Lcy03g004900.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy03g004900.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr03: 25206579 .. 25209344 (-)
Sequence length651
RNA-Seq ExpressionLcy03g004900.1
SyntenyLcy03g004900.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCATTGGTCTCTTTGTAATAAATGTTCTTCTGCATACACTGTTGAGTTGACATTTGCTTTAAAAAAATGGTGATGGCTCTTCATAAATGCTGAAATTGTCAATGGGATTTGACATTATTCAATATCCCTTCTTCTACCATTGGAATGTTGGTTGGGTGCAATAAGTGCACCAACCAACCTTGAAGACTACTCTTCACTTTCATTCTTTATATACATGTATCATTTTTACGTTGGTTCTTCAGGCGGCCCCAACTTGTTCTTCTCTTCCTCTATATACAATTAGGTTAGTCTCTTCTCTCTCCCTCCCTTCTTCTTAACTACTTTTTTGTACGTGGTCTTTGACATAATACTAATGCGCTTCTCTCTTGCAATAGGGGCGGTCTCCTTCCGCCAGGAAACTAGTTGTTGCCTCATACTTTGCTTCTCCATCTCTTCCTAGTAAGGTTAGTGTCCTTGTTCTGTATGTACTAAAAATTTGATAATTAGGTTCTAATCTTCATCCTTTTTTGTTTTTAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGTTCGTCTTTTCTTAAAGATCAAATGATCCTTTTGTAATTTATTTATGTTGCACATTTTATTTGTTCATGTATATGGATTGAACCTTGTTTTTTTTTTATGGTTGTATTTATTTCATAGACTTTTTCATTCATATTCTATGTGGGGCATTGTATATTAAACATTTTAAACATTAAGCAAGTTGAAAGTATTATATTTTGGTTGTGCTTTTTACATATGTTTGGTGGTCAGAAGTTTTTAGTCTAAAGGTTACTTCAAAAATTTATTTATTTTTGGATATTGGTTCAAAGTTAGGTAAATTTTAACACAAATTTTATAACTTTAACAAATAACACAAATTTTAATATATGTTTGCTTATTCTGAATTTTACCACTATCTTTAACACAAATTTTAAATTTTTGTAAGGATCGTTTTAATTATTCCGTGAAAGCATAGAATTAGTCATTACCGAATGAGATTTAGGAGTTATAGATAAATATAAGATAAAAGAAAAGAGTTTGGTTTACAAATAACAATTTAGAAAAGAAATAGATATTAGAAAATAAATAAAATCTGTTTTAGAAAAAAAATAAAATCTGTTTTAGAAAAAAATAAAATCGGTTTTAGAAAAGAAATAGAGATTAATGAAGTAATATTTACGTGTCACAAACTTTTGAAAAAACCAGATTTCGAATAACATATATATATATTTTTTCAGAAAAACAGACTTTGGTAAACAAGTTCCACTAAAAAAAGTTATTTACTTACCCAGTTGATGGCAAGTCAGTTGGACACTTTTTTTTATGTTTTGGCCTAACAAAAATCTAAATCCAATTTGGTTGGGGATTTTTTTTTTTTTTGGAGTATAACATGACGAGTTATATTTTATTCTTCAAAAATGTTTCGTTATAATAAGGAAGAACTATAATAATTCGAACGAGTTTCTCAGATTATTACTCAAGGGACGAGAGAGAATTAATGAGTTATTTTATTTTAACAAAGATTATACGGATTTTTAAACACAATATTTAACACAAATTAACATAATGATTTTAACATAATGATTTTAACACAATCTTGAACACAAAATAAAAATTTGGAAAAACAATGTTTCAAATCATAATGAGTTACCATATGGCTCTTTTTGAATGTATCCTAACGCTCTTTTTGAACGTATTTTTATTTTTATGTTTTTACTATATATATTTTTATACGAAAACCCGGACCCCAAAGTTATGTTGTTTTCGTTTTTTACAAATCCTTTTCAACTTTTAATAACAAATCCATGATCGTAAGTTTCTTTTGGCCTCCTGATTTATTTATTACTTTTTTCCATTTTCCACTTTTAGTTAAACGATACCTTCGTCCATGATGACCTTTTTTTTTCCTTTGTCTCCTAGTTTAATTATGGATCCCGATGAACTGGATCCCCATGAACTAGTGGCCATATTGGCAGCCTTCACCACAGCTCAAACTCAAATTCTCCTACTATTAGATCTATATATGAACGATCGTAGGAGAATAGAACACGAATCACCCTACATCCGACACCACATTAGGCAACAAACGTGCTTGCTGTCTGTGATACAAACGGAGATTTCACATTCGTCCTACCAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGTAAATCATCATATATTTTTTTTCTTTTCACCATACAACCCTTAGGAAGATGTACTGAGCCGCTATAACATTCCACAGGATATTATTATCTGTGTGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCTAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGTTTACTTCACAATCTTATCAACAGGGAGATGGATGATCGTGAAATTCCCGACGAACTGGATGAGGTGGATTCTGCATCGGCCACAACTGATGGTGAGAATATTAATTTCATTGAGACTACAGACGAATGGAGACGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAACTAA

mRNA sequence

ATGAATGCATTGGGGCGGTCTCCTTCCGCCAGGAAACTAGTTGTTGCCTCATACTTTGCTTCTCCATCTCTTCCTAGTAAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGATATTATTATCTGTGTGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCTAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGTTTACTTCACAATCTTATCAACAGGGAGATGGATGATCGTGAAATTCCCGACGAACTGGATGAGGTGGATTCTGCATCGGCCACAACTGATGGTGAGAATATTAATTTCATTGAGACTACAGACGAATGGAGACGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAACTAA

Coding sequence (CDS)

ATGAATGCATTGGGGCGGTCTCCTTCCGCCAGGAAACTAGTTGTTGCCTCATACTTTGCTTCTCCATCTCTTCCTAGTAAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGATATTATTATCTGTGTGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCTAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGTTTACTTCACAATCTTATCAACAGGGAGATGGATGATCGTGAAATTCCCGACGAACTGGATGAGGTGGATTCTGCATCGGCCACAACTGATGGTGAGAATATTAATTTCATTGAGACTACAGACGAATGGAGACGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAACTAA

Protein sequence

MNALGRSPSARKLVVASYFASPSLPSKDLENILSSTLLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLHNLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRHN
Homology
[Close]
BLAST of Lcy03g004900.1 vs. ExPASy TrEMBL
Match: A0A5A7VL29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00850 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77
Identity = 137/179 (76.54%), Postives = 158/179 (88.27%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L  WEGSAADSR+LRDA+SRPNGLKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 164 VLADWEGSAADSRILRDALSRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 223

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 224 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 283

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD+LAE+MF+EWELR+
Sbjct: 284 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRN 342

[Close]
BLAST of Lcy03g004900.1 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.7e-77
Identity = 140/178 (78.65%), Postives = 154/178 (86.52%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDAISR NGLKVPKGYYYLCD GYPNAEGFLAPYRGERYHLSEWR
Sbjct: 145 VLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWR 204

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAPTT +EFFNMKHSS+RNVIERAFGLLKG WAILR KSYYPV +Q RTI ACCLLH
Sbjct: 205 GESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCWAILRGKSYYPVDVQCRTIMACCLLH 264

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELR 215
           NLINREM + EI D+LDE DS  ATT G+ IN+IE ++EW  WRD+LA  MFS+WEL+
Sbjct: 265 NLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQ 322

[Close]
BLAST of Lcy03g004900.1 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.9e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]
BLAST of Lcy03g004900.1 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.9e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]
BLAST of Lcy03g004900.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ93 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00830 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.5e-77
Identity = 136/179 (75.98%), Postives = 157/179 (87.71%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 202 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 261

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 262 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 321

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINR+M + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 322 NLINRDMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 380

[Close]
BLAST of Lcy03g004900.1 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.7e-77
Identity = 137/179 (76.54%), Postives = 158/179 (88.27%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L  WEGSAADSR+LRDA+SRPNGLKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 164 VLADWEGSAADSRILRDALSRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 223

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 224 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 283

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD+LAE+MF+EWELR+
Sbjct: 284 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRN 342

[Close]
BLAST of Lcy03g004900.1 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-77
Identity = 140/178 (78.65%), Postives = 154/178 (86.52%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDAISR NGLKVPKGYYYLCD GYPNAEGFLAPYRGERYHLSEWR
Sbjct: 145 VLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWR 204

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAPTT +EFFNMKHSS+RNVIERAFGLLKG WAILR KSYYPV +Q RTI ACCLLH
Sbjct: 205 GESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCWAILRGKSYYPVDVQCRTIMACCLLH 264

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELR 215
           NLINREM + EI D+LDE DS  ATT G+ IN+IE ++EW  WRD+LA  MFS+WEL+
Sbjct: 265 NLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQ 322

[Close]
BLAST of Lcy03g004900.1 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 6.0e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]
BLAST of Lcy03g004900.1 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 6.0e-77
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 269 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINREM + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 387

[Close]
BLAST of Lcy03g004900.1 vs. NCBI nr
Match: KAA0048364.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-76
Identity = 136/179 (75.98%), Postives = 157/179 (87.71%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSAADSR+LRDA+SRPN LKVPKGYYYL D GYPNAEGFLAPYRG+RYHL EWR
Sbjct: 202 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 261

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G  NAP+T KEFFNMKHSSARNVIERAFG+LKGRWAILR KSYYPV +Q RTI ACCLLH
Sbjct: 262 GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 321

Query: 157 NLINREMDDREIPDELDEVDSASATTDGENINFIETTDEWRRWRDELAEQMFSEWELRH 216
           NLINR+M + +I D +DEVDS  ATT  ++I++IET++EW +WRD LAE+MF+EWELR+
Sbjct: 322 NLINRDMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFTEWELRN 380

[Close]
BLAST of Lcy03g004900.1 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-29
Identity = 71/187 (37.97%), Postives = 100/187 (53.48%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSA DSRVL DA+ +          +YL D G+ N   FLAP+RG RYHL E+ 
Sbjct: 28  VLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQEFA 87

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
           G    P TP E FN++H S RNVIER FG+ K R+AI ++   +  + Q   +  C  LH
Sbjct: 88  GQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALH 147

Query: 157 NLINRE--MDDREIPDEL-DEVDSASATTDGENINFIET----------TDEWRRWRDEL 211
           N + +E   D+ + PDE+ +E D  +   +  N N I+            +    WR  +
Sbjct: 148 NFLRKECRSDEADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQDRENTNMWRKSM 204

[Close]
BLAST of Lcy03g004900.1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-24
Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 0 

Query: 37  LLRGWEGSAADSRVLRDAISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWR 96
           +L GWEGSA+D +VL  A++R N L+VP+G YY+ D  YPN  GF+APY G         
Sbjct: 188 VLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV-------- 247

Query: 97  GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLH 156
            + N+    KE FN +H      I R FG LK R+ IL +   YP++ Q + + A C LH
Sbjct: 248 -STNSREEAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALH 307

Query: 157 NLINREMDDREIPDELDEVDSASATTD------GENINFI--------ETTDEWRRWRDE 212
           N +  E  D  +    +E   A A  D       E +  +        E  ++  R RDE
Sbjct: 308 NYVRLEKPDDLVFRMFEEETLAEAGEDREVALEEEQVEIVGQEHGFRPEEVEDSLRLRDE 367

[Close]
BLAST of Lcy03g004900.1 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-13
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 0 

Query: 14  VVASYFASPSLPSKDLENILSSTL------LRGWEGSAADSRVLRDAISRPNGLKVPKG- 73
           +VA Y  S ++  + ++++LS+ L      L+  E  + D++VL+      +    P   
Sbjct: 36  IVARYQQSLNVVKRKIDDVLSALLKFAADTLKSQE--SHDTKVLKYCARNESFSPHPSNR 95

Query: 74  YYYLCDVGYPNAEGFLAPYRGERYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGL 133
            YYL +  YP   G+L P+R   YHL ++ G G  P T +E FN KH   R+VI+R FG+
Sbjct: 96  KYYLVNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGV 155

Query: 134 LKGRWAIL 135
            K +W IL
Sbjct: 156 WKAKWRIL 160

[Close]
BLAST of Lcy03g004900.1 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-12
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 32  ILSSTLLRGWEGSAADSRVLRDAISRPNGLKVPKG-YYYLCDVGYPNAEGFLAPYRGE-- 91
           +L + +  G  GS  D+ VL+ A    +   +P    YYL D GYPN +G LAPYR    
Sbjct: 216 MLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRN 275

Query: 92  ---RYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGR 131
              RYH+S++   G  P    E FN  H+S R+VIER F + K +
Sbjct: 276 RVVRYHMSQFY-YGPRPRNKHELFNQCHTSLRSVIERTFRIWKNK 319

[Close]
BLAST of Lcy03g004900.1 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-11
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 0 

Query: 10  ARKLVVASYF----------ASPSLPSKDLENI--LSSTLLRGWEGSAADSRVLRDAI-- 69
           A K+ VASYF           S S+  + + N   + + L  GW GS  D +VL  ++  
Sbjct: 298 APKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLCIGWPGSMPDDKVLEKSLLY 357

Query: 70  SRPNGLKVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWRGAGNAPTTPKEFFNMKHSS 129
            R N   + KG +     G+P  +  L PY  +              T  +  FN K S 
Sbjct: 358 QRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNL------------TWTQHAFNEKMSE 417

Query: 130 ARNVIERAFGLLKGRWAILRAKSYYPVRIQGRTIAACCLLHNLINREMDDREIPDEL 173
            + V + AFG LKGRWA L+ ++   ++     + ACC+LHN+   EM + ++  EL
Sbjct: 418 VQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNIC--EMREEKMEPEL 460

The following BLAST results are available for this feature:
BLAST of Lcy03g004900.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g004900.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VL291.3e-7776.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DG221.7e-7778.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXW12.9e-7776.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDX02.9e-7776.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZ936.5e-7775.98Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Lcy03g004900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0068124.12.7e-7776.54retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062747.13.5e-7778.65retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
KAA0035620.16.0e-7776.54retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon... [more]
KAA0046727.16.0e-7776.54retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon... [more]
KAA0048364.11.3e-7675.98retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lcy03g004900.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G35695.12.2e-2937.97CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G41980.13.7e-2434.39CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT4G10890.15.0e-1334.38unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439... [more]
AT1G43722.17.2e-1239.05unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G12010.11.6e-1129.94unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 39..157
e-value: 9.2E-17
score: 61.1
NoneNo IPR availablePANTHERPTHR22930:SF211NUCLEASE HARBI1-RELATEDcoord: 38..212
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 38..212

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy03g004900Lcy03g004900gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy03g004900.1.exon5Lcy03g004900.1.exon5exon
Lcy03g004900.1.exon4Lcy03g004900.1.exon4exon
Lcy03g004900.1.exon3Lcy03g004900.1.exon3exon
Lcy03g004900.1.exon2Lcy03g004900.1.exon2exon
Lcy03g004900.1.exon1Lcy03g004900.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy03g004900.1.cds5Lcy03g004900.1.cds5CDS
Lcy03g004900.1.cds4Lcy03g004900.1.cds4CDS
Lcy03g004900.1.cds3Lcy03g004900.1.cds3CDS
Lcy03g004900.1.cds2Lcy03g004900.1.cds2CDS
Lcy03g004900.1.cds1Lcy03g004900.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy03g004900.1Lcy03g004900.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding