Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGAATAAGAAGGTCGCAAGCACCATGATCTCCCTCCTCTTCCTCCTCTCATCATTCTCCTTCATCATCTTCGCAATCTTCATTCTCTTCCTACACAGCGTCGTTTTCGAGGTCCGAGTCATCAATGGCTTCCAAAACAACTCGTCGCTGCCGCTGGTCATATGGTGCTCCTCCAAACACAGCGACCTGGGCGGTAGGGCGCTGCAGGAGCACGACGACTTCGGCTGGCGCGTCACCACCACGCTCTGGAACGCCGACCACCACCGCTTCTCTTGTACCATCAAATGGGACTCCAAGAGAAAGTCCTTCGATGCGTTTAAGGTTCCAAGAGATTTCTACCGATGTCGGGTTTTCAACAAGTGTTCTTGGCTTGTCACGGAACATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAAAAGGATTTTCAGTGG
mRNA sequence
AAGAAGAATAAGAAGGTCGCAAGCACCATGATCTCCCTCCTCTTCCTCCTCTCATCATTCTCCTTCATCATCTTCGCAATCTTCATTCTCTTCCTACACAGCGTCGTTTTCGAGGTCCGAGTCATCAATGGCTTCCAAAACAACTCGTCGCTGCCGCTGGTCATATGGTGCTCCTCCAAACACAGCGACCTGGGCGGTAGGGCGCTGCAGGAGCACGACGACTTCGGCTGGCGCGTCACCACCACGCTCTGGAACGCCGACCACCACCGCTTCTCTTGTACCATCAAATGGGACTCCAAGAGAAAGTCCTTCGATGCGTTTAAGGTTCCAAGAGATTTCTACCGATGTCGGGTTTTCAACAAGTGTTCTTGGCTTGTCACGGAACATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAAAAGGATTTTCAGTGG
Coding sequence (CDS)
AAGAAGAATAAGAAGGTCGCAAGCACCATGATCTCCCTCCTCTTCCTCCTCTCATCATTCTCCTTCATCATCTTCGCAATCTTCATTCTCTTCCTACACAGCGTCGTTTTCGAGGTCCGAGTCATCAATGGCTTCCAAAACAACTCGTCGCTGCCGCTGGTCATATGGTGCTCCTCCAAACACAGCGACCTGGGCGGTAGGGCGCTGCAGGAGCACGACGACTTCGGCTGGCGCGTCACCACCACGCTCTGGAACGCCGACCACCACCGCTTCTCTTGTACCATCAAATGGGACTCCAAGAGAAAGTCCTTCGATGCGTTTAAGGTTCCAAGAGATTTCTACCGATGTCGGGTTTTCAACAAGTGTTCTTGGCTTGTCACGGAACATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAAAAGGATTTTCAGTGG
Protein sequence
KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNKCSWLVTEHGFYFSPDEVNWKKDFQW
Homology
BLAST of MS007792 vs. NCBI nr
Match:
XP_022138737.1 (S-protein homolog 5 [Momordica charantia])
HSP 1 Score: 307.8 bits (787), Expect = 5.1e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 60
KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK
Sbjct: 2 KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 61
Query: 61 HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 120
HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN
Sbjct: 62 HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 121
Query: 121 KCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTEHGFYFSPDEVNWKKDFQW
Sbjct: 122 KCSWLVTEHGFYFSPDEVNWKKDFQW 147
BLAST of MS007792 vs. NCBI nr
Match:
XP_038875976.1 (S-protein homolog 5-like isoform X1 [Benincasa hispida])
HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0
Query: 2 KNKKVASTMISLLFLLSSFSFIIFAIF--ILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
K KK+ ST++ +LF SSFSF +F I +LH VVFEVRVINGF+NNSSLPLVIWCSS
Sbjct: 15 KKKKILSTIL-VLFFFSSFSFFMFIIHPDRFYLHDVVFEVRVINGFRNNSSLPLVIWCSS 74
Query: 62 KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
K SDLGGRALQEHDDF W+VTT LW + ++FSCT+KWD+KR+SFDAFKVPRDFYRC F
Sbjct: 75 KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRRSFDAFKVPRDFYRCGNF 134
Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTE GFYFSPDEVNWKKDFQW
Sbjct: 135 KKCSWLVTEDGFYFSPDEVNWKKDFQW 158
BLAST of MS007792 vs. NCBI nr
Match:
XP_016902587.1 (PREDICTED: uncharacterized protein LOC103499490 [Cucumis melo] >KAA0032040.1 self-incompatibility family protein [Cucumis melo var. makuwa] >TYK16860.1 self-incompatibility family protein [Cucumis melo var. makuwa])
HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 109/147 (74.15%), Postives = 124/147 (84.35%), Query Frame = 0
Query: 2 KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
K KK T++ LLF S+FSFI+F + L+LH V+FEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2 KKKKFLGTIL-LLFSFSAFSFIVFIVQPDRLYLHGVIFEVRVINGFKNNSSLPLVIWCSS 61
Query: 62 KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
K SDLGGRALQEHDDF W+VTT LW + ++FSCT+KWD+KRKSFDAFKVPRDFYRC F
Sbjct: 62 KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRKSFDAFKVPRDFYRCGNF 121
Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTE GFYFSPDE+NWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEINWKKDFQW 145
BLAST of MS007792 vs. NCBI nr
Match:
XP_023000578.1 (S-protein homolog 5 [Cucurbita maxima])
HSP 1 Score: 225.3 bits (573), Expect = 3.4e-55
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0
Query: 4 KKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 63
KK+ +T++ LLF +S+FSF IF I L+LH VV+EVRVINGF NNSSLPLVIWCSSK
Sbjct: 3 KKILNTILLLLF-VSAFSFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKD 62
Query: 64 SDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNK 123
SDLGGRALQEHDDF WRVTT LWN ++F CT+KWD+KRKSFDAFKVPRDFYRC +F K
Sbjct: 63 SDLGGRALQEHDDFSWRVTTKLWNT--NQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKK 122
Query: 124 CSWLVTEHGFYFSPDEVNWKKDFQW 147
CSWLV E GFYFSPDEVNWKKDFQW
Sbjct: 123 CSWLVREDGFYFSPDEVNWKKDFQW 144
BLAST of MS007792 vs. NCBI nr
Match:
XP_038875011.1 (S-protein homolog 5-like [Benincasa hispida])
HSP 1 Score: 223.8 bits (569), Expect = 9.8e-55
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0
Query: 2 KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
KNKK+ ST+I LLF ++FSF +F I L+L+ VVFEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2 KNKKILSTII-LLFFFTAFSFFMFIIQPDRLYLYGVVFEVRVINGFKNNSSLPLVIWCSS 61
Query: 62 KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
+ SDLGGRALQEHDDF W+VTT LW +FSCT+KWD+KR+SFDAFKVPRDFYRC F
Sbjct: 62 EESDLGGRALQEHDDFSWKVTTKLWK--RTKFSCTMKWDAKRRSFDAFKVPRDFYRCGNF 121
Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTE GFYFSPDEVNWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEVNWKKDFQW 145
BLAST of MS007792 vs. ExPASy TrEMBL
Match:
A0A6J1CBZ6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111009830 PE=3 SV=1)
HSP 1 Score: 307.8 bits (787), Expect = 2.5e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 60
KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK
Sbjct: 2 KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 61
Query: 61 HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 120
HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN
Sbjct: 62 HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 121
Query: 121 KCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTEHGFYFSPDEVNWKKDFQW
Sbjct: 122 KCSWLVTEHGFYFSPDEVNWKKDFQW 147
BLAST of MS007792 vs. ExPASy TrEMBL
Match:
A0A5D3CZS1 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001360 PE=3 SV=1)
HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 109/147 (74.15%), Postives = 124/147 (84.35%), Query Frame = 0
Query: 2 KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
K KK T++ LLF S+FSFI+F + L+LH V+FEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2 KKKKFLGTIL-LLFSFSAFSFIVFIVQPDRLYLHGVIFEVRVINGFKNNSSLPLVIWCSS 61
Query: 62 KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
K SDLGGRALQEHDDF W+VTT LW + ++FSCT+KWD+KRKSFDAFKVPRDFYRC F
Sbjct: 62 KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRKSFDAFKVPRDFYRCGNF 121
Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTE GFYFSPDE+NWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEINWKKDFQW 145
BLAST of MS007792 vs. ExPASy TrEMBL
Match:
A0A1S4E2Y6 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103499490 PE=3 SV=1)
HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 109/147 (74.15%), Postives = 124/147 (84.35%), Query Frame = 0
Query: 2 KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
K KK T++ LLF S+FSFI+F + L+LH V+FEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2 KKKKFLGTIL-LLFSFSAFSFIVFIVQPDRLYLHGVIFEVRVINGFKNNSSLPLVIWCSS 61
Query: 62 KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
K SDLGGRALQEHDDF W+VTT LW + ++FSCT+KWD+KRKSFDAFKVPRDFYRC F
Sbjct: 62 KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRKSFDAFKVPRDFYRCGNF 121
Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
KCSWLVTE GFYFSPDE+NWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEINWKKDFQW 145
BLAST of MS007792 vs. ExPASy TrEMBL
Match:
A0A6J1KN10 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111494815 PE=3 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0
Query: 4 KKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 63
KK+ +T++ LLF +S+FSF IF I L+LH VV+EVRVINGF NNSSLPLVIWCSSK
Sbjct: 3 KKILNTILLLLF-VSAFSFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKD 62
Query: 64 SDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNK 123
SDLGGRALQEHDDF WRVTT LWN ++F CT+KWD+KRKSFDAFKVPRDFYRC +F K
Sbjct: 63 SDLGGRALQEHDDFSWRVTTKLWNT--NQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKK 122
Query: 124 CSWLVTEHGFYFSPDEVNWKKDFQW 147
CSWLV E GFYFSPDEVNWKKDFQW
Sbjct: 123 CSWLVREDGFYFSPDEVNWKKDFQW 144
BLAST of MS007792 vs. ExPASy TrEMBL
Match:
A0A6J1HNC1 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111464494 PE=3 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 8.1e-55
Identity = 109/145 (75.17%), Postives = 119/145 (82.07%), Query Frame = 0
Query: 4 KKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 63
KK +I LL +S+FSF IF I L+LH VV+EVRVINGF NNSSLPLVIWCSSK
Sbjct: 2 KKKILNVILLLLFVSAFSFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKD 61
Query: 64 SDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNK 123
SDLGGRALQEHDDF WRVTT LWN ++F CT+KWD+KRKSFDAFKVPRDFYRC +F K
Sbjct: 62 SDLGGRALQEHDDFSWRVTTKLWNT--NQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKK 121
Query: 124 CSWLVTEHGFYFSPDEVNWKKDFQW 147
CSWLV E GFYFSPDEVNWKKDFQW
Sbjct: 122 CSWLVREDGFYFSPDEVNWKKDFQW 144
BLAST of MS007792 vs. TAIR 10
Match:
AT3G24060.1 (Plant self-incompatibility protein S1 family )
HSP 1 Score: 151.0 bits (380), Expect = 7.5e-37
Identity = 82/143 (57.34%), Postives = 97/143 (67.83%), Query Frame = 0
Query: 9 TMISLLFLLSSFSF-IIFAIFI----LFLHSVVFEVRVINGFQNNSSLPLVIWCSSKHSD 68
T+I LLF+L + S IIF + + +FL F+VRVIN F++NSSLPLVIWC+S D
Sbjct: 6 TIILLLFMLIAISLTIIFTLMLQPQTMFL-GEEFDVRVINSFRDNSSLPLVIWCTSPQGD 65
Query: 69 LGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNKCS 128
LGGRALQE DDF W LW+ ++CT+KWDSKRK F+AFKV RD RC KCS
Sbjct: 66 LGGRALQEGDDFEWTAKIDLWSW-MAEYTCTMKWDSKRKQFEAFKVSRDSNRCGSTKKCS 125
Query: 129 WLVTEHGFYFSPDEVNWKKDFQW 147
W V E GFYFS DEV W KDF W
Sbjct: 126 WSVREDGFYFSSDEVYWTKDFSW 146
BLAST of MS007792 vs. TAIR 10
Match:
AT1G26798.1 (Plant self-incompatibility protein S1 family )
HSP 1 Score: 45.8 bits (107), Expect = 3.4e-05
Identity = 44/138 (31.88%), Postives = 63/138 (45.65%), Query Frame = 0
Query: 3 NKKVASTMISLLFLL-SSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 62
N + S +I+ L + +S +F + + L V +IN N LV+ C +K
Sbjct: 6 NHQFISVLITTLVIFKTSLAFENYTSVDVDLPFAPKHVIIINTL--NPHERLVVHCRNKG 65
Query: 63 SDLGGRAL--QEHDDFGWRV----TTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRD--- 122
DLG AL QE DF +RV TTT ++CT W K+FD F+V RD
Sbjct: 66 KDLGVHALEPQEQIDFRFRVNLRRTTT--------YTCTFSWPGNAKTFDIFRVDRDDNS 125
Query: 123 FYRCRVFNKCSWLVTEHG 131
C + +C W + E G
Sbjct: 126 KSTCGICRECIWYICETG 133
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CBZ6 | 2.5e-80 | 100.00 | S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111009830 PE=3 SV=1 | [more] |
A0A5D3CZS1 | 1.2e-55 | 74.15 | S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001... | [more] |
A0A1S4E2Y6 | 1.2e-55 | 74.15 | S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103499490 PE=3 SV=1 | [more] |
A0A6J1KN10 | 1.6e-55 | 75.86 | S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111494815 PE=3 SV=1 | [more] |
A0A6J1HNC1 | 8.1e-55 | 75.17 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111464494 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G24060.1 | 7.5e-37 | 57.34 | Plant self-incompatibility protein S1 family | [more] |
AT1G26798.1 | 3.4e-05 | 31.88 | Plant self-incompatibility protein S1 family | [more] |