Lsi10G008280 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAGRGTVEDYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN Homology
BLAST of Lsi10G008280 vs. ExPASy Swiss-Prot
Match: O65499 (Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.8e-26 Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0
BLAST of Lsi10G008280 vs. ExPASy Swiss-Prot
Match: Q9SIJ0 (Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 6.6e-21 Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0
BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A0A0KAW8 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118360 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 4.2e-55 Identity = 123/179 (68.72%), Postives = 134/179 (74.86%), Query Frame = 0
BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6J1FVY9 (zinc finger protein ZAT3-like OS=Cucurbita moschata OX=3662 GN=LOC111448614 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37 Identity = 111/205 (54.15%), Postives = 123/205 (60.00%), Query Frame = 0
BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6J1J6W8 (zinc finger protein ZAT3-like OS=Cucurbita maxima OX=3661 GN=LOC111484009 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 6.8e-37 Identity = 113/222 (50.90%), Postives = 127/222 (57.21%), Query Frame = 0
BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6A3A3Z5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110597pilonHSYRG00819 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 2.9e-27 Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 0
BLAST of Lsi10G008280 vs. ExPASy TrEMBL
Match: A0A6A3C7Y7 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009308pilonHSYRG00009 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 6.4e-27 Identity = 71/133 (53.38%), Postives = 83/133 (62.41%), Query Frame = 0
BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_038880579.1 (zinc finger protein ZAT3-like [Benincasa hispida]) HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66 Identity = 138/173 (79.77%), Postives = 148/173 (85.55%), Query Frame = 0
BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_004140060.1 (zinc finger protein ZAT3 [Cucumis sativus]) HSP 1 Score: 224.2 bits (570), Expect = 8.8e-55 Identity = 123/179 (68.72%), Postives = 134/179 (74.86%), Query Frame = 0
BLAST of Lsi10G008280 vs. NCBI nr
Match: KGN46666.2 (hypothetical protein Csa_005720 [Cucumis sativus]) HSP 1 Score: 208.4 bits (529), Expect = 5.0e-50 Identity = 115/172 (66.86%), Postives = 126/172 (73.26%), Query Frame = 0
BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_023512246.1 (zinc finger protein ZAT2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38 Identity = 114/220 (51.82%), Postives = 127/220 (57.73%), Query Frame = 0
BLAST of Lsi10G008280 vs. NCBI nr
Match: XP_022944064.1 (zinc finger protein ZAT3-like [Cucurbita moschata]) HSP 1 Score: 164.5 bits (415), Expect = 8.2e-37 Identity = 111/205 (54.15%), Postives = 123/205 (60.00%), Query Frame = 0
BLAST of Lsi10G008280 vs. TAIR 10
Match: AT4G35280.1 (C2H2-like zinc finger protein ) HSP 1 Score: 118.6 bits (296), Expect = 4.8e-27 Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0
BLAST of Lsi10G008280 vs. TAIR 10
Match: AT2G17180.1 (C2H2-like zinc finger protein ) HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22 Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0
BLAST of Lsi10G008280 vs. TAIR 10
Match: AT2G26940.1 (C2H2-type zinc finger family protein ) HSP 1 Score: 58.2 bits (139), Expect = 7.7e-09 Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0
BLAST of Lsi10G008280 vs. TAIR 10
Match: AT4G35610.1 (zinc finger (C2H2 type) family protein ) HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08 Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 0
BLAST of Lsi10G008280 vs. TAIR 10
Match: AT5G56200.1 (C2H2 type zinc finger transcription factor family ) HSP 1 Score: 55.1 bits (131), Expect = 6.6e-08 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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