Lcy09g001420 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g001420
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranscription factor MYB36-like
LocationChr09: 1248417 .. 1248704 (+)
RNA-Seq ExpressionLcy09g001420
SyntenyLcy09g001420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGGCCACGGCCGCAAGCCAGCACAATGCCACTACCAACGTCACGTTTCCAGCCCACCCACCGCCGTTTTCCGCAGCTGCAAATTCGTTAATTCTCGAAGAACATAACAACACCAACTTTATATTTTCTGGTCCTTTTGATTTCAACCCACAAGATCAATTTCCCATCTTGAATCCACAAGAATTTACAACTTCCCATTTTCCAGTATTAAATTATGGGTTTTATCAGCACCCACAGGAAAATCAAATGGAAGAATTTCATGCAAGTAATATAGGACAATGA

mRNA sequence

ATGGCTGCGGCCACGGCCGCAAGCCAGCACAATGCCACTACCAACGTCACGTTTCCAGCCCACCCACCGCCGTTTTCCGCAGCTGCAAATTCGTTAATTCTCGAAGAACATAACAACACCAACTTTATATTTTCTGGTCCTTTTGATTTCAACCCACAAGATCAATTTCCCATCTTGAATCCACAAGAATTTACAACTTCCCATTTTCCAGTATTAAATTATGGGTTTTATCAGCACCCACAGGAAAATCAAATGGAAGAATTTCATGCAAGTAATATAGGACAATGA

Coding sequence (CDS)

ATGGCTGCGGCCACGGCCGCAAGCCAGCACAATGCCACTACCAACGTCACGTTTCCAGCCCACCCACCGCCGTTTTCCGCAGCTGCAAATTCGTTAATTCTCGAAGAACATAACAACACCAACTTTATATTTTCTGGTCCTTTTGATTTCAACCCACAAGATCAATTTCCCATCTTGAATCCACAAGAATTTACAACTTCCCATTTTCCAGTATTAAATTATGGGTTTTATCAGCACCCACAGGAAAATCAAATGGAAGAATTTCATGCAAGTAATATAGGACAATGA

Protein sequence

MAAATAASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFSGPFDFNPQDQFPILNPQEFTTSHFPVLNYGFYQHPQENQMEEFHASNIGQ
Homology
BLAST of Lcy09g001420 vs. ExPASy TrEMBL
Match: A0A6J1F5Y4 (transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111441129 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFS-GPFDF--NPQDQFPIL-NP 65
           AA+Q NA TN+ FPA+ PP+SAAA+ + L+E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 130 AATQQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPEDQFPMLWNP 189

Query: 66  QEFTT----SHFPV---------------LNYGFYQHPQENQME 87
           QE +T    S  P+               L+YGFYQ+P  + ME
Sbjct: 190 QELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVME 233

BLAST of Lcy09g001420 vs. ExPASy TrEMBL
Match: A0A6J1KT76 (transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111498442 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.2e-08
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFS-GPFDF--NPQDQFPIL-NP 65
           A +Q NA TN+ FPA+ PP+SAAA+ L  +E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 130 AVTQQNAITNMAFPANAPPYSAAADWLRFDEQMDGNLMFADANFDFKHDPEDQFPMLWNP 189

Query: 66  QEFTTSHF-------------------PVLNYGFYQHPQENQME 87
           QE +TS                      VL+YGFYQ+P  + ME
Sbjct: 190 QELSTSSSNSSLPVEQNQVPFGGNDGETVLSYGFYQYPYGDVME 233

BLAST of Lcy09g001420 vs. NCBI nr
Match: XP_023530624.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFSGP-FDF--NPQDQFPIL-NP 65
           AA+Q NA TN+ FPA+ PP+SAAA+ L L+E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 178 AATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPEDQFPMLWNP 237

Query: 66  QEFTT----SHFPV---------------LNYGFYQHPQENQME 87
           QE +T    S  P+               L+YGFYQ+P  + ME
Sbjct: 238 QELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVME 281

BLAST of Lcy09g001420 vs. NCBI nr
Match: XP_022933833.1 (transcription factor MYB36-like [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFS-GPFDF--NPQDQFPIL-NP 65
           AA+Q NA TN+ FPA+ PP+SAAA+ + L+E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 130 AATQQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPEDQFPMLWNP 189

Query: 66  QEFTT----SHFPV---------------LNYGFYQHPQENQME 87
           QE +T    S  P+               L+YGFYQ+P  + ME
Sbjct: 190 QELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVME 233

BLAST of Lcy09g001420 vs. NCBI nr
Match: KAG6588016.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFS-GPFDF--NPQDQFPIL-NP 65
           AA+Q NA TN+ FPA+ PP+SAAA+ + L+E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 130 AATQQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPEDQFPMLWNP 189

Query: 66  QEFTT----SHFPV---------------LNYGFYQHPQENQME 87
           QE +T    S  P+               L+YGFYQ+P  + ME
Sbjct: 190 QELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVME 233

BLAST of Lcy09g001420 vs. NCBI nr
Match: XP_023005467.1 (transcription factor RAX3-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFS-GPFDF--NPQDQFPIL-NP 65
           A +Q NA TN+ FPA+ PP+SAAA+ L  +E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 130 AVTQQNAITNMAFPANAPPYSAAADWLRFDEQMDGNLMFADANFDFKHDPEDQFPMLWNP 189

Query: 66  QEFTTSHF-------------------PVLNYGFYQHPQENQME 87
           QE +TS                      VL+YGFYQ+P  + ME
Sbjct: 190 QELSTSSSNSSLPVEQNQVPFGGNDGETVLSYGFYQYPYGDVME 233

BLAST of Lcy09g001420 vs. NCBI nr
Match: KAG7021913.1 (Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 6   AASQHNATTNVTFPAHPPPFSAAANSLILEEHNNTNFIFS-GPFDF--NPQDQFPIL-NP 65
           AA+Q NA TN+ FPA+ PP+SAAA+ + L+E  + N +F+   FDF  +P+DQFP+L NP
Sbjct: 101 AATQQNAITNMAFPANEPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPEDQFPMLWNP 160

Query: 66  QEFTTS 68
           QE +TS
Sbjct: 161 QELSTS 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F5Y42.8e-0843.27transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111441129 PE... [more]
A0A6J1KT768.2e-0842.31transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111498442 PE=4 ... [more]
Match NameE-valueIdentityDescription
XP_023530624.13.4e-0844.23transcription factor MYB36-like [Cucurbita pepo subsp. pepo][more]
XP_022933833.15.8e-0843.27transcription factor MYB36-like [Cucurbita moschata][more]
KAG6588016.15.8e-0843.27Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023005467.11.7e-0742.31transcription factor RAX3-like [Cucurbita maxima][more]
KAG7021913.13.2e-0653.03Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g001420.1Lcy09g001420.1mRNA