Lcy04g002540 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002540
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 18698573 .. 18698989 (+)
RNA-Seq ExpressionLcy04g002540
SyntenyLcy04g002540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAAAAAAGAAATTGGTCGATTAAAAATCTAGAAGGTAAAGCTATCCTTGAAGGTTTGAAGTCTTACCGAAAGATCATTGAAGTTTCTGGTAGAGGTTCTGACTTCCCTCTCATCGTCGAATCTGATGCTGCGAATTTGGTCAAGGTGATCGTTGGGCTTTCCTCGGATCGCACAGAAACGTCTTTGATCTCTAGGGAGATTGCTGAGGAGTCTGAAGATATGGCAGTCTCCTTCGTCTCCTACCCAAGAAGTAGTAACAATCTTGCTCATTCCTTAGCGCGAGCTGCTACTGTTTTTGGGAATTTTCTGTATTTTTTGAACCTCCCCTATTTTGTTTATCGTATAGAAGGGGCTTTTTTGGTTGGGGATGATAGGATCCCCGCGTGGCTGTGTAATTTGGTTGGTGGTTAG

mRNA sequence

ATGCAAGAAAAAAGAAATTGGTCGATTAAAAATCTAGAAGGTAAAGCTATCCTTGAAGGTTTGAAGTCTTACCGAAAGATCATTGAAGTTTCTGGTAGAGGTTCTGACTTCCCTCTCATCGTCGAATCTGATGCTGCGAATTTGGTCAAGGTGATCGTTGGGCTTTCCTCGGATCGCACAGAAACGTCTTTGATCTCTAGGGAGATTGCTGAGGAGTCTGAAGATATGGCAGTCTCCTTCGTCTCCTACCCAAGAAGTAGTAACAATCTTGCTCATTCCTTAGCGCGAGCTGCTACTGTTTTTGGGAATTTTCTGTATTTTTTGAACCTCCCCTATTTTGTTTATCGTATAGAAGGGGCTTTTTTGGTTGGGGATGATAGGATCCCCGCGTGGCTGTGTAATTTGGTTGGTGGTTAG

Coding sequence (CDS)

ATGCAAGAAAAAAGAAATTGGTCGATTAAAAATCTAGAAGGTAAAGCTATCCTTGAAGGTTTGAAGTCTTACCGAAAGATCATTGAAGTTTCTGGTAGAGGTTCTGACTTCCCTCTCATCGTCGAATCTGATGCTGCGAATTTGGTCAAGGTGATCGTTGGGCTTTCCTCGGATCGCACAGAAACGTCTTTGATCTCTAGGGAGATTGCTGAGGAGTCTGAAGATATGGCAGTCTCCTTCGTCTCCTACCCAAGAAGTAGTAACAATCTTGCTCATTCCTTAGCGCGAGCTGCTACTGTTTTTGGGAATTTTCTGTATTTTTTGAACCTCCCCTATTTTGTTTATCGTATAGAAGGGGCTTTTTTGGTTGGGGATGATAGGATCCCCGCGTGGCTGTGTAATTTGGTTGGTGGTTAG

Protein sequence

MQEKRNWSIKNLEGKAILEGLKSYRKIIEVSGRGSDFPLIVESDAANLVKVIVGLSSDRTETSLISREIAEESEDMAVSFVSYPRSSNNLAHSLARAATVFGNFLYFLNLPYFVYRIEGAFLVGDDRIPAWLCNLVGG
Homology
The following BLAST results are available for this feature:
BLAST of Lcy04g002540 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002540 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002540 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002540 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 8..98
e-value: 7.2E-5
score: 22.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002540.1Lcy04g002540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity