MS014680 (gene) Bitter gourd (TR) v1

Overview


Name	MS014680
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LSD1 zinc finger family protein
Location	scaffold1315: 210551 .. 212911 (-)
RNA-Seq Expression	MS014680
Synteny	MS014680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGGTTTGTTTCTTATTTCCTCTCACTTCTCTTTTGATCTTTTTGAAATTATGGCTTTGCTTTTACTTCAAATCGGATTCTTTTCTCAAATTCTAGTGAATTAGAATAGTAAGAAAAGGGCTGTGATTTTGTTTATTCCAACTATAATTAAAATTATCATCCCCATCTTCACCCTTTATGTTCTAAAAGCATATTCTAAGAATATATTAAACAAAAACTTAATTTTCATAAACGAATCTAAAACTCGAATTGCTTTGAAGTTATGAGTTCAAACCAAGGTTGAATTACTAGTGAAGTCGACTTCCATTAAAGTCGATGTCTGCTCCTTTTCTTAATCTTATTAGTTGTAGTCACTAGTTGTAGGTAAAGCAAAGACAGAAGTAACTGATTTTTTGTTGCTAAATATTGTAGTCATATGGTTATCTTATAGGATTAAATTATTAATCACAACTATCAAGAAATAGCTGGTACACATGCTAAAAATTGCCTATGGTCAGTATCTAAGAAGCACGGACACGGACAACACGGCAACACACCAATTTTTTAAAATGTAGAATACAAACATATTGGGGACAAATAATTATTAATTTTCTTATAGATAATATGTGTGTATATCGATTTAATAATACTTCTAAATTAATACACAATTTGTTATCCAACAAACGTTATTATACAAATTAAAAAAGAAAGAAAGAAAGAAAATCAGTCGAAGAAAAAACGAAAACTCTCGTCTTAAACAAAACTTTCTCGTCTTAAACAAAAACTTTCATACAAATTCGTCCTCATCTGGATCACATTTGTCAATTCCATTACTATTGTCAGTCTAAATTTGGTTCATCTAACGATAAAGGAACTATTTCCAGTATGCCAATGGGCTGGCCGGTTGAGCTTTTGTTTTTTATTTGGTTTCTTTTAGGTGGGCTTATATTTTTTTCTTTAAATTTCATGTAAGTTTCATCTGTTTTCAACACAAATTTGTTTAGGTTAGTATCAGTAGATAGTAATATGGTTGGTTTTAAACTTGAACCTTAAGCAGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCTCCAAAGGTAAATTCTTAAAAATTCTATTATAGTATTTTCTTTTTTCTCATTGCAAGTTCTGTGAAGAGTATCAATATTCATGAGTTCAATCTCAAAACCAATTGGTAATGAGAGGAGTAGCTCATGTCTATTGTAAACCATTGTAAGGTCCCTCACCTTTTTTAATGTGGAATTCTTAACATGCTCTCTTAAGATCGTAGTTCTTTTGGCTCATCGATCTTGGCCGGATCCTATTTTGATATCATATCAATATTCATGGAATTCCATCTCAAAACCAATTAGTAATGAGATAAGTAATCCATGTCTATTATAAACCCTTGTCAGATCCCTTATCTTTTCAATGTGAGATCCTTAACAAAGAGTACTCTGGAGTTTGTGTGCTAAAGTTACAACAAGAAGTCTAATTGCTTTTGTTTACCTTGTAAGAGTTTTTGATTTCTTTCCATCCAAATAAGGCTGTAATAGAGCTCTAGTAGCAAATCTCTTAGGCCCTGAGATTTGTCGAAAAACTGGCCTCGGAGGAGAATCAGCTTGAAGCTGATTCGAAAACTCGATTATGCTACGTGGCCATCCTTTATTCATAACGAAAGTGGTCATCCTTAGGAAAGTTCGTTTTCCATAGGATCATACAAGAACAACAAACAACAGGATGAGTCGACAATCGTTACGATTATACTTTTTTAGGTACCTTCTCGAACATTCTGCTTTAGGTTGAGGATTTTCAAGAGAAGATACTCAAAAGCCTCCCAAGTCATCAATTTTGTTCTTCAAGTGGATCCAATACTCTACCTATTTGTCAAACTAGTTCCTTCTAAGCCTTAAGTCTCATTCTTCATTGCTAGGATTCCAACTGATGAAGCTAGAGATGGTGCAAATTTTTTTAATTTTTTTTGTTGGACTAAAAATGATTAAAATAATAATAATTTTTTTTAGGGCCAAAATAGAACCAAGCTTAAAAATTTGCTTATTATTATGTTGTTTTGGATGGTTGCCACAAACAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTAGTTGGT

mRNA sequence

CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGCAGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTAGTTGGT

Coding sequence (CDS)

CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGCAGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTAGTTGGT

Protein sequence

QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG

Homology

[Close]

BLAST of MS014680 vs. NCBI nr
Match: XP_022145337.1 (protein LSD1-like [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QSRMVCSGCKNLLIYPVGATSICCTLCH+VSPVPTP GLEMARLVCKGCHTLLLFSRGAT
Sbjct: 10  QSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTP-GLEMARLVCKGCHTLLLFSRGAT 69

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG
Sbjct: 70  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 120

[Close]

BLAST of MS014680 vs. NCBI nr
Match: XP_008448703.1 (PREDICTED: protein LOL1 isoform X1 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           Q++++CSGCKN+LIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGAT
Sbjct: 60  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPT-SGLTMARLVCSGCYTLLMYSRGAT 119

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRT+N+ASKANQ A  NC NCR+LLMYQC AHSV+CTLCNFVT VG
Sbjct: 120 SVQCSCCRTINAASKANQMAHTNCGNCRVLLMYQCEAHSVKCTLCNFVTSVG 170

[Close]

BLAST of MS014680 vs. NCBI nr
Match: XP_031738784.1 (protein LSD1 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           Q++++CSGCKNLLIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGA 
Sbjct: 10  QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPT-SGLTMARLVCSGCYTLLMYSRGAK 69

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRT+N+AS+ANQ A INC NCR+LLMYQC AHSV+CTLCNFVT VG
Sbjct: 70  SVQCSCCRTINAASEANQMAHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVG 120

[Close]

BLAST of MS014680 vs. NCBI nr
Match: KAE8650032.1 (hypothetical protein Csa_010851 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           Q++++CSGCKNLLIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGA 
Sbjct: 387 QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPT-SGLTMARLVCSGCYTLLMYSRGAK 446

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRT+N+AS+ANQ A INC NCR+LLMYQC AHSV+CTLCNFVT VG
Sbjct: 447 SVQCSCCRTINAASEANQMAHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVG 497

[Close]

BLAST of MS014680 vs. NCBI nr
Match: XP_038903355.1 (protein LSD1-like [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 6.6e-43
Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           ++ +VCSGCK LLIYP GAT ICC LCHTVSPVPT +GL MARLVC GCHTLL++SRGAT
Sbjct: 10  ENHIVCSGCKILLIYPAGATFICCALCHTVSPVPT-SGLTMARLVCSGCHTLLMYSRGAT 69

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRTVN+AS+ANQ A INC NCR++LMYQ GAHSV+CTLCNFVT VG
Sbjct: 70  SVQCSCCRTVNAASEANQMAHINCGNCRVVLMYQFGAHSVKCTLCNFVTSVG 120

[Close]

BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-41
Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YP GATS+CC +C TV+ VP P G EMA+LVC GCHTLL++ RGAT
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAP-GTEMAQLVCGGCHTLLMYIRGAT 122

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC TVN A +ANQ A +NC NCRMLLMYQ GA SV+C +CNFVT VG
Sbjct: 123 SVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 173

[Close]

BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-40
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGAT
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVP-PPGTEMAQLVCGGCHTLLMYIRGAT 91

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV+C +CNFVT VG
Sbjct: 92  SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-30
Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VC GC+N+L+YP GA S+CC +CH VS      G+++A L+C GC TLL+++R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SV+CSCC TVN     +  A +NC  C+ +LMY  GA SV+C +CNF+T  G
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTG 113

[Close]

BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-28
Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAG-LEMARLVCKGCHTLLLFSRGA 60
           QS++VC GC+++L YP GA S+CC LC  ++ VP PA  +EMA L+C GC TLL+++R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 61  TSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
            +V+CSCC TVN     N  A ++C  CR  LMY  GA SV+C +C+++T  G
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTG 114

[Close]

BLAST of MS014680 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-26
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGA 60
           Q ++VC GC+NLL+YP GA+++ C LC+T++ V P P   +MA ++C GC T+L+++RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 61  TSVQCSCCRTVN---------SASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTL 112
           +SV+CSCC+T N         + + ++Q A+INC +CR  LMY  GA SV+C +C FVT 
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A6J1CWA3 (protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.3e-56
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QSRMVCSGCKNLLIYPVGATSICCTLCH+VSPVPTP GLEMARLVCKGCHTLLLFSRGAT
Sbjct: 10  QSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTP-GLEMARLVCKGCHTLLLFSRGAT 69

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG
Sbjct: 70  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 120

[Close]

BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A1S3BKC0 (protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           Q++++CSGCKN+LIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGAT
Sbjct: 60  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPT-SGLTMARLVCSGCYTLLMYSRGAT 119

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCCRT+N+ASKANQ A  NC NCR+LLMYQC AHSV+CTLCNFVT VG
Sbjct: 120 SVQCSCCRTINAASKANQMAHTNCGNCRVLLMYQCEAHSVKCTLCNFVTSVG 170

[Close]

BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A1S3BJQ2 (protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           Q++++CSGCKN+LIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGAT
Sbjct: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPT-SGLTMARLVCSGCYTLLMYSRGAT 69

Query: 61  SVQCSCCRTVNSASK-------------ANQTAEINCRNCRMLLMYQCGAHSVRCTLCNF 113
           SVQCSCCRT+N+ASK             ANQ A  NC NCR+LLMYQC AHSV+CTLCNF
Sbjct: 70  SVQCSCCRTINAASKESYQIDFELWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCNF 129

[Close]

BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A6P6TW30 (protein LOL1 isoform X1 OS=Coffea arabica OX=13443 GN=LOC113704304 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP PAG EMA+LVC GCHTLL++ RGAT
Sbjct: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPAGTEMAQLVCGGCHTLLMYIRGAT 82

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC T+N A +ANQ A +NC NCRMLLMYQ GA SV+C +CNFVT +G
Sbjct: 83  SVQCSCCHTINLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSIG 134

[Close]

BLAST of MS014680 vs. ExPASy TrEMBL
Match: A0A4Y7KPP1 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_049613 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 80/112 (71.43%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YPVGATS+CC +C+ V+PVP P G EMA+LVC GCHTLL++ RGAT
Sbjct: 23  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTPVP-PPGTEMAQLVCAGCHTLLMYIRGAT 82

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC T+N A +ANQ A +NC NCRMLLMYQ GA SV+CT+CNFVT VG
Sbjct: 83  SVQCSCCHTINLAMEANQVAHVNCGNCRMLLMYQYGARSVKCTVCNFVTSVG 133

[Close]

BLAST of MS014680 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-41
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGAT
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVP-PPGTEMAQLVCGGCHTLLMYIRGAT 91

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV+C +CNFVT VG
Sbjct: 92  SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of MS014680 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-41
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGAT
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVP-PPGTEMAQLVCGGCHTLLMYIRGAT 124

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV+C +CNFVT VG
Sbjct: 125 SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 175

[Close]

BLAST of MS014680 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-41
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGAT 60
           QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGAT
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVP-PPGTEMAQLVCGGCHTLLMYIRGAT 91

Query: 61  SVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 113
           SVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV+C +CNFVT VG
Sbjct: 92  SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of MS014680 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-27
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGA 60
           Q ++VC GC+NLL+YP GA+++ C LC+T++ V P P   +MA ++C GC T+L+++RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 61  TSVQCSCCRTVN---------SASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTL 112
           +SV+CSCC+T N         + + ++Q A+INC +CR  LMY  GA SV+C +C FVT 
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of MS014680 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-27
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGA 60
           Q ++VC GC+NLL+YP GA+++ C LC+T++ V P P   +MA ++C GC T+L+++RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 61  TSVQCSCCRTVN---------SASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTL 112
           +SV+CSCC+T N         + + ++Q A+INC +CR  LMY  GA SV+C +C FVT 
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of MS014680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145337.1	1.5e-55	98.21	protein LSD1-like [Momordica charantia]	[more]
XP_008448703.1	2.3e-43	76.79	PREDICTED: protein LOL1 isoform X1 [Cucumis melo]	[more]
XP_031738784.1	5.0e-43	76.79	protein LSD1 [Cucumis sativus]	[more]
KAE8650032.1	5.0e-43	76.79	hypothetical protein Csa_010851 [Cucumis sativus]	[more]
XP_038903355.1	6.6e-43	78.57	protein LSD1-like [Benincasa hispida]	[more]

BLAST of MS014680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	2.9e-41	70.54	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	1.9e-40	69.64	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	3.9e-30	50.89	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	8.1e-28	49.56	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	3.4e-26	47.11	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of MS014680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWA3	7.3e-56	98.21	protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1	[more]
A0A1S3BKC0	1.1e-43	76.79	protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A1S3BJQ2	6.6e-41	68.80	protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A6P6TW30	1.5e-40	69.64	protein LOL1 isoform X1 OS=Coffea arabica OX=13443 GN=LOC113704304 PE=4 SV=1	[more]
A0A4Y7KPP1	2.5e-40	71.43	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_049613 PE=4 SV=1	[more]

BLAST of MS014680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	1.3e-41	69.64	lsd one like 1	[more]
AT1G32540.1	1.3e-41	69.64	lsd one like 1	[more]
AT1G32540.3	1.3e-41	69.64	lsd one like 1	[more]
AT4G20380.2	2.4e-27	47.11	LSD1 zinc finger family protein	[more]
AT4G20380.1	2.4e-27	47.11	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 4..31 e-value: 1.4E-10 score: 38.6 coord: 82..111 e-value: 3.4E-10 score: 37.4 coord: 44..71 e-value: 5.2E-10 score: 36.8
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 46..70 e-value: 6.5E-10 score: 38.7 coord: 84..108 e-value: 1.6E-9 score: 37.4 coord: 6..30 e-value: 5.8E-10 score: 38.8
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 1..112
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014680.1	MS014680.1	mRNA