91.60	Photosystem I assembly protein Ycf4 OS=Solanum bulbocastanum OX=147425 GN=ycf4 P...	[more]

BLAST of MS022725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ESZ3	7.8e-59	96.64	Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii OX=3677 GN=ycf4 P...	[more]
A0A6M3RTZ8	7.8e-59	96.64	Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii var. japonica OX=...	[more]
A0A6H0EP62	7.8e-59	96.64	Photosystem I assembly protein Ycf4 OS=Luffa aegyptiaca OX=3670 GN=ycf4 PE=3 SV=...	[more]
A0A514YKU3	7.8e-59	96.64	Photosystem I assembly protein Ycf4 OS=Siraitia grosvenorii OX=190515 GN=ycf4 PE...	[more]
A0A6H0EPD9	7.8e-59	96.64	Photosystem I assembly protein Ycf4 OS=Trichosanthes baviensis OX=1054457 GN=ycf...	[more]

BLAST of MS022725 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00520.1	1.4e-55	88.24	unfolded protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003359	Photosystem I Ycf4, assembly	PFAM	PF02392	Ycf4	coord: 1..117 e-value: 3.6E-50 score: 170.0
None	No IPR available	PANTHER	PTHR33288:SF4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	coord: 1..118
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022725.1	MS022725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid