MS019340.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS019340.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold611: 483806 .. 484138 (-)
Sequence length	324
RNA-Seq Expression	MS019340.1
Synteny	MS019340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTATAGACAAACTTAGGATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCACAAAATGAATATTTATCTTAAAAAATCATTTAACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT

mRNA sequence

ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTATAGACAAACTATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCATGAATATTTATCTTAAAAAATCATTTAACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT

Coding sequence (CDS)

ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTATAGACAAACTATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCATGAATATTTATCTTAAAAAATCATTTAACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT

Protein sequence

MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRMSYGMNIYLKKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLGTI

Homology

[Close]

BLAST of MS019340.1 vs. NCBI nr
Match: YP_009939732.1 (Ycf2 [[Argentina] phanerophlebia] >YP_009939749.1 Ycf2 [[Argentina] phanerophlebia] >QNV48973.1 Ycf2 [[Argentina] phanerophlebia] >QNV48990.1 Ycf2 [[Argentina] phanerophlebia])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1836 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1895

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1896 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1955

[Close]

BLAST of MS019340.1 vs. NCBI nr
Match: ARD03809.1 (hypothetical protein RF2 [Potentilla micropetala])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1836 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1895

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1896 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1955

[Close]

BLAST of MS019340.1 vs. NCBI nr
Match: QVG61118.1 (hypothetical chloroplast RF2 [Potentilla lineata] >QVG61119.1 hypothetical chloroplast RF2 [Potentilla lineata])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1836 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1895

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1896 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1955

[Close]

BLAST of MS019340.1 vs. NCBI nr
Match: ARC98242.1 (hypothetical protein RF2 [Potentilla lineata])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1807 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1866

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1867 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1926

[Close]

BLAST of MS019340.1 vs. NCBI nr
Match: YP_009687062.1 (hypothetical protein RF2 [Klainedoxa gabonensis] >YP_009687079.1 hypothetical protein RF2 [Klainedoxa gabonensis] >QDW75808.1 hypothetical protein RF2 [Klainedoxa gabonensis] >QDW75827.1 hypothetical protein RF2 [Klainedoxa gabonensis])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISH 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT     +    +  G      
Sbjct: 1875 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSRVSSVQDHGILCYQI 1934

Query: 61   RMSYGMNIYL-------------KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              +   N++L             KKS N+  SYLYKWYFELGT+MKKL  FLYLL+CS G
Sbjct: 1935 GRAVAQNLFLSNCPVDPISIYMKKKSCNERDSYLYKWYFELGTSMKKLTIFLYLLSCSAG 1994

[Close]

BLAST of MS019340.1 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.3e-21
Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISH 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT     +    +  G F    
Sbjct: 1858 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSRVRSVQDHGIFFYQI 1917

Query: 61   RMSYGMNIYL-------------KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              +   N++L             KKS N+  SYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1918 GRAVAQNVFLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1977

[Close]

BLAST of MS019340.1 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-20
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHR 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT  D +     +     + ++
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQT-WDLRSQVRSVQDHGILFYQ 1899

Query: 61   M--SYGMNIYL-------------KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSL 109
            +  +   N++L             KKS N+  SYLYKWYFELGT+MKKL   LYLL+CS 
Sbjct: 1900 IGRAVAQNVFLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSA 1959

[Close]

BLAST of MS019340.1 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-20
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHR 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT  D +     +     + ++
Sbjct: 1843 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQT-WDLRSQVRSVQDHGILFYQ 1902

Query: 61   M--SYGMNIYL-------------KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSL 109
            +  +   N++L             KKS N+  SYLYKWYFELGT+MKKL   LYLL+CS 
Sbjct: 1903 IGRAVAQNVFLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSA 1962

[Close]

BLAST of MS019340.1 vs. ExPASy Swiss-Prot
Match: P61241 (Protein Ycf2 OS=Amborella trichopoda OX=13333 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.8e-20
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN RDLVAL NE LSISITQKK II TN IRS+L+RQT         + D     ++I
Sbjct: 1855 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1914

Query: 61   MGSFS----ISHRMSYGMNIYLKKSFNKLG-SYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              SF+    +S+     ++ Y+KK   K G SYLYKWYFELGT++KKL T LYLL+CS G
Sbjct: 1915 GRSFAQNVLLSNCSIDPISTYMKKKSCKEGDSYLYKWYFELGTSIKKLTTLLYLLSCSAG 1974

[Close]

BLAST of MS019340.1 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.8e-20
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQ+K II TNIIRS+L+RQT         + D     ++I
Sbjct: 1546 MGSNVRDLVALTNEALSISITQRKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1605

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              + +    +S+     ++IY+ KKS N+ GSYLY WYFEL T+MKKL   LYLLNCS G
Sbjct: 1606 GRALAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYNWYFELETSMKKLTILLYLLNCSAG 1665

[Close]

BLAST of MS019340.1 vs. ExPASy TrEMBL
Match: A0A6N2KJM8 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS97719 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHR 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT          +  +  +S+ 
Sbjct: 1712 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQIGRAVAQNVFLSNC 1771

Query: 61   MSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLGTI 109
                ++IY+ KKS N+  SYLYKWYFELGT+MKKL   LYLL+CS G+I
Sbjct: 1772 PIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSI 1820

[Close]

BLAST of MS019340.1 vs. ExPASy TrEMBL
Match: A0A7L7S722 (Protein Ycf2 OS=[Argentina] phanerophlebia OX=1570123 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.0e-19
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1836 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1895

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1896 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1955

[Close]

BLAST of MS019340.1 vs. ExPASy TrEMBL
Match: A0A1V0IP46 (Protein Ycf2 OS=Potentilla lineata OX=539895 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.0e-19
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1807 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1866

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1867 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1926

[Close]

BLAST of MS019340.1 vs. ExPASy TrEMBL
Match: A0A1V0J4Y9 (Protein Ycf2 OS=Potentilla micropetala OX=667228 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.0e-19
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I
Sbjct: 1836 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1895

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              S +    +S+     ++IY+ KKS N+ GSYLYKWYFELGT+MKKL   LYLL+CS G
Sbjct: 1896 GRSVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG 1955

[Close]

BLAST of MS019340.1 vs. ExPASy TrEMBL
Match: A0A5B8GW68 (Protein Ycf2 OS=Klainedoxa gabonensis OX=289639 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISH 60
            M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT     +    +  G      
Sbjct: 1875 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSRVSSVQDHGILCYQI 1934

Query: 61   RMSYGMNIYL-------------KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              +   N++L             KKS N+  SYLYKWYFELGT+MKKL  FLYLL+CS G
Sbjct: 1935 GRAVAQNLFLSNCPVDPISIYMKKKSCNERDSYLYKWYFELGTSMKKLTIFLYLLSCSAG 1994

[Close]

BLAST of MS019340.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 62/122 (50.82%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M S+ RDLVAL NE LSISITQKK II TN IRS+L+RQT         + D     ++I
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              + +    IS+     ++IY+ KKS N+  SYLYKWYFELGT+MKK    LYLL+CS G
Sbjct: 1912 GRAVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAG 1971

[Close]

BLAST of MS019340.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 62/122 (50.82%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1    MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKI 60
            M S+ RDLVAL NE LSISITQKK II TN IRS+L+RQT         + D     ++I
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   MGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLG 109
              + +    IS+     ++IY+ KKS N+  SYLYKWYFELGT+MKK    LYLL+CS G
Sbjct: 1912 GRAVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAG 1971

The following BLAST results are available for this feature:

BLAST of MS019340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009939732.1	1.9e-18	54.10	Ycf2 [[Argentina] phanerophlebia] >YP_009939749.1 Ycf2 [[Argentina] phanerophleb...	[more]
ARD03809.1	1.9e-18	54.10	hypothetical protein RF2 [Potentilla micropetala]	[more]
QVG61118.1	1.9e-18	54.10	hypothetical chloroplast RF2 [Potentilla lineata] >QVG61119.1 hypothetical chlor...	[more]
ARC98242.1	1.9e-18	54.10	hypothetical protein RF2 [Potentilla lineata]	[more]
YP_009687062.1	2.4e-18	51.64	hypothetical protein RF2 [Klainedoxa gabonensis] >YP_009687079.1 hypothetical pr...	[more]

BLAST of MS019340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1NWJ3	9.3e-21	51.64	Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1	[more]
Q14F97	2.7e-20	51.22	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]
A4GYV4	2.7e-20	51.22	Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1	[more]
P61241	7.8e-20	52.46	Protein Ycf2 OS=Amborella trichopoda OX=13333 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	7.8e-20	51.64	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS019340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2KJM8	4.0e-19	57.80	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS9771...	[more]
A0A7L7S722	9.0e-19	54.10	Protein Ycf2 OS=[Argentina] phanerophlebia OX=1570123 GN=ycf2 PE=3 SV=1	[more]
A0A1V0IP46	9.0e-19	54.10	Protein Ycf2 OS=Potentilla lineata OX=539895 GN=ycf2 PE=3 SV=1	[more]
A0A1V0J4Y9	9.0e-19	54.10	Protein Ycf2 OS=Potentilla micropetala OX=667228 GN=ycf2 PE=3 SV=1	[more]
A0A5B8GW68	1.2e-18	51.64	Protein Ycf2 OS=Klainedoxa gabonensis OX=289639 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS019340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.3e-19	50.82	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.3e-19	50.82	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 66..107
None	No IPR available	PANTHER	PTHR33078:SF43	PROTEIN YCF2	coord: 1..40
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..40
None	No IPR available	PANTHER	PTHR33078:SF43	PROTEIN YCF2	coord: 66..107

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS019340	MS019340	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS019340.1-cds	MS019340.1-cds-scaffold611:483806..483937	CDS
MS019340.1-cds	MS019340.1-cds-scaffold611:483943..484014	CDS
MS019340.1-cds	MS019340.1-cds-scaffold611:484019..484138	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS019340.1	MS019340.1-protein	polypeptide