MS007792 (gene) Bitter gourd (TR) v1

Overview


Name	MS007792
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	S-protein homolog
Location	scaffold13: 1256687 .. 1257124 (-)
RNA-Seq Expression	MS007792
Synteny	MS007792

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGAATAAGAAGGTCGCAAGCACCATGATCTCCCTCCTCTTCCTCCTCTCATCATTCTCCTTCATCATCTTCGCAATCTTCATTCTCTTCCTACACAGCGTCGTTTTCGAGGTCCGAGTCATCAATGGCTTCCAAAACAACTCGTCGCTGCCGCTGGTCATATGGTGCTCCTCCAAACACAGCGACCTGGGCGGTAGGGCGCTGCAGGAGCACGACGACTTCGGCTGGCGCGTCACCACCACGCTCTGGAACGCCGACCACCACCGCTTCTCTTGTACCATCAAATGGGACTCCAAGAGAAAGTCCTTCGATGCGTTTAAGGTTCCAAGAGATTTCTACCGATGTCGGGTTTTCAACAAGTGTTCTTGGCTTGTCACGGAACATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAAAAGGATTTTCAGTGG

mRNA sequence

AAGAAGAATAAGAAGGTCGCAAGCACCATGATCTCCCTCCTCTTCCTCCTCTCATCATTCTCCTTCATCATCTTCGCAATCTTCATTCTCTTCCTACACAGCGTCGTTTTCGAGGTCCGAGTCATCAATGGCTTCCAAAACAACTCGTCGCTGCCGCTGGTCATATGGTGCTCCTCCAAACACAGCGACCTGGGCGGTAGGGCGCTGCAGGAGCACGACGACTTCGGCTGGCGCGTCACCACCACGCTCTGGAACGCCGACCACCACCGCTTCTCTTGTACCATCAAATGGGACTCCAAGAGAAAGTCCTTCGATGCGTTTAAGGTTCCAAGAGATTTCTACCGATGTCGGGTTTTCAACAAGTGTTCTTGGCTTGTCACGGAACATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAAAAGGATTTTCAGTGG

Coding sequence (CDS)

AAGAAGAATAAGAAGGTCGCAAGCACCATGATCTCCCTCCTCTTCCTCCTCTCATCATTCTCCTTCATCATCTTCGCAATCTTCATTCTCTTCCTACACAGCGTCGTTTTCGAGGTCCGAGTCATCAATGGCTTCCAAAACAACTCGTCGCTGCCGCTGGTCATATGGTGCTCCTCCAAACACAGCGACCTGGGCGGTAGGGCGCTGCAGGAGCACGACGACTTCGGCTGGCGCGTCACCACCACGCTCTGGAACGCCGACCACCACCGCTTCTCTTGTACCATCAAATGGGACTCCAAGAGAAAGTCCTTCGATGCGTTTAAGGTTCCAAGAGATTTCTACCGATGTCGGGTTTTCAACAAGTGTTCTTGGCTTGTCACGGAACATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAAAAGGATTTTCAGTGG

Protein sequence

KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNKCSWLVTEHGFYFSPDEVNWKKDFQW

Homology

[Close]

BLAST of MS007792 vs. NCBI nr
Match: XP_022138737.1 (S-protein homolog 5 [Momordica charantia])

HSP 1 Score: 307.8 bits (787), Expect = 5.1e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 60
           KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK
Sbjct: 2   KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 61

Query: 61  HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 120
           HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN
Sbjct: 62  HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 121

Query: 121 KCSWLVTEHGFYFSPDEVNWKKDFQW 147
           KCSWLVTEHGFYFSPDEVNWKKDFQW
Sbjct: 122 KCSWLVTEHGFYFSPDEVNWKKDFQW 147

[Close]

BLAST of MS007792 vs. NCBI nr
Match: XP_038875976.1 (S-protein homolog 5-like isoform X1 [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 2   KNKKVASTMISLLFLLSSFSFIIFAIF--ILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
           K KK+ ST++ +LF  SSFSF +F I     +LH VVFEVRVINGF+NNSSLPLVIWCSS
Sbjct: 15  KKKKILSTIL-VLFFFSSFSFFMFIIHPDRFYLHDVVFEVRVINGFRNNSSLPLVIWCSS 74

Query: 62  KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
           K SDLGGRALQEHDDF W+VTT LW +  ++FSCT+KWD+KR+SFDAFKVPRDFYRC  F
Sbjct: 75  KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRRSFDAFKVPRDFYRCGNF 134

Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
            KCSWLVTE GFYFSPDEVNWKKDFQW
Sbjct: 135 KKCSWLVTEDGFYFSPDEVNWKKDFQW 158

[Close]

BLAST of MS007792 vs. NCBI nr
Match: XP_016902587.1 (PREDICTED: uncharacterized protein LOC103499490 [Cucumis melo] >KAA0032040.1 self-incompatibility family protein [Cucumis melo var. makuwa] >TYK16860.1 self-incompatibility family protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 109/147 (74.15%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 2   KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
           K KK   T++ LLF  S+FSFI+F +    L+LH V+FEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2   KKKKFLGTIL-LLFSFSAFSFIVFIVQPDRLYLHGVIFEVRVINGFKNNSSLPLVIWCSS 61

Query: 62  KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
           K SDLGGRALQEHDDF W+VTT LW +  ++FSCT+KWD+KRKSFDAFKVPRDFYRC  F
Sbjct: 62  KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRKSFDAFKVPRDFYRCGNF 121

Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
            KCSWLVTE GFYFSPDE+NWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEINWKKDFQW 145

[Close]

BLAST of MS007792 vs. NCBI nr
Match: XP_023000578.1 (S-protein homolog 5 [Cucurbita maxima])

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-55
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 4   KKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 63
           KK+ +T++ LLF +S+FSF IF I    L+LH VV+EVRVINGF NNSSLPLVIWCSSK 
Sbjct: 3   KKILNTILLLLF-VSAFSFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKD 62

Query: 64  SDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNK 123
           SDLGGRALQEHDDF WRVTT LWN   ++F CT+KWD+KRKSFDAFKVPRDFYRC +F K
Sbjct: 63  SDLGGRALQEHDDFSWRVTTKLWNT--NQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKK 122

Query: 124 CSWLVTEHGFYFSPDEVNWKKDFQW 147
           CSWLV E GFYFSPDEVNWKKDFQW
Sbjct: 123 CSWLVREDGFYFSPDEVNWKKDFQW 144

[Close]

BLAST of MS007792 vs. NCBI nr
Match: XP_038875011.1 (S-protein homolog 5-like [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 9.8e-55
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 2   KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
           KNKK+ ST+I LLF  ++FSF +F I    L+L+ VVFEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2   KNKKILSTII-LLFFFTAFSFFMFIIQPDRLYLYGVVFEVRVINGFKNNSSLPLVIWCSS 61

Query: 62  KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
           + SDLGGRALQEHDDF W+VTT LW     +FSCT+KWD+KR+SFDAFKVPRDFYRC  F
Sbjct: 62  EESDLGGRALQEHDDFSWKVTTKLWK--RTKFSCTMKWDAKRRSFDAFKVPRDFYRCGNF 121

Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
            KCSWLVTE GFYFSPDEVNWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEVNWKKDFQW 145

[Close]

BLAST of MS007792 vs. ExPASy TrEMBL
Match: A0A6J1CBZ6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111009830 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.5e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 60
           KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK
Sbjct: 2   KKNKKVASTMISLLFLLSSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSK 61

Query: 61  HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 120
           HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN
Sbjct: 62  HSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFN 121

Query: 121 KCSWLVTEHGFYFSPDEVNWKKDFQW 147
           KCSWLVTEHGFYFSPDEVNWKKDFQW
Sbjct: 122 KCSWLVTEHGFYFSPDEVNWKKDFQW 147

[Close]

BLAST of MS007792 vs. ExPASy TrEMBL
Match: A0A5D3CZS1 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001360 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 109/147 (74.15%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 2   KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
           K KK   T++ LLF  S+FSFI+F +    L+LH V+FEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2   KKKKFLGTIL-LLFSFSAFSFIVFIVQPDRLYLHGVIFEVRVINGFKNNSSLPLVIWCSS 61

Query: 62  KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
           K SDLGGRALQEHDDF W+VTT LW +  ++FSCT+KWD+KRKSFDAFKVPRDFYRC  F
Sbjct: 62  KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRKSFDAFKVPRDFYRCGNF 121

Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
            KCSWLVTE GFYFSPDE+NWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEINWKKDFQW 145

[Close]

BLAST of MS007792 vs. ExPASy TrEMBL
Match: A0A1S4E2Y6 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103499490 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 109/147 (74.15%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 2   KNKKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSS 61
           K KK   T++ LLF  S+FSFI+F +    L+LH V+FEVRVINGF+NNSSLPLVIWCSS
Sbjct: 2   KKKKFLGTIL-LLFSFSAFSFIVFIVQPDRLYLHGVIFEVRVINGFKNNSSLPLVIWCSS 61

Query: 62  KHSDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVF 121
           K SDLGGRALQEHDDF W+VTT LW +  ++FSCT+KWD+KRKSFDAFKVPRDFYRC  F
Sbjct: 62  KESDLGGRALQEHDDFSWKVTTKLWKS--NQFSCTMKWDAKRKSFDAFKVPRDFYRCGNF 121

Query: 122 NKCSWLVTEHGFYFSPDEVNWKKDFQW 147
            KCSWLVTE GFYFSPDE+NWKKDFQW
Sbjct: 122 KKCSWLVTEDGFYFSPDEINWKKDFQW 145

[Close]

BLAST of MS007792 vs. ExPASy TrEMBL
Match: A0A6J1KN10 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111494815 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 4   KKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 63
           KK+ +T++ LLF +S+FSF IF I    L+LH VV+EVRVINGF NNSSLPLVIWCSSK 
Sbjct: 3   KKILNTILLLLF-VSAFSFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKD 62

Query: 64  SDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNK 123
           SDLGGRALQEHDDF WRVTT LWN   ++F CT+KWD+KRKSFDAFKVPRDFYRC +F K
Sbjct: 63  SDLGGRALQEHDDFSWRVTTKLWNT--NQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKK 122

Query: 124 CSWLVTEHGFYFSPDEVNWKKDFQW 147
           CSWLV E GFYFSPDEVNWKKDFQW
Sbjct: 123 CSWLVREDGFYFSPDEVNWKKDFQW 144

[Close]

BLAST of MS007792 vs. ExPASy TrEMBL
Match: A0A6J1HNC1 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111464494 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.1e-55
Identity = 109/145 (75.17%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 4   KKVASTMISLLFLLSSFSFIIFAI--FILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 63
           KK    +I LL  +S+FSF IF I    L+LH VV+EVRVINGF NNSSLPLVIWCSSK 
Sbjct: 2   KKKILNVILLLLFVSAFSFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKD 61

Query: 64  SDLGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNK 123
           SDLGGRALQEHDDF WRVTT LWN   ++F CT+KWD+KRKSFDAFKVPRDFYRC +F K
Sbjct: 62  SDLGGRALQEHDDFSWRVTTKLWNT--NQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKK 121

Query: 124 CSWLVTEHGFYFSPDEVNWKKDFQW 147
           CSWLV E GFYFSPDEVNWKKDFQW
Sbjct: 122 CSWLVREDGFYFSPDEVNWKKDFQW 144

[Close]

BLAST of MS007792 vs. TAIR 10
Match: AT3G24060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 151.0 bits (380), Expect = 7.5e-37
Identity = 82/143 (57.34%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 9   TMISLLFLLSSFSF-IIFAIFI----LFLHSVVFEVRVINGFQNNSSLPLVIWCSSKHSD 68
           T+I LLF+L + S  IIF + +    +FL    F+VRVIN F++NSSLPLVIWC+S   D
Sbjct: 6   TIILLLFMLIAISLTIIFTLMLQPQTMFL-GEEFDVRVINSFRDNSSLPLVIWCTSPQGD 65

Query: 69  LGGRALQEHDDFGWRVTTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRDFYRCRVFNKCS 128
           LGGRALQE DDF W     LW+     ++CT+KWDSKRK F+AFKV RD  RC    KCS
Sbjct: 66  LGGRALQEGDDFEWTAKIDLWSW-MAEYTCTMKWDSKRKQFEAFKVSRDSNRCGSTKKCS 125

Query: 129 WLVTEHGFYFSPDEVNWKKDFQW 147
           W V E GFYFS DEV W KDF W
Sbjct: 126 WSVREDGFYFSSDEVYWTKDFSW 146

[Close]

BLAST of MS007792 vs. TAIR 10
Match: AT1G26798.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-05
Identity = 44/138 (31.88%), Postives = 63/138 (45.65%), Query Frame = 0


Query: 3   NKKVASTMISLLFLL-SSFSFIIFAIFILFLHSVVFEVRVINGFQNNSSLPLVIWCSSKH 62
           N +  S +I+ L +  +S +F  +    + L      V +IN    N    LV+ C +K 
Sbjct: 6   NHQFISVLITTLVIFKTSLAFENYTSVDVDLPFAPKHVIIINTL--NPHERLVVHCRNKG 65

Query: 63  SDLGGRAL--QEHDDFGWRV----TTTLWNADHHRFSCTIKWDSKRKSFDAFKVPRD--- 122
            DLG  AL  QE  DF +RV    TTT        ++CT  W    K+FD F+V RD   
Sbjct: 66  KDLGVHALEPQEQIDFRFRVNLRRTTT--------YTCTFSWPGNAKTFDIFRVDRDDNS 125

Query: 123 FYRCRVFNKCSWLVTEHG 131
              C +  +C W + E G
Sbjct: 126 KSTCGICRECIWYICETG 133

The following BLAST results are available for this feature:

BLAST of MS007792 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138737.1	5.1e-80	100.00	S-protein homolog 5 [Momordica charantia]	[more]
XP_038875976.1	1.5e-55	74.83	S-protein homolog 5-like isoform X1 [Benincasa hispida]	[more]
XP_016902587.1	2.6e-55	74.15	PREDICTED: uncharacterized protein LOC103499490 [Cucumis melo] >KAA0032040.1 sel...	[more]
XP_023000578.1	3.4e-55	75.86	S-protein homolog 5 [Cucurbita maxima]	[more]
XP_038875011.1	9.8e-55	74.83	S-protein homolog 5-like [Benincasa hispida]	[more]

BLAST of MS007792 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007792 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBZ6	2.5e-80	100.00	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111009830 PE=3 SV=1	[more]
A0A5D3CZS1	1.2e-55	74.15	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001...	[more]
A0A1S4E2Y6	1.2e-55	74.15	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103499490 PE=3 SV=1	[more]
A0A6J1KN10	1.6e-55	75.86	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111494815 PE=3 SV=1	[more]
A0A6J1HNC1	8.1e-55	75.17	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111464494 PE=3 SV=1	[more]

BLAST of MS007792 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24060.1	7.5e-37	57.34	Plant self-incompatibility protein S1 family	[more]
AT1G26798.1	3.4e-05	31.88	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 39..146 e-value: 2.0E-19 score: 70.0
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 15..146
None	No IPR available	PANTHER	PTHR31232:SF8	BNAA01G23250D PROTEIN	coord: 15..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007792.1	MS007792.1	mRNA