MC09g0718.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0718.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	zf-RVT domain-containing protein
Location	MC09: 6733741 .. 6733914 (-)
Sequence length	174
RNA-Seq Expression	MC09g0718.1
Synteny	MC09g0718.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGTATTTCCATTGGGAGCTTTGTCATGGGGGTTTCCATACGAATGGAAGAGTTCAAAGGAGAATGTCTTACTGCTATTTATCTCCCAGTTGGTGCGCATTATGTAAAAAGGATTTGGAGACCCAAAGGCATCTCTTCATTCATTGCCCGTTTGCCCACAATTTTTGGTCA

mRNA sequence

TTGAAGTATTTCCATTGGGAGCTTTGTCATGGGGGTTTCCATACGAATGGAAGAGTTCAAAGGAGAATGTCTTACTGCTATTTATCTCCCAGTTGGTGCGCATTATGTAAAAAGGATTTGGAGACCCAAAGGCATCTCTTCATTCATTGCCCGTTTGCCCACAATTTTTGGTCA

Coding sequence (CDS)

TTGAAGTATTTCCATTGGGAGCTTTGTCATGGGGGTTTCCATACGAATGGAAGAGTTCAAAGGAGAATGTCTTACTGCTATTTATCTCCCAGTTGGTGCGCATTATGTAAAAAGGATTTGGAGACCCAAAGGCATCTCTTCATTCATTGCCCGTTTGCCCACAATTTTTGGTCA

Protein sequence

LKYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS

Homology

[Close]

BLAST of MC09g0718.1 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.02e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 289 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

[Close]

BLAST of MC09g0718.1 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.04e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 332 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

[Close]

BLAST of MC09g0718.1 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.10e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 787 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

[Close]

BLAST of MC09g0718.1 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.10e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 881 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

[Close]

BLAST of MC09g0718.1 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.11e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2    KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
            K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 989  KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

[Close]

BLAST of MC09g0718.1 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.40e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 289 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

[Close]

BLAST of MC09g0718.1 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.41e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 332 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

[Close]

BLAST of MC09g0718.1 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.44e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 787 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

[Close]

BLAST of MC09g0718.1 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.44e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
           K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 881 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

[Close]

BLAST of MC09g0718.1 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.44e-12
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2    KYFHWELCHGGFHTNGRVQRRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 58
            K+F W L HG  +T  R+Q+R+    LSP+WC +C K  E   HLFIHCP++   WS
Sbjct: 989  KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

[Close]

BLAST of MC09g0718.1 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 41.6 bits (96), Expect = 2.5e-04
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0


Query: 21  RRMSYCYLSPSWCALCKKDLETQRHLFIHCPFAHNFWS 59
           R +S+    PS C LC    ET++H+F  CPF+H  WS
Sbjct: 272 RFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWS 309

The following BLAST results are available for this feature:

BLAST of MC09g0718.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g0718.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29578.1	7.02e-12	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	7.04e-12	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	7.10e-12	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	7.10e-12	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	7.11e-12	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]

BLAST of MC09g0718.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1E3	3.40e-12	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	3.41e-12	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	3.44e-12	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	3.44e-12	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	3.44e-12	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MC09g0718.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45063.1	2.5e-04	44.74	copper ion binding;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 2..57 e-value: 3.3E-9 score: 37.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC09g0718	MC09g0718	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC09g0718.1-cds	MC09g0718.1-cds-MC09:6733741..6733914	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC09g0718.1	MC09g0718.1-protein	polypeptide