Lcy03g004900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g004900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr03: 25206579 .. 25209344 (-)
RNA-Seq Expression	Lcy03g004900
Synteny	Lcy03g004900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCATTGGTCTCTTTGTAATAAATGTTCTTCTGCATACACTGTTGAGTTGACATTTGCTTTAAAAAAATGGTGATGGCTCTTCATAAATGCTGAAATTGTCAATGGGATTTGACATTATTCAATATCCCTTCTTCTACCATTGGAATGTTGGTTGGGTGCAATAAGTGCACCAACCAACCTTGAAGACTACTCTTCACTTTCATTCTTTATATACATGTATCATTTTTACGTTGGTTCTTCAGGCGGCCCCAACTTGTTCTTCTCTTCCTCTATATACAATTAGGTTAGTCTCTTCTCTCTCCCTCCCTTCTTCTTAACTACTTTTTTGTACGTGGTCTTTGACATAATACTAATGCGCTTCTCTCTTGCAATAGGGGCGGTCTCCTTCCGCCAGGAAACTAGTTGTTGCCTCATACTTTGCTTCTCCATCTCTTCCTAGTAAGGTTAGTGTCCTTGTTCTGTATGTACTAAAAATTTGATAATTAGGTTCTAATCTTCATCCTTTTTTGTTTTTAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGTTCGTCTTTTCTTAAAGATCAAATGATCCTTTTGTAATTTATTTATGTTGCACATTTTATTTGTTCATGTATATGGATTGAACCTTGTTTTTTTTTTATGGTTGTATTTATTTCATAGACTTTTTCATTCATATTCTATGTGGGGCATTGTATATTAAACATTTTAAACATTAAGCAAGTTGAAAGTATTATATTTTGGTTGTGCTTTTTACATATGTTTGGTGGTCAGAAGTTTTTAGTCTAAAGGTTACTTCAAAAATTTATTTATTTTTGGATATTGGTTCAAAGTTAGGTAAATTTTAACACAAATTTTATAACTTTAACAAATAACACAAATTTTAATATATGTTTGCTTATTCTGAATTTTACCACTATCTTTAACACAAATTTTAAATTTTTGTAAGGATCGTTTTAATTATTCCGTGAAAGCATAGAATTAGTCATTACCGAATGAGATTTAGGAGTTATAGATAAATATAAGATAAAAGAAAAGAGTTTGGTTTACAAATAACAATTTAGAAAAGAAATAGATATTAGAAAATAAATAAAATCTGTTTTAGAAAAAAAATAAAATCTGTTTTAGAAAAAAATAAAATCGGTTTTAGAAAAGAAATAGAGATTAATGAAGTAATATTTACGTGTCACAAACTTTTGAAAAAACCAGATTTCGAATAACATATATATATATTTTTTCAGAAAAACAGACTTTGGTAAACAAGTTCCACTAAAAAAAGTTATTTACTTACCCAGTTGATGGCAAGTCAGTTGGACACTTTTTTTTATGTTTTGGCCTAACAAAAATCTAAATCCAATTTGGTTGGGGATTTTTTTTTTTTTTGGAGTATAACATGACGAGTTATATTTTATTCTTCAAAAATGTTTCGTTATAATAAGGAAGAACTATAATAATTCGAACGAGTTTCTCAGATTATTACTCAAGGGACGAGAGAGAATTAATGAGTTATTTTATTTTAACAAAGATTATACGGATTTTTAAACACAATATTTAACACAAATTAACATAATGATTTTAACATAATGATTTTAACACAATCTTGAACACAAAATAAAAATTTGGAAAAACAATGTTTCAAATCATAATGAGTTACCATATGGCTCTTTTTGAATGTATCCTAACGCTCTTTTTGAACGTATTTTTATTTTTATGTTTTTACTATATATATTTTTATACGAAAACCCGGACCCCAAAGTTATGTTGTTTTCGTTTTTTACAAATCCTTTTCAACTTTTAATAACAAATCCATGATCGTAAGTTTCTTTTGGCCTCCTGATTTATTTATTACTTTTTTCCATTTTCCACTTTTAGTTAAACGATACCTTCGTCCATGATGACCTTTTTTTTTCCTTTGTCTCCTAGTTTAATTATGGATCCCGATGAACTGGATCCCCATGAACTAGTGGCCATATTGGCAGCCTTCACCACAGCTCAAACTCAAATTCTCCTACTATTAGATCTATATATGAACGATCGTAGGAGAATAGAACACGAATCACCCTACATCCGACACCACATTAGGCAACAAACGTGCTTGCTGTCTGTGATACAAACGGAGATTTCACATTCGTCCTACCAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGTAAATCATCATATATTTTTTTTCTTTTCACCATACAACCCTTAGGAAGATGTACTGAGCCGCTATAACATTCCACAGGATATTATTATCTGTGTGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCTAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGTTTACTTCACAATCTTATCAACAGGGAGATGGATGATCGTGAAATTCCCGACGAACTGGATGAGGTGGATTCTGCATCGGCCACAACTGATGGTGAGAATATTAATTTCATTGAGACTACAGACGAATGGAGACGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAACTAA

mRNA sequence

ATGAATGCATTGGGGCGGTCTCCTTCCGCCAGGAAACTAGTTGTTGCCTCATACTTTGCTTCTCCATCTCTTCCTAGTAAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGATATTATTATCTGTGTGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCTAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGTTTACTTCACAATCTTATCAACAGGGAGATGGATGATCGTGAAATTCCCGACGAACTGGATGAGGTGGATTCTGCATCGGCCACAACTGATGGTGAGAATATTAATTTCATTGAGACTACAGACGAATGGAGACGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAACTAA

Coding sequence (CDS)

ATGAATGCATTGGGGCGGTCTCCTTCCGCCAGGAAACTAGTTGTTGCCTCATACTTTGCTTCTCCATCTCTTCCTAGTAAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGATATTATTATCTGTGTGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCTAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGTTTACTTCACAATCTTATCAACAGGGAGATGGATGATCGTGAAATTCCCGACGAACTGGATGAGGTGGATTCTGCATCGGCCACAACTGATGGTGAGAATATTAATTTCATTGAGACTACAGACGAATGGAGACGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAACTAA

Protein sequence

MNALGRSPSARKLVVASYFASPSLPSKDLENILSSTLLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLHNLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRHN

Homology

[Close]

BLAST of Lcy03g004900 vs. ExPASy TrEMBL
Match: A0A5A7VL29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00850 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77
Identity = 137/179 (76.54%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L  WEGSAADSR+LRDA+SRPNGLKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 164 VLADWEGSAADSRILRDALSRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 223

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 224 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 283

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD+LAE+MF+EWELR+
Sbjct: 284 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRN 342

[Close]

BLAST of Lcy03g004900 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.7e-77
Identity = 140/178 (78.65%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDAISR NGLKVPKGYYYLCD GYPNAEGFLAPYRGERYHLSEWR
Sbjct: 145 VLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWR 204

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAPTT +EFFNMKHSS+RNVIERAFGLLKG WAILR KSYYPV +Q RTI ACCLLH
Sbjct: 205 GESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCWAILRGKSYYPVDVQCRTIMACCLLH 264

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELR 215
           NLINREM + EI D+LDE DS  ATT G+ IN+IE ++EW  WRD+LA  MFS+WEL+
Sbjct: 265 NLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQ 322

[Close]

BLAST of Lcy03g004900 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.9e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]

BLAST of Lcy03g004900 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.9e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]

BLAST of Lcy03g004900 vs. ExPASy TrEMBL
Match: A0A5A7TZ93 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00830 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.5e-77
Identity = 136/179 (75.98%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 202 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 261

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 262 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 321

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINR+M + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 322 NLINRDMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 380

[Close]

BLAST of Lcy03g004900 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.7e-77
Identity = 137/179 (76.54%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L  WEGSAADSR+LRDA+SRPNGLKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 164 VLADWEGSAADSRILRDALSRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 223

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 224 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 283

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD+LAE+MF+EWELR+
Sbjct: 284 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRN 342

[Close]

BLAST of Lcy03g004900 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-77
Identity = 140/178 (78.65%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDAISR NGLKVPKGYYYLCD GYPNAEGFLAPYRGERYHLSEWR
Sbjct: 145 VLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWR 204

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAPTT +EFFNMKHSS+RNVIERAFGLLKG WAILR KSYYPV +Q RTI ACCLLH
Sbjct: 205 GESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCWAILRGKSYYPVDVQCRTIMACCLLH 264

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELR 215
           NLINREM + EI D+LDE DS  ATT G+ IN+IE ++EW  WRD+LA  MFS+WEL+
Sbjct: 265 NLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQ 322

[Close]

BLAST of Lcy03g004900 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 6.0e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]

BLAST of Lcy03g004900 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 6.0e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]

BLAST of Lcy03g004900 vs. NCBI nr
Match: KAA0048364.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-76
Identity = 136/179 (75.98%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 202 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 261

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 262 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 321

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINR+M + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 322 NLINRDMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 380

[Close]

BLAST of Lcy03g004900 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-29
Identity = 71/187 (37.97%), Postives = 100/187 (53.48%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSA DSRVL DA+ +          +YL D G+ N   FLAP+RG RYHL E+ 
Sbjct: 28  VLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQEFA 87

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G    P TP E FN++H S RNVIER FG+ K R+AI ++   +  + Q   +  C  LH
Sbjct: 88  GQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALH 147

Query: 157 NLINRE--MDDREIPDEL-DEVDSASATTDGENINFIET----------TDEWRRWRDEL 211
           N + +E   D+ + PDE+ +E D  +   +  N N I+            +    WR  +
Sbjct: 148 NFLRKECRSDEADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQDRENTNMWRKSM 204

[Close]

BLAST of Lcy03g004900 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-24
Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSA+D +VL  A++R N L+VP+G YY+ D  YPN  GF+APY G         
Sbjct: 188 VLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV-------- 247

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
            + N+    KE FN +H      I R FG LK R+ IL +   YP++ Q + + A C LH
Sbjct: 248 -STNSREEAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALH 307

Query: 157 NLINREMDDREIPDELDEVDSASATTD------GENINFI--------ETTDEWRRWRDE 212
           N +  E  D  +    +E   A A  D       E +  +        E  ++  R RDE
Sbjct: 308 NYVRLEKPDDLVFRMFEEETLAEAGEDREVALEEEQVEIVGQEHGFRPEEVEDSLRLRDE 367

[Close]

BLAST of Lcy03g004900 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-13
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 14  VVASYFASPSLPSKDLENILSSTL------LRGWEGSAADSRVLRDAISRPNGLKVPKG- 73
           +VA Y  S ++  + ++++LS+ L      L+  E  + D++VL+      +    P   
Sbjct: 36  IVARYQQSLNVVKRKIDDVLSALLKFAADTLKSQE--SHDTKVLKYCARNESFSPHPSNR 95

Query: 74  YYYLCDVGYPNAEGFLAPYRGERYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGL 133
            YYL +  YP   G+L P+R   YHL ++ G G  P T +E FN KH   R+VI+R FG+
Sbjct: 96  KYYLVNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGV 155

Query: 134 LKGRWAIL 135
            K +W IL
Sbjct: 156 WKAKWRIL 160

[Close]

BLAST of Lcy03g004900 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-12
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 32  ILSSTLLRGWEGSAADSRVLRDAISRPNGLKVPKG-YYYLCDVGYPNAEGFLAPYRGE-- 91
           +L + +  G  GS  D+ VL+ A    +   +P    YYL D GYPN +G LAPYR    
Sbjct: 216 MLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRN 275

Query: 92  ---RYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGR 131
              RYH+S++   G  P    E FN  H+S R+VIER F + K +
Sbjct: 276 RVVRYHMSQFY-YGPRPRNKHELFNQCHTSLRSVIERTFRIWKNK 319

[Close]

BLAST of Lcy03g004900 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-11
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 0


Query: 10  ARKLVVASYF----------ASPSLPSKDLENI--LSSTLLRGWEGSAADSRVLRDAI-- 69
           A K+ VASYF           S S+  + + N   + + L  GW GS  D +VL  ++  
Sbjct: 298 APKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLCIGWPGSMPDDKVLEKSLLY 357

Query: 70  SRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWRGAGNAPTTPKEFFNMKHSS 129
            R N   + KG +     G+P  +  L PY  +              T  +  FN K S 
Sbjct: 358 QRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNL------------TWTQHAFNEKMSE 417

Query: 130 ARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLHNLINREMDDREIPDEL 173
            + V + AFG LKGRWA L+ ++   ++     + ACC+LHN+   EM + ++  EL
Sbjct: 418 VQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNIC--EMREEKMEPEL 460

The following BLAST results are available for this feature:

BLAST of Lcy03g004900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g004900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL29	1.3e-77	76.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DG22	1.7e-77	78.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	2.9e-77	76.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	2.9e-77	76.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZ93	6.5e-77	75.98	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy03g004900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068124.1	2.7e-77	76.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062747.1	3.5e-77	78.65	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0035620.1	6.0e-77	76.54	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	6.0e-77	76.54	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0048364.1	1.3e-76	75.98	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy03g004900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35695.1	2.2e-29	37.97	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G41980.1	3.7e-24	34.39	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT4G10890.1	5.0e-13	34.38	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439...	[more]
AT1G43722.1	7.2e-12	39.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G12010.1	1.6e-11	29.94	unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 39..157 e-value: 9.2E-17 score: 61.1
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 38..212
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 38..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g004900.1	Lcy03g004900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding