Lag0039274 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039274
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Locationchr2: 40322090 .. 40322560 (+)
RNA-Seq ExpressionLag0039274
SyntenyLag0039274
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTAGGTCCACGATTAGAGGGTTCTTGAACTCTATTCGTCCGATTTTGGTTGTAGATGAGACCCACATAAGGGGAAAGTTCGGTGGAAAGCTCCTAACTGCAGTAGGCATCGATGGAAACAACCAAATATACCTCGTAGGGTTTGGCATTGGGAGGGGGGAAACCGTCGAATCGTGGACCTACTTTTTTCGAAAAATCGATCGTGCTATTGGTCAACTTAATCCCCTTGTGATTGTATCTGACAGACACAAGAGCATATTGAAGGCAGCACAGACTGTGATTCCTGATGCAGCCCACGTTTACTGTATCCACCATCTACAAGAAAACTTGAAAACAAAGTTCAAGGATCACGACTTTATTCCACTCTACCTTAAAGCAACGAAGGCATTTCGTGATACAGAGTTTCAGGAATTTTGGAGCCAAATTCCAATGTGTCCAAAAATACTTGGAAGAAGTCGGACTTGA

mRNA sequence

ATGGAAATTAGGTCCACGATTAGAGGGTTCTTGAACTCTATTCGTCCGATTTTGGTTGTAGATGAGACCCACATAAGGGGAAAGTTCGGTGGAAAGCTCCTAACTGCAGTAGGCATCGATGGAAACAACCAAATATACCTCGTAGGGTTTGGCATTGGGAGGGGGGAAACCGTCGAATCGTGGACCTACTTTTTTCGAAAAATCGATCGTGCTATTGGTCAACTTAATCCCCTTGTGATTGTATCTGACAGACACAAGAGCATATTGAAGGCAGCACAGACTGTGATTCCTGATGCAGCCCACGTTTACTGTATCCACCATCTACAAGAAAACTTGAAAACAAAGTTCAAGGATCACGACTTTATTCCACTCTACCTTAAAGCAACGAAGGCATTTCGTGATACAGAGTTTCAGGAATTTTGGAGCCAAATTCCAATGTGTCCAAAAATACTTGGAAGAAGTCGGACTTGA

Coding sequence (CDS)

ATGGAAATTAGGTCCACGATTAGAGGGTTCTTGAACTCTATTCGTCCGATTTTGGTTGTAGATGAGACCCACATAAGGGGAAAGTTCGGTGGAAAGCTCCTAACTGCAGTAGGCATCGATGGAAACAACCAAATATACCTCGTAGGGTTTGGCATTGGGAGGGGGGAAACCGTCGAATCGTGGACCTACTTTTTTCGAAAAATCGATCGTGCTATTGGTCAACTTAATCCCCTTGTGATTGTATCTGACAGACACAAGAGCATATTGAAGGCAGCACAGACTGTGATTCCTGATGCAGCCCACGTTTACTGTATCCACCATCTACAAGAAAACTTGAAAACAAAGTTCAAGGATCACGACTTTATTCCACTCTACCTTAAAGCAACGAAGGCATTTCGTGATACAGAGTTTCAGGAATTTTGGAGCCAAATTCCAATGTGTCCAAAAATACTTGGAAGAAGTCGGACTTGA

Protein sequence

MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFIPLYLKATKAFRDTEFQEFWSQIPMCPKILGRSRT
Homology
BLAST of Lag0039274 vs. NCBI nr
Match: XP_038885923.1 (uncharacterized protein LOC120076231 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-36
Identity = 79/148 (53.38%), Postives = 101/148 (68.24%), Query Frame = 0

Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M   +TIRGFLN IRP+L+VD TH+R K+ GKLL A  +DGNNQIY V F I  GET ES
Sbjct: 1   MAFGATIRGFLNCIRPVLIVDVTHLRDKYSGKLLLATRVDGNNQIYQVAFDISSGETDES 60

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           W +F +++  AIGQ++ LVIVSDRH SI KA  TV P+A +  CIHHL+ NL   FK+ D
Sbjct: 61  WVWFLQQLRCAIGQVHDLVIVSDRHPSIKKAIITVFPEAFYGICIHHLKANLLVNFKNKD 120

Query: 121 FIPLYLKATKAFRDTEFQEFWSQIPMCP 149
              ++ K+ KA R++ F+  WSQ    P
Sbjct: 121 IFDIFDKSAKASRESVFKYHWSQFAGYP 148

BLAST of Lag0039274 vs. NCBI nr
Match: XP_038882416.1 (protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-35
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = 0

Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M + ++IRGFLN IRPIL+V  TH+RGK+ GKLL A G+DGNNQIY V FGI  GET ES
Sbjct: 177 MALNASIRGFLNCIRPILIVGGTHLRGKYSGKLLLATGVDGNNQIYPVTFGISSGETNES 236

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           W +F +++  AIGQ++ +VIVSDRH SI K   TV P+A H  CIHHL+ NL   FK+ D
Sbjct: 237 WVWFLQQLICAIGQVHDVVIVSDRHPSIKKVIITVFPEAFHGICIHHLKANLLVNFKNKD 296

Query: 121 FIPLYLKATKAFRDTEFQ 139
            + ++ KA KA R+  F+
Sbjct: 297 ILDIFDKAAKASREFVFK 314

BLAST of Lag0039274 vs. NCBI nr
Match: XP_022147769.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-33
Identity = 71/150 (47.33%), Postives = 100/150 (66.67%), Query Frame = 0

Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M +  +IRGF + IRPILVVD  H++GK+ G LLTA  IDGNNQIY + FG+   E  +S
Sbjct: 67  MALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYPLAFGVVDKECDDS 126

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           WT+F  ++   IG +N LV VSDRH+SI  +  TV P+AAHV C+HHL   L  KF++  
Sbjct: 127 WTWFIERVKICIGDINGLVFVSDRHQSITNSVATVFPNAAHVTCMHHLTMKLNEKFRNEG 186

Query: 121 FIPLYLKATKAFRDTEFQEFWSQIPMCPKI 151
              ++ KA KAF+ ++F+ +W Q+   P++
Sbjct: 187 MQIIFAKAAKAFKVSKFRYYWGQLAGFPRV 216

BLAST of Lag0039274 vs. NCBI nr
Match: XP_022157237.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 0

Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M +  +IRGF + IRPILVVD  H++GK+ G LLTA  IDGNNQIY + FG+      +S
Sbjct: 193 MALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYHLAFGVVDKARDDS 252

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           WT+F  ++   IG +N LV +SDRH+SI  +  TV PDAAHV C+HHL   L  KF++  
Sbjct: 253 WTWFIERVKICIGDINGLVFISDRHQSITNSVATVFPDAAHVTCMHHLAMKLNEKFRNEG 312

Query: 121 FIPLYLKATKAFRDTEFQEFWSQIPMCPKI 151
              ++ KA KAF+ ++F+ +W Q+   P +
Sbjct: 313 MQIIFAKAAKAFKISKFRYYWGQLAGFPGV 342

BLAST of Lag0039274 vs. NCBI nr
Match: XP_022156566.1 (uncharacterized protein LOC111023441 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-31
Identity = 70/148 (47.30%), Postives = 97/148 (65.54%), Query Frame = 0

Query: 3   IRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVESWT 62
           I  +IRGF + IRPILVVD  H++GK+ G LLTA  IDGNNQIY + F +   E+ +SWT
Sbjct: 16  IGCSIRGFGSCIRPILVVDGAHLKGKYRGVLLTASSIDGNNQIYPLAFSVVDKESDDSWT 75

Query: 63  YFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFI 122
           +F  ++   IG +N LV VSDRH+SI  +  TV PDAA+V C+HHL   L  KF++    
Sbjct: 76  WFIERVKICIGDINGLVFVSDRHQSITNSVATVFPDAAYVTCMHHLAMKLNEKFRNEGMQ 135

Query: 123 PLYLKATKAFRDTEFQEFWSQIPMCPKI 151
             + KA K F+ ++F+ +W Q+   PK+
Sbjct: 136 ITFSKAAKTFKVSKFRYYWGQLAGFPKV 163

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 34/137 (24.82%), Postives = 71/137 (51.82%), Query Frame = 0

Query: 13  SIRPILVVDETHIRGKFGGKLLTA--VGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDR 72
           S   ++  D T++  KF  KL  A  +G++ ++Q  L+G  +   E++E++ +  +   R
Sbjct: 271 SFNDVVSFDTTYV--KFNDKLPLALFIGVNHHSQPMLLGCALVADESMETFVWLIKTWLR 330

Query: 73  AIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKF-----KDHDFIPLY 132
           A+G   P VI++D+ K ++ A   ++P+  H + + H+ E +   F     +  +F+  +
Sbjct: 331 AMGGRAPKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEYFSHVMKRHENFLLKF 390

Query: 133 LKAT-KAFRDTEFQEFW 142
            K   +++ D EF   W
Sbjct: 391 NKCIFRSWTDDEFDMRW 405

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: Q6NQJ7 (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 30/138 (21.74%), Postives = 69/138 (50.00%), Query Frame = 0

Query: 13  SIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDRAI 72
           S   ++  + ++   K+   L+  VG++ + Q  L+G G+   +TV ++ +  +    A+
Sbjct: 208 SFSDVVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSWLVAM 267

Query: 73  GQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLK------TKFKDHDFIPLYL 132
           G   P V+++D++ +I  A   V+P+  H YC+ H+ + L       + ++D     L+ 
Sbjct: 268 GGQKPKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVLDQLPRNLDYWSMWQDTFMKKLFK 327

Query: 133 KATKAFRDTEFQEFWSQI 145
              +++ + EF   W ++
Sbjct: 328 CIYRSWSEEEFDRRWLKL 345

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: P59787 (Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0125 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.9e-05
Identity = 32/124 (25.81%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 16  PILVVDETHIRGKFGGKLLT-----AVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDR 75
           P L+ D  +I+ +   ++L+     A+GI  +    ++GF I  GE+ E+WT FF  + +
Sbjct: 162 PYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYL-K 221

Query: 76  AIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFIPLYLKATK 135
             G     +++SD HK ++ A +    + +   C  H   N+        F  +  K +K
Sbjct: 222 ERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNI--------FTTIPKKNSK 276

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: P19775 (Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Staphylococcus aureus OX=1280 GN=tnp PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.9e-05
Identity = 32/124 (25.81%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 16  PILVVDETHIRGKFGGKLLT-----AVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDR 75
           P L+ D  +I+ +   ++L+     A+GI  +    ++GF I  GE+ E+WT FF  + +
Sbjct: 162 PYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYL-K 221

Query: 76  AIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFIPLYLKATK 135
             G     +++SD HK ++ A +    + +   C  H   N+        F  +  K +K
Sbjct: 222 ERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNI--------FTTIPKKNSK 276

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 30/139 (21.58%), Postives = 63/139 (45.32%), Query Frame = 0

Query: 13  SIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES-WTYFFRKIDRA 72
           S   +++ D  ++R  +       +G+  + Q  L+G  +  GE  ES +++ FR   +A
Sbjct: 215 SFSDVVLFDTFYVRNGYRIPFAPFIGVSHHRQYVLLGCAL-IGEVSESTYSWLFRTWLKA 274

Query: 73  IGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKF-----KDHDFIPLYL 132
           +G   P V+++D+ K +      V PD  H++C+  +   +         +D  F+  + 
Sbjct: 275 VGGQAPGVMITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKISEMLNPFVSQDDGFMESFG 334

Query: 133 K-ATKAFRDTEFQEFWSQI 145
                ++ D  F+  WS +
Sbjct: 335 NCVASSWTDEHFERRWSNM 352

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885923.13.7e-3653.38uncharacterized protein LOC120076231 [Benincasa hispida][more]
XP_038882416.12.4e-3555.80protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida][more]
XP_022147769.15.0e-3347.33protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia][more]
XP_022157237.12.5e-3246.67protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia][more]
XP_022156566.11.2e-3147.30uncharacterized protein LOC111023441 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q9SWG31.1e-0624.82Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1... [more]
Q6NQJ73.2e-0621.74Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=... [more]
P597877.9e-0525.81Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Enteroc... [more]
P197757.9e-0525.81Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Staphyl... [more]
Q3EBQ33.9e-0421.58Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018289MULE transposase domainPFAMPF10551MULEcoord: 17..111
e-value: 1.8E-21
score: 76.4
NoneNo IPR availablePANTHERPTHR31973POLYPROTEIN, PUTATIVE-RELATEDcoord: 7..144
NoneNo IPR availablePANTHERPTHR31973:SF106OS09G0268600 PROTEINcoord: 7..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039274.1Lag0039274.1mRNA