MS002494 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGGACTGTGGACATTGTCAATGAGCTAAGCAATGGACAAGAACTATTCGTGCATTGCAAGTCCAAGGACGATGATTTGGGAGAACACAACCTCGACAGTGGAGCTCAATATGGGTTTACTTTCAAAGACAATGTTTGGCAAACAACATTGTTTTGGTGTTACTTGCGAAAGCCCGACAATAGTCATGCCGCTTTTGATGTTTATTGGTATGATATTAGCAAAGGTCATTGGCTTTATACAAGATGCGACTATAAAAATTGCATTTGGATTGCTAAAGCCGACGGGATTTACATAAAAAATATCCCTTCAAATCAAGACGAGCTTGTTCACCCGTGGGAA TGGACTGTGGACATTGTCAATGAGCTAAGCAATGGACAAGAACTATTCGTGCATTGCAAGTCCAAGGACGATGATTTGGGAGAACACAACCTCGACAGTGGAGCTCAATATGGGTTTACTTTCAAAGACAATGTTTGGCAAACAACATTGTTTTGGTGTTACTTGCGAAAGCCCGACAATAGTCATGCCGCTTTTGATGTTTATTGGTATGATATTAGCAAAGGTCATTGGCTTTATACAAGATGCGACTATAAAAATTGCATTTGGATTGCTAAAGCCGACGGGATTTACATAAAAAATATCCCTTCAAATCAAGACGAGCTTGTTCACCCGTGGGAA TGGACTGTGGACATTGTCAATGAGCTAAGCAATGGACAAGAACTATTCGTGCATTGCAAGTCCAAGGACGATGATTTGGGAGAACACAACCTCGACAGTGGAGCTCAATATGGGTTTACTTTCAAAGACAATGTTTGGCAAACAACATTGTTTTGGTGTTACTTGCGAAAGCCCGACAATAGTCATGCCGCTTTTGATGTTTATTGGTATGATATTAGCAAAGGTCATTGGCTTTATACAAGATGCGACTATAAAAATTGCATTTGGATTGCTAAAGCCGACGGGATTTACATAAAAAATATCCCTTCAAATCAAGACGAGCTTGTTCACCCGTGGGAA WTVDIVNELSNGQELFVHCKSKDDDLGEHNLDSGAQYGFTFKDNVWQTTLFWCYLRKPDNSHAAFDVYWYDISKGHWLYTRCDYKNCIWIAKADGIYIKNIPSNQDELVHPWE Homology
BLAST of MS002494 vs. NCBI nr
Match: XP_022152463.1 (S-protein homolog 1-like [Momordica charantia]) HSP 1 Score: 261.2 bits (666), Expect = 4.3e-66 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of MS002494 vs. NCBI nr
Match: XP_022143694.1 (S-protein homolog 1-like [Momordica charantia]) HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48 Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 0
BLAST of MS002494 vs. NCBI nr
Match: XP_023005093.1 (S-protein homolog 1-like [Cucurbita maxima]) HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44 Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 0
BLAST of MS002494 vs. NCBI nr
Match: XP_023514776.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44 Identity = 77/113 (68.14%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of MS002494 vs. NCBI nr
Match: XP_022959591.1 (S-protein homolog 1-like [Cucurbita moschata]) HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43 Identity = 76/113 (67.26%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of MS002494 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 4.1e-27 Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 0
BLAST of MS002494 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24 Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 0
BLAST of MS002494 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14 Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of MS002494 vs. ExPASy Swiss-Prot
Match: B3H730 (S-protein homolog 18 OS=Arabidopsis thaliana OX=3702 GN=SPH18 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 8.2e-12 Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 0
BLAST of MS002494 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 4.1e-11 Identity = 38/102 (37.25%), Postives = 50/102 (49.02%), Query Frame = 0
BLAST of MS002494 vs. ExPASy TrEMBL
Match: A0A6J1DEX4 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111020182 PE=3 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 2.1e-66 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of MS002494 vs. ExPASy TrEMBL
Match: A0A6J1CQ33 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013534 PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48 Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 0
BLAST of MS002494 vs. ExPASy TrEMBL
Match: A0A6J1L199 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111498184 PE=3 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 7.6e-45 Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 0
BLAST of MS002494 vs. ExPASy TrEMBL
Match: A0A6J1H5A3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111460620 PE=3 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 6.5e-44 Identity = 76/113 (67.26%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of MS002494 vs. ExPASy TrEMBL
Match: A0A6J1CQW3 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013499 PE=3 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42 Identity = 75/112 (66.96%), Postives = 92/112 (82.14%), Query Frame = 0
BLAST of MS002494 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 ) HSP 1 Score: 122.1 bits (305), Expect = 2.9e-28 Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 0
BLAST of MS002494 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25 Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 0
BLAST of MS002494 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 82.4 bits (202), Expect = 2.5e-16 Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 0
BLAST of MS002494 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15 Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of MS002494 vs. TAIR 10
Match: AT5G04347.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15 Identity = 47/114 (41.23%), Postives = 61/114 (53.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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