MS009587.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009587.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type E3 ubiquitin transferase
Location	scaffold813: 2529166 .. 2529258 (-)
Sequence length	93
RNA-Seq Expression	MS009587.1
Synteny	MS009587.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA

mRNA sequence

TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA

Coding sequence (CDS)

TGTGTTTTGTGCTTGTCACCTTTTGAAGATGGAGAGCGCTTACGGCAGCTTCCCAGCTGCAACCATGTATTTCATGCTCCATGTATCGACGTA

Protein sequence

CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV

Homology

[Close]

BLAST of MS009587.1 vs. NCBI nr
Match: KAG7013994.1 (E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-09
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CVLCLSPFEDGE +RQLPSCNHVFHA CIDV
Sbjct: 77  CVLCLSPFEDGECIRQLPSCNHVFHASCIDV 107

[Close]

BLAST of MS009587.1 vs. NCBI nr
Match: RXI06130.1 (hypothetical protein DVH24_018172 [Malus domestica])

HSP 1 Score: 62.4 bits (150), Expect = 8.0e-07
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CV+CLS FEDGE +R+LP+CNH FHAPCID+
Sbjct: 79  CVVCLSVFEDGEEVRKLPTCNHSFHAPCIDM 109

[Close]

BLAST of MS009587.1 vs. NCBI nr
Match: CAA2615794.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CV+CLS FE+GERLRQLP C+HVFH  CIDV
Sbjct: 108 CVVCLSGFEEGERLRQLPRCSHVFHIDCIDV 138

[Close]

BLAST of MS009587.1 vs. NCBI nr
Match: CAA7390782.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CV+CLS FE+GERLRQLP C+HVFH  CIDV
Sbjct: 108 CVVCLSGFEEGERLRQLPRCSHVFHIDCIDV 138

[Close]

BLAST of MS009587.1 vs. NCBI nr
Match: XP_022754807.1 (RING-H2 finger protein ATL64-like [Durio zibethinus])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C +CLS FEDGE +RQLP CNH FHAPCID
Sbjct: 101 CAVCLSVFEDGEEVRQLPRCNHSFHAPCID 130

[Close]

BLAST of MS009587.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-07
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C +CLS FE+ E LR LP CNH FH PCID
Sbjct: 142 CSVCLSEFEENESLRLLPKCNHAFHLPCID 171

[Close]

BLAST of MS009587.1 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-07
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C++CL  FEDGE++R LP CNH FH  CID
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCID 143

[Close]

BLAST of MS009587.1 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-07
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C +CLS F++ E LR LP CNH FH PCID
Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCID 188

[Close]

BLAST of MS009587.1 vs. ExPASy Swiss-Prot
Match: Q9M0R5 (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-07
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           C +CLS FED E LR +P C+H FHA CIDV
Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTFHANCIDV 153

[Close]

BLAST of MS009587.1 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           CV+CLS F  GE+LR LP CNH FH  CID
Sbjct: 135 CVICLSDFVSGEQLRLLPKCNHGFHVRCID 164

[Close]

BLAST of MS009587.1 vs. ExPASy TrEMBL
Match: A0A498KCR5 (RING-type E3 ubiquitin transferase OS=Malus domestica OX=3750 GN=DVH24_018172 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CV+CLS FEDGE +R+LP+CNH FHAPCID+
Sbjct: 79  CVVCLSVFEDGEEVRKLPTCNHSFHAPCIDM 109

[Close]

BLAST of MS009587.1 vs. ExPASy TrEMBL
Match: A0A7I8ICK8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002040 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-07
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CV+CLS FE+GERLRQLP C+HVFH  CIDV
Sbjct: 108 CVVCLSGFEEGERLRQLPRCSHVFHIDCIDV 138

[Close]

BLAST of MS009587.1 vs. ExPASy TrEMBL
Match: A0A7I8K1G1 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002210 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-07
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           CV+CLS FE+GERLRQLP C+HVFH  CIDV
Sbjct: 108 CVVCLSGFEEGERLRQLPRCSHVFHIDCIDV 138

[Close]

BLAST of MS009587.1 vs. ExPASy TrEMBL
Match: A0A6P5ZQG7 (RING-type E3 ubiquitin transferase OS=Durio zibethinus OX=66656 GN=LOC111303067 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-07
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C +CLS FEDGE +RQLP CNH FHAPCID
Sbjct: 101 CAVCLSVFEDGEEVRQLPRCNHSFHAPCID 130

[Close]

BLAST of MS009587.1 vs. ExPASy TrEMBL
Match: A0A6A6LZQ7 (RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_007934 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           C +CLS FE+GE +RQLP CNH FHAPCID+
Sbjct: 98  CAVCLSVFEEGEEIRQLPGCNHSFHAPCIDM 128

[Close]

BLAST of MS009587.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-08
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C +CLS FE+ E LR LP CNH FH PCID
Sbjct: 142 CSVCLSEFEENESLRLLPKCNHAFHLPCID 171

[Close]

BLAST of MS009587.1 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-08
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C++CL  FEDGE++R LP CNH FH  CID
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCID 143

[Close]

BLAST of MS009587.1 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-08
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           C +CLS F++ E LR LP CNH FH PCID
Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCID 188

[Close]

BLAST of MS009587.1 vs. TAIR 10
Match: AT4G09120.1 (RING/U-box superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-08
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCIDV 32
           C +CLS FED E LR +P C+H FHA CIDV
Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTFHANCIDV 153

[Close]

BLAST of MS009587.1 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-08
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 1   CVLCLSPFEDGERLRQLPSCNHVFHAPCID 31
           CV+CLS F  GE+LR LP CNH FH  CID
Sbjct: 135 CVICLSDFVSGEQLRLLPKCNHGFHVRCID 164

The following BLAST results are available for this feature:

BLAST of MS009587.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013994.1	6.5e-09	90.32	E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyros...	[more]
RXI06130.1	8.0e-07	74.19	hypothetical protein DVH24_018172 [Malus domestica]	[more]
CAA2615794.1	1.8e-06	77.42	unnamed protein product [Spirodela intermedia]	[more]
CAA7390782.1	1.8e-06	77.42	unnamed protein product [Spirodela intermedia]	[more]
XP_022754807.1	1.8e-06	76.67	RING-H2 finger protein ATL64-like [Durio zibethinus]	[more]

BLAST of MS009587.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	2.9e-07	66.67	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SG96	3.7e-07	63.33	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9SRQ8	4.9e-07	63.33	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q9M0R5	6.4e-07	64.52	Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 P...	[more]
P0C034	1.1e-06	66.67	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of MS009587.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498KCR5	3.9e-07	74.19	RING-type E3 ubiquitin transferase OS=Malus domestica OX=3750 GN=DVH24_018172 PE...	[more]
A0A7I8ICK8	8.6e-07	77.42	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002040 PE=4 SV...	[more]
A0A7I8K1G1	8.6e-07	77.42	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002210 PE=4 SV...	[more]
A0A6P5ZQG7	8.6e-07	76.67	RING-type E3 ubiquitin transferase OS=Durio zibethinus OX=66656 GN=LOC111303067 ...	[more]
A0A6A6LZQ7	1.1e-06	70.97	RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_00793...	[more]

BLAST of MS009587.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	2.0e-08	66.67	RING/U-box superfamily protein	[more]
AT3G10910.1	2.6e-08	63.33	RING/U-box superfamily protein	[more]
AT3G03550.1	3.5e-08	63.33	RING/U-box superfamily protein	[more]
AT4G09120.1	4.5e-08	64.52	RING/U-box superfamily protein	[more]
AT1G49220.1	7.7e-08	66.67	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 1..29 e-value: 3.7E-11 score: 42.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..31 e-value: 3.1E-11 score: 44.6
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 1..31
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 1..31
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009587	MS009587	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009587.1-cds	MS009587.1-cds-scaffold813:2529166..2529258	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009587.1	MS009587.1-protein	polypeptide