MS014680 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGGTTTGTTTCTTATTTCCTCTCACTTCTCTTTTGATCTTTTTGAAATTATGGCTTTGCTTTTACTTCAAATCGGATTCTTTTCTCAAATTCTAGTGAATTAGAATAGTAAGAAAAGGGCTGTGATTTTGTTTATTCCAACTATAATTAAAATTATCATCCCCATCTTCACCCTTTATGTTCTAAAAGCATATTCTAAGAATATATTAAACAAAAACTTAATTTTCATAAACGAATCTAAAACTCGAATTGCTTTGAAGTTATGAGTTCAAACCAAGGTTGAATTACTAGTGAAGTCGACTTCCATTAAAGTCGATGTCTGCTCCTTTTCTTAATCTTATTAGTTGTAGTCACTAGTTGTAGGTAAAGCAAAGACAGAAGTAACTGATTTTTTGTTGCTAAATATTGTAGTCATATGGTTATCTTATAGGATTAAATTATTAATCACAACTATCAAGAAATAGCTGGTACACATGCTAAAAATTGCCTATGGTCAGTATCTAAGAAGCACGGACACGGACAACACGGCAACACACCAATTTTTTAAAATGTAGAATACAAACATATTGGGGACAAATAATTATTAATTTTCTTATAGATAATATGTGTGTATATCGATTTAATAATACTTCTAAATTAATACACAATTTGTTATCCAACAAACGTTATTATACAAATTAAAAAAGAAAGAAAGAAAGAAAATCAGTCGAAGAAAAAACGAAAACTCTCGTCTTAAACAAAACTTTCTCGTCTTAAACAAAAACTTTCATACAAATTCGTCCTCATCTGGATCACATTTGTCAATTCCATTACTATTGTCAGTCTAAATTTGGTTCATCTAACGATAAAGGAACTATTTCCAGTATGCCAATGGGCTGGCCGGTTGAGCTTTTGTTTTTTATTTGGTTTCTTTTAGGTGGGCTTATATTTTTTTCTTTAAATTTCATGTAAGTTTCATCTGTTTTCAACACAAATTTGTTTAGGTTAGTATCAGTAGATAGTAATATGGTTGGTTTTAAACTTGAACCTTAAGCAGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCTCCAAAGGTAAATTCTTAAAAATTCTATTATAGTATTTTCTTTTTTCTCATTGCAAGTTCTGTGAAGAGTATCAATATTCATGAGTTCAATCTCAAAACCAATTGGTAATGAGAGGAGTAGCTCATGTCTATTGTAAACCATTGTAAGGTCCCTCACCTTTTTTAATGTGGAATTCTTAACATGCTCTCTTAAGATCGTAGTTCTTTTGGCTCATCGATCTTGGCCGGATCCTATTTTGATATCATATCAATATTCATGGAATTCCATCTCAAAACCAATTAGTAATGAGATAAGTAATCCATGTCTATTATAAACCCTTGTCAGATCCCTTATCTTTTCAATGTGAGATCCTTAACAAAGAGTACTCTGGAGTTTGTGTGCTAAAGTTACAACAAGAAGTCTAATTGCTTTTGTTTACCTTGTAAGAGTTTTTGATTTCTTTCCATCCAAATAAGGCTGTAATAGAGCTCTAGTAGCAAATCTCTTAGGCCCTGAGATTTGTCGAAAAACTGGCCTCGGAGGAGAATCAGCTTGAAGCTGATTCGAAAACTCGATTATGCTACGTGGCCATCCTTTATTCATAACGAAAGTGGTCATCCTTAGGAAAGTTCGTTTTCCATAGGATCATACAAGAACAACAAACAACAGGATGAGTCGACAATCGTTACGATTATACTTTTTTAGGTACCTTCTCGAACATTCTGCTTTAGGTTGAGGATTTTCAAGAGAAGATACTCAAAAGCCTCCCAAGTCATCAATTTTGTTCTTCAAGTGGATCCAATACTCTACCTATTTGTCAAACTAGTTCCTTCTAAGCCTTAAGTCTCATTCTTCATTGCTAGGATTCCAACTGATGAAGCTAGAGATGGTGCAAATTTTTTTAATTTTTTTTGTTGGACTAAAAATGATTAAAATAATAATAATTTTTTTTAGGGCCAAAATAGAACCAAGCTTAAAAATTTGCTTATTATTATGTTGTTTTGGATGGTTGCCACAAACAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTAGTTGGT CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGCAGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTAGTTGGT CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGCAGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTAGTTGGT QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG Homology
BLAST of MS014680 vs. NCBI nr
Match: XP_022145337.1 (protein LSD1-like [Momordica charantia]) HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55 Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of MS014680 vs. NCBI nr
Match: XP_008448703.1 (PREDICTED: protein LOL1 isoform X1 [Cucumis melo]) HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43 Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of MS014680 vs. NCBI nr
Match: XP_031738784.1 (protein LSD1 [Cucumis sativus]) HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43 Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of MS014680 vs. NCBI nr
Match: KAE8650032.1 (hypothetical protein Csa_010851 [Cucumis sativus]) HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43 Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of MS014680 vs. NCBI nr
Match: XP_038903355.1 (protein LSD1-like [Benincasa hispida]) HSP 1 Score: 184.1 bits (466), Expect = 6.6e-43 Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 0
BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 2.9e-41 Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = 0
BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 1.9e-40 Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0
BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 3.9e-30 Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 0
BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 8.1e-28 Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = 0
BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 3.4e-26 Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0
BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A6J1CWA3 (protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 7.3e-56 Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A1S3BKC0 (protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43 Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A1S3BJQ2 (protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41 Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 0
BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A6P6TW30 (protein LOL1 isoform X1 OS=Coffea arabica OX=13443 GN=LOC113704304 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40 Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0
BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A4Y7KPP1 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_049613 PE=4 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40 Identity = 80/112 (71.43%), Postives = 96/112 (85.71%), Query Frame = 0
BLAST of MS014680 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 ) HSP 1 Score: 166.4 bits (420), Expect = 1.3e-41 Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0
BLAST of MS014680 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 ) HSP 1 Score: 166.4 bits (420), Expect = 1.3e-41 Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0
BLAST of MS014680 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 ) HSP 1 Score: 166.4 bits (420), Expect = 1.3e-41 Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0
BLAST of MS014680 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein ) HSP 1 Score: 119.0 bits (297), Expect = 2.4e-27 Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0
BLAST of MS014680 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein ) HSP 1 Score: 119.0 bits (297), Expect = 2.4e-27 Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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