MS009587 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV Homology
BLAST of MS009587 vs. NCBI nr
Match: KAG7013994.1 (E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 69.3 bits (168), Expect = 6.5e-09 Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0
BLAST of MS009587 vs. NCBI nr
Match: RXI06130.1 (hypothetical protein DVH24_018172 [Malus domestica]) HSP 1 Score: 62.4 bits (150), Expect = 8.0e-07 Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of MS009587 vs. NCBI nr
Match: CAA2615794.1 (unnamed protein product [Spirodela intermedia]) HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0
BLAST of MS009587 vs. NCBI nr
Match: CAA7390782.1 (unnamed protein product [Spirodela intermedia]) HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0
BLAST of MS009587 vs. NCBI nr
Match: XP_022754807.1 (RING-H2 finger protein ATL64-like [Durio zibethinus]) HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06 Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0
BLAST of MS009587 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.9e-07 Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0
BLAST of MS009587 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.7e-07 Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0
BLAST of MS009587 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 4.9e-07 Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0
BLAST of MS009587 vs. ExPASy Swiss-Prot
Match: Q9M0R5 (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 6.4e-07 Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 0
BLAST of MS009587 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06 Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0
BLAST of MS009587 vs. ExPASy TrEMBL
Match: A0A498KCR5 (RING-type E3 ubiquitin transferase OS=Malus domestica OX=3750 GN=DVH24_018172 PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07 Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of MS009587 vs. ExPASy TrEMBL
Match: A0A7I8ICK8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002040 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 8.6e-07 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0
BLAST of MS009587 vs. ExPASy TrEMBL
Match: A0A7I8K1G1 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002210 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 8.6e-07 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0
BLAST of MS009587 vs. ExPASy TrEMBL
Match: A0A6P5ZQG7 (RING-type E3 ubiquitin transferase OS=Durio zibethinus OX=66656 GN=LOC111303067 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 8.6e-07 Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0
BLAST of MS009587 vs. ExPASy TrEMBL
Match: A0A6A6LZQ7 (RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_007934 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06 Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0
BLAST of MS009587 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 2.0e-08 Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0
BLAST of MS009587 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein ) HSP 1 Score: 53.9 bits (128), Expect = 2.6e-08 Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0
BLAST of MS009587 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein ) HSP 1 Score: 53.5 bits (127), Expect = 3.5e-08 Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0
BLAST of MS009587 vs. TAIR 10
Match: AT4G09120.1 (RING/U-box superfamily protein ) HSP 1 Score: 53.1 bits (126), Expect = 4.5e-08 Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 0
BLAST of MS009587 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein ) HSP 1 Score: 52.4 bits (124), Expect = 7.7e-08 Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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