MC09g0718 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0718
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionzf-RVT domain-containing protein
LocationMC09: 6733741 .. 6733914 (-)
RNA-Seq ExpressionMC09g0718
SyntenyMC09g0718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAGTATTTCCATTGGGAGCTTTGTCATGGGGGTTTCCATACGAATGGAAGAGTTCAAAGGAGAATGTCTTACTGCTATTTATCTCCCAGTTGGTGCGCATTATGTAAAAAGGATTTGGAGACCCAAAGGCATCTCTTCATTCATTGCCCGTTTGCCCACAATTTTTGGTCA

mRNA sequence

TTGAAGTATTTCCATTGGGAGCTTTGTCATGGGGGTTTCCATACGAATGGAAGAGTTCAAAGGAGAATGTCTTACTGCTATTTATCTCCCAGTTGGTGCGCATTATGTAAAAAGGATTTGGAGACCCAAAGGCATCTCTTCATTCATTGCCCGTTTGCCCACAATTTTTGGTCA

Coding sequence (CDS)

TTGAAGTATTTCCATTGGGAGCTTTGTCATGGGGGTTTCCATACGAATGGAAGAGTTCAAAGGAGAATGTCTTACTGCTATTTATCTCCCAGTTGGTGCGCATTATGTAAAAAGGATTTGGAGACCCAAAGGCATCTCTTCATTCATTGCCCGTTTGCCCACAATTTTTGGTCA

Protein sequence

LKYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS
Homology
BLAST of MC09g0718 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.02e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 289 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

BLAST of MC09g0718 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.04e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 332 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

BLAST of MC09g0718 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.10e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 787 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

BLAST of MC09g0718 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.10e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 881 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

BLAST of MC09g0718 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.11e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2    KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
            K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 989  KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

BLAST of MC09g0718 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.40e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 289 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

BLAST of MC09g0718 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.41e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 332 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

BLAST of MC09g0718 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.44e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 787 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

BLAST of MC09g0718 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.44e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 881 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

BLAST of MC09g0718 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.44e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2    KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
            K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 989  KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

BLAST of MC09g0718 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 41.6 bits (96), Expect = 2.5e-04
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0

Query: 21  RRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 59
           R +S+    PS C LC    ET++H+F  CPF+H  WS
Sbjct: 272 RFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWS 309

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK29578.17.02e-1247.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044451.17.04e-1247.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044556.17.10e-1247.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.17.10e-1247.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.17.11e-1247.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
Match NameE-valueIdentityDescription
A0A5D3E1E33.40e-1247.37LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA73.41e-1247.37LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR153.44e-1247.37LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB83.44e-1247.37LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I73.44e-1247.37LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
AT1G45063.12.5e-0444.74copper ion binding;electron carriers [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..57
e-value: 3.3E-9
score: 37.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0718.1MC09g0718.1mRNA