Lsi10G008280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G008280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	C2H2-like zinc finger protein
Location	chr10: 11636937 .. 11637452 (+)
RNA-Seq Expression	Lsi10G008280
Synteny	Lsi10G008280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

mRNA sequence

ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

Coding sequence (CDS)

ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

Protein sequence

MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAGRGTVEDYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN

Homology

[Close]

BLAST of Lsi10G008280 vs. ExPASy Swiss-Prot
Match: O65499 (Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.8e-26
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 22  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRC 81
           +P++KRTK + +++S +     KP    K  PN   IT PC+ECG+KFWSWKALFGHMRC
Sbjct: 39  SPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRC 98

Query: 82  HPERQWRGINPPPNFLRPFAATELQ--------------QDHDIAASLIMLANASPDA 120
           HPERQWRGINPPPN+  P AA+  Q              +DH++A+ L+ML+N +P +
Sbjct: 99  HPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLMLSNGTPSS 156

[Close]

BLAST of Lsi10G008280 vs. ExPASy Swiss-Prot
Match: Q9SIJ0 (Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.6e-21
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 2   DSPLFSFNVFPSTSTTNSTSNPRRKRTKFI-----KTTTSGTGKPTKQAKKAPNNITPPC 61
           D P  S NV    +  +   NPRRKRTK        +++S   KP  Q     + I  PC
Sbjct: 12  DIPFASSNV----TLPSYNQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPDASQIARPC 71

Query: 62  SECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATEL---------QQDHDIAA 121
           +ECGK+F S KALFGHMRCHPERQWRGINPP NF R   +            +++H+IA+
Sbjct: 72  TECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIAS 131

Query: 122 SLIMLANASPDAGRGTVED---------------------YKPRPYSG-ILDLNL---PP 158
            L+M+AN         VE+                        +   G   + N+   PP
Sbjct: 132 CLLMMANGDVPTRSSEVEERFECDGCKKVFGSHQALGGHRATHKDVKGCFANKNITEDPP 191

[Close]

BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A0A0KAW8 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118360 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.2e-55
Identity = 123/179 (68.72%), Postives = 134/179 (74.86%), Query Frame = 0


Query: 1   MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECG 60
           MD PLFSFN   S++TTNS    RRK TKFIKTTT         A   P+NITPPCSECG
Sbjct: 1   MDLPLFSFNAQRSSTTTNS----RRKPTKFIKTTT------LNNASATPHNITPPCSECG 60

Query: 61  KKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAG 120
           KKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L  DH+IA SLIML+NA PD G
Sbjct: 61  KKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAAQL--DHEIATSLIMLSNAPPDPG 120

Query: 121 RGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN 172
           RGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGIVLDLRLGLN
Sbjct: 121 RGTSEGREAVVVCEHKPRAHSGLLDLNL---PPPMEEIEQESSSPYSSGIVLDLRLGLN 164

[Close]

BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6J1FVY9 (zinc finger protein ZAT3-like OS=Cucurbita moschata OX=3662 GN=LOC111448614 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 111/205 (54.15%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 1   MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP----TKQAKK--- 60
           MDSP   LF F VFP  S ++S+    N RRKRTKFIK T +    P    +K AKK   
Sbjct: 22  MDSPSHSLFPFTVFPPPSPSHSSLPPPNSRRKRTKFIKPTAAPLHSPSTPKSKHAKKPDP 81

Query: 61  -APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIA 120
            AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRGINPPPNF R   +T   +DH+IA
Sbjct: 82  TAP-KITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRR---STATDEDHEIA 141

Query: 121 ASLIMLANA-----SPDAGRGTVEDYKPRPY---------------SGILDLNLPPPPPP 172
           A LIMLAN        +A   T  D +                    G LDLNL   PPP
Sbjct: 142 ACLIMLANGPNAIDPTEAVTETDGDCRENQELTALVFEQIDDDDDDHGYLDLNL---PPP 201

[Close]

BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6J1J6W8 (zinc finger protein ZAT3-like OS=Cucurbita maxima OX=3661 GN=LOC111484009 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.8e-37
Identity = 113/222 (50.90%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTT-------SGTGKPTKQAKK 60
           MDSP   LF FNVFP  S ++S+    N RRKRTKFIK T        S +   +K AKK
Sbjct: 25  MDSPSRSLFPFNVFPPPSPSHSSLPAPNSRRKRTKFIKPTAAAAVPLHSPSTPKSKHAKK 84

Query: 61  ----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDH 120
               AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRGINPPPNF R   +T   +DH
Sbjct: 85  PDPTAP-KITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRR---STATDEDH 144

Query: 121 DIAASLIMLANASPDA----------------------------------GRGTVEDYKP 172
           +IAA LIMLAN  P+A                                   R  V++ + 
Sbjct: 145 EIAACLIMLAN-GPNAIDPTEAVTETDDDCRENQESTAAAAAALVFGQRGSRKNVKEEED 204

[Close]

BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6A3A3Z5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110597pilonHSYRG00819 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-27
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 23  PRRKRTKFIK------TTTSGTGKPTKQAKK---APNNITPPCSECGKKFWSWKALFGHM 82
           PR+KR+K IK       T+S T    K AKK   +   ITPPCSECGKKFWSWKALFGHM
Sbjct: 39  PRKKRSKLIKIGVGGFPTSSSTVSRPKYAKKPDPSAPKITPPCSECGKKFWSWKALFGHM 98

Query: 83  RCHPERQWRGINPPPNFLRPFAATE------LQQDHDIAASLIMLANASPDAGRGTVEDY 130
           RCHPERQWRGINPPPN  RP   T        + +H++AASL+MLAN++P +       Y
Sbjct: 99  RCHPERQWRGINPPPNHCRPVKPTNSTEALMTEDEHEVAASLLMLANSAPASESKCGTSY 158

[Close]

BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6A3C7Y7 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009308pilonHSYRG00009 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.4e-27
Identity = 71/133 (53.38%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 13  STSTTNSTSNPRRKRTKFIK------TTTSGTGKPTKQAKKAPNN---ITPPCSECGKKF 72
           S++  N    PR+KR+K IK      +T S T    K AKK   N   ITPPCSECGKKF
Sbjct: 29  SSNNVNCDPKPRKKRSKLIKIGVGGFSTRSETVSRPKYAKKPDPNAPKITPPCSECGKKF 88

Query: 73  WSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE------LQQDHDIAASLIMLANASP 131
           WSWKALFGHMRCHPERQWRGINPPPN   P   T        + DH+IAASL+MLA+ +P
Sbjct: 89  WSWKALFGHMRCHPERQWRGINPPPNHFWPVKPTNNVDTLMTEDDHEIAASLLMLADGAP 148

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_038880579.1 (zinc finger protein ZAT3-like [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 138/173 (79.77%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 7   SFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKK----APNNITPPCSECGKK 66
           SF+VFP T T++S+SNPRRKRTKF+KTTTS  GKPTKQ KK    A NNITPPCSECGKK
Sbjct: 4   SFSVFPPTCTSDSSSNPRRKRTKFMKTTTS--GKPTKQPKKPDSTAANNITPPCSECGKK 63

Query: 67  FWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPD-AGR 126
           FWSWKALFGHMRCHPERQWRGI PPPN LRP  A EL+QDH+IAA LIMLANA  D +GR
Sbjct: 64  FWSWKALFGHMRCHPERQWRGIKPPPNLLRPSTAAELRQDHEIAACLIMLANAPSDGSGR 123

Query: 127 GTVEDYKPR-PYSGILDLNLPPPP--PPMEEIEQESSSSYSSGIVLDLRLGLN 172
           GT EDYK R P+SGILDLNLPPPP  PPME IE+ESSSSYSSGIVLDLRLGLN
Sbjct: 124 GTAEDYKRRSPFSGILDLNLPPPPPRPPMEVIEEESSSSYSSGIVLDLRLGLN 174

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_004140060.1 (zinc finger protein ZAT3 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 8.8e-55
Identity = 123/179 (68.72%), Postives = 134/179 (74.86%), Query Frame = 0


Query: 1   MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECG 60
           MD PLFSFN   S++TTNS    RRK TKFIKTTT         A   P+NITPPCSECG
Sbjct: 1   MDLPLFSFNAQRSSTTTNS----RRKPTKFIKTTT------LNNASATPHNITPPCSECG 60

Query: 61  KKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAG 120
           KKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L  DH+IA SLIML+NA PD G
Sbjct: 61  KKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAAQL--DHEIATSLIMLSNAPPDPG 120

Query: 121 RGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN 172
           RGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGIVLDLRLGLN
Sbjct: 121 RGTSEGREAVVVCEHKPRAHSGLLDLNL---PPPMEEIEQESSSPYSSGIVLDLRLGLN 164

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: KGN46666.2 (hypothetical protein Csa_005720 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 5.0e-50
Identity = 115/172 (66.86%), Postives = 126/172 (73.26%), Query Frame = 0


Query: 1   MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECG 60
           MD PLFSFN   S++TTNS    RRK TKFIKTTT         A   P+NITPPCSECG
Sbjct: 1   MDLPLFSFNAQRSSTTTNS----RRKPTKFIKTTT------LNNASATPHNITPPCSECG 60

Query: 61  KKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAG 120
           KKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L  DH+IA SLIML+NA PD G
Sbjct: 61  KKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAAQL--DHEIATSLIMLSNAPPDPG 120

Query: 121 RGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVL 165
           RGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGI L
Sbjct: 121 RGTSEGREAVVVCEHKPRAHSGLLDLNL---PPPMEEIEQESSSPYSSGIKL 157

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_023512246.1 (zinc finger protein ZAT2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38
Identity = 114/220 (51.82%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1   MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP--------TKQAK 60
           MDSP   LF F VFP  S ++S+    N RRKRTKFI+ TT+    P        +K AK
Sbjct: 22  MDSPSRSLFPFTVFPPPSPSHSSLPAPNSRRKRTKFIRPTTAAAAPPLHSPSTPKSKHAK 81

Query: 61  K----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQD 120
           K    AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRGINPPPNF R   +T   +D
Sbjct: 82  KPDPTAP-KITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRR---STATDED 141

Query: 121 HDIAASLIMLANASPDA----------------------------GRGT---VEDYKPRP 172
           H+IAA LIMLAN  P+A                             RG     ED     
Sbjct: 142 HEIAACLIMLAN-GPNAIDPTEAVTETDGDCRENQESAAAALVFGQRGVKEEEEDDDDDD 201

[Close]

BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_022944064.1 (zinc finger protein ZAT3-like [Cucurbita moschata])

HSP 1 Score: 164.5 bits (415), Expect = 8.2e-37
Identity = 111/205 (54.15%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 1   MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP----TKQAKK--- 60
           MDSP   LF F VFP  S ++S+    N RRKRTKFIK T +    P    +K AKK   
Sbjct: 22  MDSPSHSLFPFTVFPPPSPSHSSLPPPNSRRKRTKFIKPTAAPLHSPSTPKSKHAKKPDP 81

Query: 61  -APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIA 120
            AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRGINPPPNF R   +T   +DH+IA
Sbjct: 82  TAP-KITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRR---STATDEDHEIA 141

Query: 121 ASLIMLANA-----SPDAGRGTVEDYKPRPY---------------SGILDLNLPPPPPP 172
           A LIMLAN        +A   T  D +                    G LDLNL   PPP
Sbjct: 142 ACLIMLANGPNAIDPTEAVTETDGDCRENQELTALVFEQIDDDDDDHGYLDLNL---PPP 201

[Close]

BLAST of Lsi10G008280 vs. TAIR 10
Match: AT4G35280.1 (C2H2-like zinc finger protein )

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-27
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 22  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRC 81
           +P++KRTK + +++S +     KP    K  PN   IT PC+ECG+KFWSWKALFGHMRC
Sbjct: 39  SPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRC 98

Query: 82  HPERQWRGINPPPNFLRPFAATELQ--------------QDHDIAASLIMLANASPDA 120
           HPERQWRGINPPPN+  P AA+  Q              +DH++A+ L+ML+N +P +
Sbjct: 99  HPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLMLSNGTPSS 156

[Close]

BLAST of Lsi10G008280 vs. TAIR 10
Match: AT2G17180.1 (C2H2-like zinc finger protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 2   DSPLFSFNVFPSTSTTNSTSNPRRKRTKFI-----KTTTSGTGKPTKQAKKAPNNITPPC 61
           D P  S NV    +  +   NPRRKRTK        +++S   KP  Q     + I  PC
Sbjct: 12  DIPFASSNV----TLPSYNQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPDASQIARPC 71

Query: 62  SECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATEL---------QQDHDIAA 121
           +ECGK+F S KALFGHMRCHPERQWRGINPP NF R   +            +++H+IA+
Sbjct: 72  TECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIAS 131

Query: 122 SLIMLANASPDAGRGTVED---------------------YKPRPYSG-ILDLNL---PP 158
            L+M+AN         VE+                        +   G   + N+   PP
Sbjct: 132 CLLMMANGDVPTRSSEVEERFECDGCKKVFGSHQALGGHRATHKDVKGCFANKNITEDPP 191

[Close]

BLAST of Lsi10G008280 vs. TAIR 10
Match: AT2G26940.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.7e-09
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 56  CSECGKKFWSWKALFGHMRCHPERQWRGINPPP-------NFLRPFAATELQQDHDIAAS 115
           C  CGK+F +  +LFGHMR HP+R W+GI PPP       ++L      E + D D+ + 
Sbjct: 121 CCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPPPPSEKFNLSYLDDDVDDEDEDDDDVMSR 180

Query: 116 LIMLANASPD 119
            +M+++   D
Sbjct: 181 SMMMSDVPED 190

[Close]

BLAST of Lsi10G008280 vs. TAIR 10
Match: AT4G35610.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 19  STSNPRRKRTKFIKTTTSGTG---------KPTKQAKKA--PNNITPPCSECGKKFWSWK 78
           S S  ++K    I T T   G         KP K+AK+   P    P C  CG+ F SWK
Sbjct: 92  SGSGGKKKSRPRISTQTDDEGDGLGEGEAKKPKKKAKELTHPPKGPPVCHICGRGFGSWK 151

Query: 79  ALFGHMRCHPERQWRGINPPPNF 91
           A+FGHMR H +R ++G  PPP F
Sbjct: 152 AVFGHMRAHRDRNYQGFLPPPTF 174

[Close]

BLAST of Lsi10G008280 vs. TAIR 10
Match: AT5G56200.1 (C2H2 type zinc finger transcription factor family )

HSP 1 Score: 55.1 bits (131), Expect = 6.6e-08
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 56  CSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFL 92
           C  C KKF S KAL+GHMR HP+R W+G+ PPP  L
Sbjct: 132 CCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPPPLL 167

The following BLAST results are available for this feature:

BLAST of Lsi10G008280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65499	6.8e-26	49.15	Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1	[more]
Q9SIJ0	6.6e-21	35.90	Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1	[more]

BLAST of Lsi10G008280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAW8	4.2e-55	68.72	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118360 P...	[more]
A0A6J1FVY9	4.0e-37	54.15	zinc finger protein ZAT3-like OS=Cucurbita moschata OX=3662 GN=LOC111448614 PE=4...	[more]
A0A6J1J6W8	6.8e-37	50.90	zinc finger protein ZAT3-like OS=Cucurbita maxima OX=3661 GN=LOC111484009 PE=4 S...	[more]
A0A6A3A3Z5	2.9e-27	55.74	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110597pilon...	[more]
A0A6A3C7Y7	6.4e-27	53.38	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009308pilon...	[more]

BLAST of Lsi10G008280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880579.1	1.3e-66	79.77	zinc finger protein ZAT3-like [Benincasa hispida]	[more]
XP_004140060.1	8.8e-55	68.72	zinc finger protein ZAT3 [Cucumis sativus]	[more]
KGN46666.2	5.0e-50	66.86	hypothetical protein Csa_005720 [Cucumis sativus]	[more]
XP_023512246.1	2.6e-38	51.82	zinc finger protein ZAT2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022944064.1	8.2e-37	54.15	zinc finger protein ZAT3-like [Cucurbita moschata]	[more]

BLAST of Lsi10G008280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35280.1	4.8e-27	49.15	C2H2-like zinc finger protein	[more]
AT2G17180.1	4.7e-22	35.90	C2H2-like zinc finger protein	[more]
AT2G26940.1	7.7e-09	37.14	C2H2-type zinc finger family protein	[more]
AT4G35610.1	2.3e-08	40.96	zinc finger (C2H2 type) family protein	[more]
AT5G56200.1	6.6e-08	61.11	C2H2 type zinc finger transcription factor family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 56..78 e-value: 3.6E-7 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..49
None	No IPR available	PANTHER	PTHR47591:SF1	ZINC FINGER PROTEIN ZAT2-RELATED	coord: 133..170
None	No IPR available	PANTHER	PTHR47591	ZINC FINGER PROTEIN ZAT2-RELATED	coord: 133..170
None	No IPR available	PANTHER	PTHR47591:SF1	ZINC FINGER PROTEIN ZAT2-RELATED	coord: 14..117
None	No IPR available	PANTHER	PTHR47591	ZINC FINGER PROTEIN ZAT2-RELATED	coord: 14..117
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 56..76
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 54..81 score: 9.348555
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 55..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008280.1	Lsi10G008280.1	mRNA