MS019340 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTATAGACAAACTTAGGATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCACAAAATGAATATTTATCTTAAAAAATCATTTAACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTATAGACAAACTATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCATGAATATTTATCTTAAAAAATCATTTAACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTATAGACAAACTATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCATGAATATTTATCTTAAAAAATCATTTAACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRMSYGMNIYLKKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLGTI Homology
BLAST of MS019340 vs. NCBI nr
Match: YP_009939732.1 (Ycf2 [[Argentina] phanerophlebia] >YP_009939749.1 Ycf2 [[Argentina] phanerophlebia] >QNV48973.1 Ycf2 [[Argentina] phanerophlebia] >QNV48990.1 Ycf2 [[Argentina] phanerophlebia]) HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. NCBI nr
Match: ARD03809.1 (hypothetical protein RF2 [Potentilla micropetala]) HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. NCBI nr
Match: QVG61118.1 (hypothetical chloroplast RF2 [Potentilla lineata] >QVG61119.1 hypothetical chloroplast RF2 [Potentilla lineata]) HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. NCBI nr
Match: ARC98242.1 (hypothetical protein RF2 [Potentilla lineata]) HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. NCBI nr
Match: YP_009687062.1 (hypothetical protein RF2 [Klainedoxa gabonensis] >YP_009687079.1 hypothetical protein RF2 [Klainedoxa gabonensis] >QDW75808.1 hypothetical protein RF2 [Klainedoxa gabonensis] >QDW75827.1 hypothetical protein RF2 [Klainedoxa gabonensis]) HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18 Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0
BLAST of MS019340 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.3e-21 Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0
BLAST of MS019340 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 2.7e-20 Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0
BLAST of MS019340 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 2.7e-20 Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0
BLAST of MS019340 vs. ExPASy Swiss-Prot
Match: P61241 (Protein Ycf2 OS=Amborella trichopoda OX=13333 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 7.8e-20 Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 0
BLAST of MS019340 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 7.8e-20 Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 0
BLAST of MS019340 vs. ExPASy TrEMBL
Match: A0A6N2KJM8 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS97719 PE=3 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19 Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 0
BLAST of MS019340 vs. ExPASy TrEMBL
Match: A0A7L7S722 (Protein Ycf2 OS=[Argentina] phanerophlebia OX=1570123 GN=ycf2 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 9.0e-19 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. ExPASy TrEMBL
Match: A0A1V0IP46 (Protein Ycf2 OS=Potentilla lineata OX=539895 GN=ycf2 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 9.0e-19 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. ExPASy TrEMBL
Match: A0A1V0J4Y9 (Protein Ycf2 OS=Potentilla micropetala OX=667228 GN=ycf2 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 9.0e-19 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0
BLAST of MS019340 vs. ExPASy TrEMBL
Match: A0A5B8GW68 (Protein Ycf2 OS=Klainedoxa gabonensis OX=289639 GN=ycf2 PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18 Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0
BLAST of MS019340 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19 Identity = 62/122 (50.82%), Postives = 79/122 (64.75%), Query Frame = 0
BLAST of MS019340 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19 Identity = 62/122 (50.82%), Postives = 79/122 (64.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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