MS004572 (gene) Bitter gourd (TR) v1

Overview
NameMS004572
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionreplication factor C subunit 4
Locationscaffold995: 419179 .. 423433 (+)
RNA-Seq ExpressionMS004572
SyntenyMS004572
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCATTGTCGCAGAGCTCTCAACCATGGGTGGAGAAATAGTACGTTTCACTTCTCATTCTTTCGTTTCACTAATTTCTCATAATATCATTCGTACTGTCAACCATGGGGCATTTTTGACAGTCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAAGTGGTTCGAGTGCTCACCAACACTCTCGAGACTTCTAGTGTACTTCATCGACTTCTCTTCTTTTTTCGTAGTAGTGATCGTATTTATCTTCTTAATCCAGCGTTATTTTTCTTCTCGATTGTTGGTTGAACAGTGTCCTCACATGCTTTTCTATGGACCGCCTGGTACCGGGAAAACCACCACCGCTCTCGCGATTGCTCATCAACTTTTCGGGTCCTTTTCTGCTCATATCTGTTTTTATAAAGTTGTATTTATGCGTGCCTCTTCAATTGTTATTGCTTTTTAGTAGGTTGTGAATTGATGTTTAGTAGTTCAGAATCCTTTCTAAGAAATATCTTGGATTCTCTTCATAGATGGGTTTGTAGGTTTCTAATGCGCAGTTCGCATGCTCGTATATATGTACAAAGGTTATCGGTTAAGGTTTTTGTCTGAGTTGTATATTCATGAGCTTTCTCAACTGCTGAAGTTATTAATATATCATGGCCTCACTATCTTGATGGTTGAATACTAGTTGTCAAGACTTGGGGAGGTTTTTGCTCAAAGGGACCTGTGATTTGCTTGTTTGAGAATTAAACTTCAACCTAATTCGATTTATAAAATGCCCAGACCATTGTTTTGCTGCATAAAACATTAAGGTGCTATTTGAATGTCTTTTTAAGTTCTTATCTGATATAAAAAATTTATCTGTAGCCCCGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATCAAAGATTTTGCTGGTGTTGCAGTAGGCAGTGGCCAGCGTCAAGGGTAACTTTCTTAACCTTAGCTACCATTTTCACAACATTTCTGTTATGAACTTCTCACTTATTTATTTATTTATTTATTTTAATTATTTTAGGGGTTATCCTTGTCCACCGTTCAAGATAATAATTCTGGATGAGGCTGATTCAATGACTGAAGACGCTCAGGTGTGATCATAGTCTAGATGCAATCTATTTAATTTATTAGAGTTTCTACGAGTTTAGTTTTTTCCCTGATACTGAACATTATGTAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACAAGATTCTTTTTTATATGCAACTATATCAGCAGGTGAAGCTTAGCTTCCTTTATAGTGTTTAAATATCTCTTTTTATTGTTGCTGTTGATTTACTTTTTGTATTTGTGCTTTGGATATTCACGACATGCTTCATCCTTTTATGGAGTAAATTCATGATCATAATTGATAATTCATAAGATGTTTGCATTTTTGGCCACTTATGAAGGAGCAATGAGTGAGTCGGTAGTAATTTGCTTATGGTAAAATCATTGAGACAGTGTAAGAGGGTATGTGGTTGGAATCTCTGAGAACAATAGTAGATGACTACAACCTTGGGGCGGGCACGGGAGCCCGTGGGTATAGGGGAGCAAAGTTCAAGGAAAAAAAAAAAGTAGATGGCCACAATAGTTTTTAACTAAATTGCAATTTAATTGTCTTAAAAGTTAAATTCACAATGAGTATGGGAGGTGAATTTCTGAAAACACGTGGGTGAGCACAATAATATTTAGCTAGTTGCAACTTGATTTCTATGAATATTTTGATATTCACAATCTTATGTATTAATGTATATATTTTGGCAACATTTGTACAATGTATGAAAATATTGCCTTGTCTTTCTCATGCATCCTAAATGGCCCGTACTCATATTTTTGGAATAGAGGAAAGTGATTCCTCAATTGTTTCTGGTTTCTACAATGGTCTATTTCTACTTGGCCTTGAATTTGGTGAAGCTAAACCGTCATCTTAGTGCTTTGTCTATCCGTGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCAAAATTTAGGTTTAAACCACTTTCTGAAGAGGTTATGAGCAAACGTATTTTGCACATTTGTAATGAAGAATGTCTAAGTCTAGATGGAGAGGTTTGCTCATAGTTACTTAGCATTACAAAGTATGGTTTGAAGTAAGTTATTGGCTTGACCAATGTGTTCTGAACTTACAATCTATGTAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTAGAGCTATCACATACTTACAGGTACGATTTAGTCTGCAGCATTGCACTTATTTCAGTCAACGACTTAGCTTTTGCTATCCCATGCTGAACATGCATGCATTTGGAGCTTGGATAATTAAGAGGAGACTAATCAATCGTTCTATTCTACTAGAATAAGTCGAAGTTCTATTTTAGTTTGGGGCTACATTAAACTAACCTGATTGCATGCCTTCTACGTGGAGAACAATTTACCTTTCCTGTTATTTTTGGTGATCATTTGGGATGAGAAATGTTGACCATTTGTTGCTATTGAATAGTAGAATTTATTTCCTATATAACTTACTGTACTTGTAAAATTGGAGTACCGAAAAAAATTGCATTAGGGTAGACTTCACACCAACTACGTTTGGAGTTGTACATAATGTCTAACTTCTATATCTCTCGTAACGGAAATACTTGAGGATCGGATGAGCTTCTGTTGTGTTAATAAGTAGGATCAAATTATGAGAGAATTAGATGAATAATAAATCCAATCACTCGTTGAATATTGTCAACAAGCTCAATTGTTGTAGTTATTTGTATTAGAAGTCAGCTTAGTAAGTTAAGTTACTTTTCAGGCACTCTTGGTCAGTTGACTCAATTTATAGTTGAAAATAGAATAGTTTCTATCTTTTCTAACTGCTTTCTACACTTCTTTAATAAACATTCTCATCCTTCAGCTAGCAACTGAATGTTGATATTCCTAATGGAGATTCTTGTTTTTTTCTCTCCAGTCAGCAGCACGCTTGTTTGGATCATCAATCTCTTCCAAGGATCTAATTAGTGTGTCTGGGGTTAGTTATGCAATTTTTTTATTATTTTATTATTTATTATTTTTTGAAGTCATAGCATCCTTAGAATACAAAGAAAGTAAATAGTTAAAAATGGTTATGCTTCACTTTGCTCCTTCGATGAATGTCGATCCTGACCCGTAAACAAAAAGTTTGTATATGCCTTGCCCTTATGTCCATGGCTTTCAACTTCTTTCAGAACCCAATTCCTTGGATGGCTAATGGTCCTTTCTGAAACTGTGGCATTGGAGAATGATCCTAAGTACTATTTGTGATTTTTTTTTTTTTCTTTTGGATGGTTGGATTTTTAACTAGATAATGTTTCGTATTGTAGGTTTTGTATGAGTTTTGAGTGTTCCATATTCTGCCATCAATTATTTAACTTATGCTAGATTTTTCGGCTGTTTGGCAATTTAATAGTTGATGAATTCTCTCATCTTGTTCTCAAAAGCATGCTTAATAATTTGCTTGCGACATATTTCGCACGGAATTGTCTTATATTTTGAGGACTCGTAGTATCTAACTTTTTAACACATGCAGGTTATCCCTCGAGAGGTTGTCAACGCACTATTTGCTGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTGAATAATGTAATTGCAGAGGGATATCCAGTGACTCAGATGCTTTCACAGGTTTATTCTTTTTCAATCTATATTGTGTTATTTTGTTCTTAAGGGTGGACAGAGATACGTAATACATTAATGTTTCCCTCAGATATTTGAGGTGGTTGTTGAAGCCAATGATTTGCAAGATGAACAGAAGGCTAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGGTTACTCTATCCATTTCCATGTTGAATTTCGTATTTTCTGTTCCAAAATTCATGTGATTTTTGCATTAGCTATGCTCAGATTAGCAATAGAAGTTTGTTTTTTGTTCTTTTCGAAGTTGCATTAAATAACTTATACGTCAAATATTTTTGTTTGGTTTGTTTCCCGTTTTAGTTATAAAATACGTGGATCTAAATTGAATTTTACCCCGGTAATTTTCTTGAGTGACATCTAGATCATGCAAACAAACATTTTTGTCGTGCAGTGTTTGGTTGATGGTGCAGATGAATATTTACAACTGCTCGATGTGGTTAGTCAAACAATGCAAGCCTCATGTAGTATGCAACTG

mRNA sequence

ATGGCGCCATTGTCGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAAGTGGTTCGAGTGCTCACCAACACTCTCGAGACTTCTAGTTGTCCTCACATGCTTTTCTATGGACCGCCTGGTACCGGGAAAACCACCACCGCTCTCGCGATTGCTCATCAACTTTTCGGCCCCGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATCAAAGATTTTGCTGGTGTTGCAGTAGGCAGTGGCCAGCGTCAAGGGGGTTATCCTTGTCCACCGTTCAAGATAATAATTCTGGATGAGGCTGATTCAATGACTGAAGACGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACAAGATTCTTTTTTATATGCAACTATATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCAAAATTTAGGTTTAAACCACTTTCTGAAGAGGTTATGAGCAAACGTATTTTGCACATTTGTAATGAAGAATGTCTAAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTAGAGCTATCACATACTTACAGTCAGCAGCACGCTTGTTTGGATCATCAATCTCTTCCAAGGATCTAATTAGTGTGTCTGGGGTTATCCCTCGAGAGGTTGTCAACGCACTATTTGCTGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTGAATAATGTAATTGCAGAGGGATATCCAGTGACTCAGATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCAATGATTTGCAAGATGAACAGAAGGCTAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTTTGGTTGATGGTGCAGATGAATATTTACAACTGCTCGATGTGGTTAGTCAAACAATGCAAGCCTCATGTAGTATGCAACTG

Coding sequence (CDS)

ATGGCGCCATTGTCGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAAGTGGTTCGAGTGCTCACCAACACTCTCGAGACTTCTAGTTGTCCTCACATGCTTTTCTATGGACCGCCTGGTACCGGGAAAACCACCACCGCTCTCGCGATTGCTCATCAACTTTTCGGCCCCGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATCAAAGATTTTGCTGGTGTTGCAGTAGGCAGTGGCCAGCGTCAAGGGGGTTATCCTTGTCCACCGTTCAAGATAATAATTCTGGATGAGGCTGATTCAATGACTGAAGACGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACAAGATTCTTTTTTATATGCAACTATATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCAAAATTTAGGTTTAAACCACTTTCTGAAGAGGTTATGAGCAAACGTATTTTGCACATTTGTAATGAAGAATGTCTAAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTAGAGCTATCACATACTTACAGTCAGCAGCACGCTTGTTTGGATCATCAATCTCTTCCAAGGATCTAATTAGTGTGTCTGGGGTTATCCCTCGAGAGGTTGTCAACGCACTATTTGCTGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTGAATAATGTAATTGCAGAGGGATATCCAGTGACTCAGATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCAATGATTTGCAAGATGAACAGAAGGCTAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTTTGGTTGATGGTGCAGATGAATATTTACAACTGCTCGATGTGGTTAGTCAAACAATGCAAGCCTCATGTAGTATGCAACTG

Protein sequence

MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQL
Homology
[Close]
BLAST of MS004572 vs. NCBI nr
Match: XP_022134048.1 (replication factor C subunit 4 [Momordica charantia])

HSP 1 Score: 652.5 bits (1682), Expect = 2.0e-183
Identity = 332/335 (99.10%), Postives = 332/335 (99.10%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI
Sbjct: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVVNALFAACKSGNFDLANKEVNNV AEGYPV QMLSQIFEVVVEAN LQDEQKARIC
Sbjct: 241 PREVVNALFAACKSGNFDLANKEVNNVTAEGYPVAQMLSQIFEVVVEANHLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ 336
           KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ 335

[Close]
BLAST of MS004572 vs. NCBI nr
Match: XP_038897028.1 (replication factor C subunit 4 [Benincasa hispida])

HSP 1 Score: 629.0 bits (1621), Expect = 2.3e-176
Identity = 320/336 (95.24%), Postives = 328/336 (97.62%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL+SVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVSVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ALF+ACKSGNFD+ANKEVNNV+AEGYPV QMLSQIFEVVVE NDLQDEQKARIC
Sbjct: 241 PREVVDALFSACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA  SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 336

[Close]
BLAST of MS004572 vs. NCBI nr
Match: XP_023523758.1 (replication factor C subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 625.2 bits (1611), Expect = 3.3e-175
Identity = 321/337 (95.25%), Postives = 329/337 (97.63%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE+VMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEKVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ LFAACKSGNFDLANKEVNNVIAEGYPV QMLSQIFEVV+EA+DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQA-SCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA S SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]
BLAST of MS004572 vs. NCBI nr
Match: XP_022981026.1 (replication factor C subunit 4 [Cucurbita maxima])

HSP 1 Score: 624.4 bits (1609), Expect = 5.7e-175
Identity = 321/337 (95.25%), Postives = 327/337 (97.03%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHS VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLDGEALSTL SISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ LFAACKSGNFDLANKEVNNVIAEGYPV QMLSQIFEVV+EA+DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQA-SCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA S SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]
BLAST of MS004572 vs. NCBI nr
Match: KAG6608033.1 (Replication factor C subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 623.2 bits (1606), Expect = 1.3e-174
Identity = 321/337 (95.25%), Postives = 327/337 (97.03%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ LFAACKSGNFDLANKEVNNVIAEGYPV QMLSQIFEVV+EA+DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQA-SCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA S SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]
BLAST of MS004572 vs. ExPASy Swiss-Prot
Match: Q93ZX1 (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 3.9e-158
Identity = 281/335 (83.88%), Postives = 307/335 (91.64%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAP+ QSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+T+ CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAVGS  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
            RILHICNEE LSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEA-NDLQDEQKARI 300
           P EVVN LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA +D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQASCSM 335
           CK LAE DK LVDGADEYLQLLDV S T+ A   M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 335

[Close]
BLAST of MS004572 vs. ExPASy Swiss-Prot
Match: Q9FXM3 (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 3.3e-157
Identity = 279/334 (83.53%), Postives = 307/334 (91.92%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL  SSQPWVEKYRP+QVKDVAHQ+EVVRVLT TL+T+  PHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIKDFA VAVGS  R+GGYPCPP+KIII
Sbjct: 61  AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSA-RKGGYPCPPYKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
            RILHICNEE LSLD +AL+TLS+IS GDLRRAITYLQSAARLFGSSISS DLISVSG I
Sbjct: 181 NRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAI 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           P +VV +L A+CKSG FD+ANKEVNN+IA+GYPV+Q++SQ  +V+V A+D+ DEQKARIC
Sbjct: 241 PEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSM 335
           KKL EADKCLVDGADEYLQLLDV S+T++A   M
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVASETIRALFDM 333

[Close]
BLAST of MS004572 vs. ExPASy Swiss-Prot
Match: P35249 (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2)

HSP 1 Score: 372.9 bits (956), Expect = 3.9e-102
Identity = 189/321 (58.88%), Postives = 245/321 (76.32%), Query Frame = 0 

Query: 10  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
           PWVEKYRPK V +VA Q+EVV VL  +LE +  P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98

Query: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIIILDEADSMTE 129
           EL++ RVLELNASD+RGI VVR K+K+FA + V SG R  G PCPPFKI+ILDEADSMT 
Sbjct: 99  ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 158

Query: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHICNE 189
            AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++  +R+L I  +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKK 218

Query: 190 ECLSLDGEALSTLSSISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGVIPREVVNAL 249
           E + +  E ++ L  +S+GDLR+AIT+LQSA RL  G  I+ K +  ++GVIP E ++ +
Sbjct: 219 ENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGV 278

Query: 250 FAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARICKKLAEADK 309
           FAAC+SG+FD     V ++I EG+  TQ+++Q+ +VVVE N+L D+QK+ I +KLAE DK
Sbjct: 279 FAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDK 338

Query: 310 CLVDGADEYLQLLDVVSQTMQ 330
           CL DGADE+LQL+ + +  MQ
Sbjct: 339 CLADGADEHLQLISLCATVMQ 357

[Close]
BLAST of MS004572 vs. ExPASy Swiss-Prot
Match: Q99J62 (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 8.7e-102
Identity = 186/321 (57.94%), Postives = 241/321 (75.08%), Query Frame = 0 

Query: 10  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
           PWVEKYRPK V +VA QDEVV VL  +LE +  P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39  PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98

Query: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIIILDEADSMTE 129
           EL++ RVLELNASD+RGI VVR K+K+FA + V SG R  G PCPPFKI+ILDEADSMT 
Sbjct: 99  ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 158

Query: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHICNE 189
            AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++  +R+L I  +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEK 218

Query: 190 ECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLIS-VSGVIPREVVNAL 249
           E + +  E ++ L  IS+GDLR+AIT+LQSA RL G    S+D+I+ ++GVIP   ++ +
Sbjct: 219 ENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGI 278

Query: 250 FAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARICKKLAEADK 309
           F AC SG+FD     V N+I EG+  TQ+++Q+ + ++E  +L D+ K+ I +KLAE DK
Sbjct: 279 FTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDK 338

Query: 310 CLVDGADEYLQLLDVVSQTMQ 330
           CL DGADE+LQL+ + +  MQ
Sbjct: 339 CLADGADEHLQLMSLCATVMQ 358

[Close]
BLAST of MS004572 vs. ExPASy Swiss-Prot
Match: Q54MD4 (Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=rfc4 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.3e-92
Identity = 168/324 (51.85%), Postives = 225/324 (69.44%), Query Frame = 0 

Query: 6   QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQ 65
           + ++PWV KYRPK V DV++Q++V+  L  +L T + PH+LFYGPPGTGKT+T LAIA  
Sbjct: 7   KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66

Query: 66  LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIIILDEAD 125
           ++GPEL K RVLELNASD+RGI VVRTKIK+FAG AV         P   FK+IILDEAD
Sbjct: 67  IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126

Query: 126 SMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILH 185
           SMT DAQ ALRRT+ET SK TRF  +CNYISRII+PLASRCAKFRFKPL      +R+  
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186

Query: 186 ICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPREVV 245
           I  +E +  +      +  +S GD+R+AITYLQSA R F + IS   + +++G +P +++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246

Query: 246 NALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARICKKLAE 305
             L   CK  +FD     V ++IA+GYPV+Q++SQ+F+ V+   DL   QK+ I  K+  
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306

Query: 306 ADKCLVDGADEYLQLLDVVSQTMQ 330
            D+ L+DG++E+LQL D+ S  M+
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMK 330

[Close]
BLAST of MS004572 vs. ExPASy TrEMBL
Match: A0A6J1C0Y1 (replication factor C subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006413 PE=3 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 9.5e-184
Identity = 332/335 (99.10%), Postives = 332/335 (99.10%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI
Sbjct: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVVNALFAACKSGNFDLANKEVNNV AEGYPV QMLSQIFEVVVEAN LQDEQKARIC
Sbjct: 241 PREVVNALFAACKSGNFDLANKEVNNVTAEGYPVAQMLSQIFEVVVEANHLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ 336
           KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ 335

[Close]
BLAST of MS004572 vs. ExPASy TrEMBL
Match: A0A6J1IVB8 (replication factor C subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111480296 PE=3 SV=1)

HSP 1 Score: 624.4 bits (1609), Expect = 2.8e-175
Identity = 321/337 (95.25%), Postives = 327/337 (97.03%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHS VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLDGEALSTL SISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ LFAACKSGNFDLANKEVNNVIAEGYPV QMLSQIFEVV+EA+DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQA-SCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA S SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]
BLAST of MS004572 vs. ExPASy TrEMBL
Match: A0A1S3B9T6 (LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=LOC103487609 PE=3 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 2.3e-174
Identity = 316/336 (94.05%), Postives = 325/336 (96.73%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRF FICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFXFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLDGEALSTLSS+SQGDLRRAITYLQSAARLFGSSISSKDL++VSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSMSQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ALF ACKSGNFD ANKEVNNV+AEGYPV QMLSQIFEVV+E NDLQDEQKARIC
Sbjct: 241 PREVVDALFTACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA  SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALRSMQL 336

[Close]
BLAST of MS004572 vs. ExPASy TrEMBL
Match: A0A6J1FIS1 (replication factor C subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111445849 PE=3 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 6.8e-174
Identity = 319/337 (94.66%), Postives = 326/337 (96.74%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           PREVV+ LFAAC+SGNFDLANKEVNNVIAEGYPV QMLSQIFEVV+EA+DLQDEQ A+IC
Sbjct: 241 PREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQA-SCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA S SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]
BLAST of MS004572 vs. ExPASy TrEMBL
Match: A0A0A0KYI8 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=3 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 2.0e-173
Identity = 314/336 (93.45%), Postives = 325/336 (96.73%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET++CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
           KRILHI NEE LSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL++VSG+I
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARIC 300
           P+EVV+ALF ACKSGNFD ANK+VNNV+AEGYPV QMLSQIFEVV+E NDLQDEQKARIC
Sbjct: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ   S+QL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 336

[Close]
BLAST of MS004572 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 558.9 bits (1439), Expect = 2.7e-159
Identity = 281/335 (83.88%), Postives = 307/335 (91.64%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAP+ QSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+T+ CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAVGS  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
            RILHICNEE LSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEA-NDLQDEQKARI 300
           P EVVN LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA +D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQASCSM 335
           CK LAE DK LVDGADEYLQLLDV S T+ A   M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 335

[Close]
BLAST of MS004572 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 537.3 bits (1383), Expect = 8.5e-153
Identity = 274/335 (81.79%), Postives = 300/335 (89.55%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAP+ QSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+T+ CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFG       VLELNASDDRGINVVRTKIKDFA VAVGS  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
            RILHICNEE LSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEA-NDLQDEQKARI 300
           P EVVN LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA +D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQASCSM 335
           CK LAE DK LVDGADEYLQLLDV S T+ A   M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 328

[Close]
BLAST of MS004572 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 532.3 bits (1370), Expect = 2.8e-151
Identity = 272/335 (81.19%), Postives = 296/335 (88.36%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAP+ QSSQPWVEKYRPKQVKDVAHQ+EV            CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAVGS  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
            RILHICNEE LSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEA-NDLQDEQKARI 300
           P EVVN LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA +D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQASCSM 335
           CK LAE DK LVDGADEYLQLLDV S T+ A   M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 323

[Close]
BLAST of MS004572 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 529.3 bits (1362), Expect = 2.3e-150
Identity = 263/309 (85.11%), Postives = 288/309 (93.20%), Query Frame = 0 

Query: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60
           MAP+ QSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+T+ CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAVGS  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240
            RILHICNEE LSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PREVVNALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEA-NDLQDEQKARI 300
           P EVVN LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA +D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADK 309
           CK LAE DK
Sbjct: 301 CKCLAETDK 309

[Close]
BLAST of MS004572 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 198.7 bits (504), Expect = 7.2e-51
Identity = 127/330 (38.48%), Postives = 186/330 (56.36%), Query Frame = 0 

Query: 8   SQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQLF 67
           ++PWVEKYRP +V D+   ++ V  L       + P+++  GPPGTGKTT+ LA+AH+L 
Sbjct: 14  NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73

Query: 68  GPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIIILDEADSM 127
           G   YK  VLELNASDDRGI+VVR KIK FA       Q++   P    K++ILDEADSM
Sbjct: 74  GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 133

Query: 128 TEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIC 187
           T  AQ ALRRT+E +S  TRF   CN  ++IIEP+ SRCA  RF  LS++ +  R+L + 
Sbjct: 134 TSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 193

Query: 188 NEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISV-SGVIPREVVN 247
             E +    E L  +   + GD+R+A+  LQ+    F S ++ +++  V     P  V N
Sbjct: 194 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQPHPLHVKN 253

Query: 248 ALFAACKSGNFDLANKEVNNVIAEGYPVTQMLSQIFEVVVEANDLQDEQKARICKKLAEA 307
            +    +S  FD+A   +  +   GY  T +++ +F  +++  D+ +  K    K+   A
Sbjct: 254 IVRNVLES-KFDIACDGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFA 313

Query: 308 DKCLVDGADEYLQL------LDVVSQTMQA 331
              + DG   YLQL      L +V +T +A
Sbjct: 314 HMRICDGVGSYLQLCGLLAKLSIVRETAKA 332

The following BLAST results are available for this feature:
BLAST of MS004572 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134048.12.0e-18399.10replication factor C subunit 4 [Momordica charantia][more]
XP_038897028.12.3e-17695.24replication factor C subunit 4 [Benincasa hispida][more]
XP_023523758.13.3e-17595.25replication factor C subunit 4 [Cucurbita pepo subsp. pepo][more]
XP_022981026.15.7e-17595.25replication factor C subunit 4 [Cucurbita maxima][more]
KAG6608033.11.3e-17495.25Replication factor C subunit 4, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of MS004572 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZX13.9e-15883.88Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1[more]
Q9FXM33.3e-15783.53Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 ... [more]
P352493.9e-10258.88Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2[more]
Q99J628.7e-10257.94Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1[more]
Q54MD41.3e-9251.85Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=... [more]
BLAST of MS004572 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C0Y19.5e-18499.10replication factor C subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006413 PE... [more]
A0A6J1IVB82.8e-17595.25replication factor C subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111480296 PE=3 ... [more]
A0A1S3B9T62.3e-17494.05LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=L... [more]
A0A6J1FIS16.8e-17494.66replication factor C subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111445849 PE=... [more]
A0A0A0KYI82.0e-17393.45AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=3 SV... [more]
BLAST of MS004572 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G21690.12.7e-15983.88ATPase family associated with various cellular activities (AAA) [more]
AT1G21690.48.5e-15381.79ATPase family associated with various cellular activities (AAA) [more]
AT1G21690.22.8e-15181.19ATPase family associated with various cellular activities (AAA) [more]
AT1G21690.32.3e-15085.11ATPase family associated with various cellular activities (AAA) [more]
AT1G63160.17.2e-5138.48replication factor C 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 41..174
e-value: 6.6E-14
score: 62.2
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 241..326
e-value: 2.6E-21
score: 75.8
NoneNo IPR availableGENE3D1.20.272.10coord: 240..330
e-value: 1.1E-32
score: 114.1
NoneNo IPR availableGENE3D1.10.8.60coord: 176..239
e-value: 6.1E-16
score: 59.8
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 5..330
NoneNo IPR availablePANTHERPTHR11669:SF20REPLICATION FACTOR C SUBUNIT 4coord: 5..330
NoneNo IPR availableCDDcd18140HLD_clamp_RFCcoord: 174..233
e-value: 2.57212E-13
score: 62.1613
NoneNo IPR availableCDDcd00009AAAcoord: 26..166
e-value: 3.15946E-26
score: 99.9131
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 45..172
e-value: 9.3E-17
score: 61.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 3..173
e-value: 4.0E-55
score: 188.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..233
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 240..326

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004572.1MS004572.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003677 DNA binding