Lcy04g002540.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy04g002540.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr04: 18698573 .. 18698989 (+)
Sequence length	417
RNA-Seq Expression	Lcy04g002540.1
Synteny	Lcy04g002540.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAAAAAGAAATTGGTCGATTAAAAATCTAGAAGGTAAAGCTATCCTTGAAGGTTTGAAGTCTTACCGAAAGATCATTGAAGTTTCTGGTAGAGGTTCTGACTTCCCTCTCATCGTCGAATCTGATGCTGCGAATTTGGTCAAGGTGATCGTTGGGCTTTCCTCGGATCGCACAGAAACGTCTTTGATCTCTAGGGAGATTGCTGAGGAGTCTGAAGATATGGCAGTCTCCTTCGTCTCCTACCCAAGAAGTAGTAACAATCTTGCTCATTCCTTAGCGCGAGCTGCTACTGTTTTTGGGAATTTTCTGTATTTTTTGAACCTCCCCTATTTTGTTTATCGTATAGAAGGGGCTTTTTTGGTTGGGGATGATAGGATCCCCGCGTGGCTGTGTAATTTGGTTGGTGGTTAG

mRNA sequence

ATGCAAGAAAAAAGAAATTGGTCGATTAAAAATCTAGAAGGTAAAGCTATCCTTGAAGGTTTGAAGTCTTACCGAAAGATCATTGAAGTTTCTGGTAGAGGTTCTGACTTCCCTCTCATCGTCGAATCTGATGCTGCGAATTTGGTCAAGGTGATCGTTGGGCTTTCCTCGGATCGCACAGAAACGTCTTTGATCTCTAGGGAGATTGCTGAGGAGTCTGAAGATATGGCAGTCTCCTTCGTCTCCTACCCAAGAAGTAGTAACAATCTTGCTCATTCCTTAGCGCGAGCTGCTACTGTTTTTGGGAATTTTCTGTATTTTTTGAACCTCCCCTATTTTGTTTATCGTATAGAAGGGGCTTTTTTGGTTGGGGATGATAGGATCCCCGCGTGGCTGTGTAATTTGGTTGGTGGTTAG

Coding sequence (CDS)

ATGCAAGAAAAAAGAAATTGGTCGATTAAAAATCTAGAAGGTAAAGCTATCCTTGAAGGTTTGAAGTCTTACCGAAAGATCATTGAAGTTTCTGGTAGAGGTTCTGACTTCCCTCTCATCGTCGAATCTGATGCTGCGAATTTGGTCAAGGTGATCGTTGGGCTTTCCTCGGATCGCACAGAAACGTCTTTGATCTCTAGGGAGATTGCTGAGGAGTCTGAAGATATGGCAGTCTCCTTCGTCTCCTACCCAAGAAGTAGTAACAATCTTGCTCATTCCTTAGCGCGAGCTGCTACTGTTTTTGGGAATTTTCTGTATTTTTTGAACCTCCCCTATTTTGTTTATCGTATAGAAGGGGCTTTTTTGGTTGGGGATGATAGGATCCCCGCGTGGCTGTGTAATTTGGTTGGTGGTTAG

Protein sequence

MQEKRNWSIKNLEGKAILEGLKSYRKIIEVSGRGSDFPLIVESDAANLVKVIVGLSSDRTETSLISREIAEESEDMAVSFVSYPRSSNNLAHSLARAATVFGNFLYFLNLPYFVYRIEGAFLVGDDRIPAWLCNLVGG

Homology

The following BLAST results are available for this feature:

BLAST of Lcy04g002540.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g002540.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g002540.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g002540.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 8..98 e-value: 7.2E-5 score: 22.6

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy04g002540	Lcy04g002540	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g002540.1.exon1	Lcy04g002540.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g002540.1.cds1	Lcy04g002540.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy04g002540.1	Lcy04g002540.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity