Lag0039274 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039274
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	chr2: 40322090 .. 40322560 (+)
RNA-Seq Expression	Lag0039274
Synteny	Lag0039274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAGGTCCACGATTAGAGGGTTCTTGAACTCTATTCGTCCGATTTTGGTTGTAGATGAGACCCACATAAGGGGAAAGTTCGGTGGAAAGCTCCTAACTGCAGTAGGCATCGATGGAAACAACCAAATATACCTCGTAGGGTTTGGCATTGGGAGGGGGGAAACCGTCGAATCGTGGACCTACTTTTTTCGAAAAATCGATCGTGCTATTGGTCAACTTAATCCCCTTGTGATTGTATCTGACAGACACAAGAGCATATTGAAGGCAGCACAGACTGTGATTCCTGATGCAGCCCACGTTTACTGTATCCACCATCTACAAGAAAACTTGAAAACAAAGTTCAAGGATCACGACTTTATTCCACTCTACCTTAAAGCAACGAAGGCATTTCGTGATACAGAGTTTCAGGAATTTTGGAGCCAAATTCCAATGTGTCCAAAAATACTTGGAAGAAGTCGGACTTGA

mRNA sequence

ATGGAAATTAGGTCCACGATTAGAGGGTTCTTGAACTCTATTCGTCCGATTTTGGTTGTAGATGAGACCCACATAAGGGGAAAGTTCGGTGGAAAGCTCCTAACTGCAGTAGGCATCGATGGAAACAACCAAATATACCTCGTAGGGTTTGGCATTGGGAGGGGGGAAACCGTCGAATCGTGGACCTACTTTTTTCGAAAAATCGATCGTGCTATTGGTCAACTTAATCCCCTTGTGATTGTATCTGACAGACACAAGAGCATATTGAAGGCAGCACAGACTGTGATTCCTGATGCAGCCCACGTTTACTGTATCCACCATCTACAAGAAAACTTGAAAACAAAGTTCAAGGATCACGACTTTATTCCACTCTACCTTAAAGCAACGAAGGCATTTCGTGATACAGAGTTTCAGGAATTTTGGAGCCAAATTCCAATGTGTCCAAAAATACTTGGAAGAAGTCGGACTTGA

Coding sequence (CDS)

ATGGAAATTAGGTCCACGATTAGAGGGTTCTTGAACTCTATTCGTCCGATTTTGGTTGTAGATGAGACCCACATAAGGGGAAAGTTCGGTGGAAAGCTCCTAACTGCAGTAGGCATCGATGGAAACAACCAAATATACCTCGTAGGGTTTGGCATTGGGAGGGGGGAAACCGTCGAATCGTGGACCTACTTTTTTCGAAAAATCGATCGTGCTATTGGTCAACTTAATCCCCTTGTGATTGTATCTGACAGACACAAGAGCATATTGAAGGCAGCACAGACTGTGATTCCTGATGCAGCCCACGTTTACTGTATCCACCATCTACAAGAAAACTTGAAAACAAAGTTCAAGGATCACGACTTTATTCCACTCTACCTTAAAGCAACGAAGGCATTTCGTGATACAGAGTTTCAGGAATTTTGGAGCCAAATTCCAATGTGTCCAAAAATACTTGGAAGAAGTCGGACTTGA

Protein sequence

MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFIPLYLKATKAFRDTEFQEFWSQIPMCPKILGRSRT

Homology

[Close]

BLAST of Lag0039274 vs. NCBI nr
Match: XP_038885923.1 (uncharacterized protein LOC120076231 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-36
Identity = 79/148 (53.38%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M   +TIRGFLN IRP+L+VD TH+R K+ GKLL A  +DGNNQIY V F I  GET ES
Sbjct: 1   MAFGATIRGFLNCIRPVLIVDVTHLRDKYSGKLLLATRVDGNNQIYQVAFDISSGETDES 60

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           W +F +++  AIGQ++ LVIVSDRH SI KA  TV P+A +  CIHHL+ NL   FK+ D
Sbjct: 61  WVWFLQQLRCAIGQVHDLVIVSDRHPSIKKAIITVFPEAFYGICIHHLKANLLVNFKNKD 120

Query: 121 FIPLYLKATKAFRDTEFQEFWSQIPMCP 149
              ++ K+ KA R++ F+  WSQ    P
Sbjct: 121 IFDIFDKSAKASRESVFKYHWSQFAGYP 148

[Close]

BLAST of Lag0039274 vs. NCBI nr
Match: XP_038882416.1 (protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-35
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = 0


Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M + ++IRGFLN IRPIL+V  TH+RGK+ GKLL A G+DGNNQIY V FGI  GET ES
Sbjct: 177 MALNASIRGFLNCIRPILIVGGTHLRGKYSGKLLLATGVDGNNQIYPVTFGISSGETNES 236

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           W +F +++  AIGQ++ +VIVSDRH SI K   TV P+A H  CIHHL+ NL   FK+ D
Sbjct: 237 WVWFLQQLICAIGQVHDVVIVSDRHPSIKKVIITVFPEAFHGICIHHLKANLLVNFKNKD 296

Query: 121 FIPLYLKATKAFRDTEFQ 139
            + ++ KA KA R+  F+
Sbjct: 297 ILDIFDKAAKASREFVFK 314

[Close]

BLAST of Lag0039274 vs. NCBI nr
Match: XP_022147769.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-33
Identity = 71/150 (47.33%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M +  +IRGF + IRPILVVD  H++GK+ G LLTA  IDGNNQIY + FG+   E  +S
Sbjct: 67  MALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYPLAFGVVDKECDDS 126

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           WT+F  ++   IG +N LV VSDRH+SI  +  TV P+AAHV C+HHL   L  KF++  
Sbjct: 127 WTWFIERVKICIGDINGLVFVSDRHQSITNSVATVFPNAAHVTCMHHLTMKLNEKFRNEG 186

Query: 121 FIPLYLKATKAFRDTEFQEFWSQIPMCPKI 151
              ++ KA KAF+ ++F+ +W Q+   P++
Sbjct: 187 MQIIFAKAAKAFKVSKFRYYWGQLAGFPRV 216

[Close]

BLAST of Lag0039274 vs. NCBI nr
Match: XP_022157237.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 1   MEIRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES 60
           M +  +IRGF + IRPILVVD  H++GK+ G LLTA  IDGNNQIY + FG+      +S
Sbjct: 193 MALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYHLAFGVVDKARDDS 252

Query: 61  WTYFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHD 120
           WT+F  ++   IG +N LV +SDRH+SI  +  TV PDAAHV C+HHL   L  KF++  
Sbjct: 253 WTWFIERVKICIGDINGLVFISDRHQSITNSVATVFPDAAHVTCMHHLAMKLNEKFRNEG 312

Query: 121 FIPLYLKATKAFRDTEFQEFWSQIPMCPKI 151
              ++ KA KAF+ ++F+ +W Q+   P +
Sbjct: 313 MQIIFAKAAKAFKISKFRYYWGQLAGFPGV 342

[Close]

BLAST of Lag0039274 vs. NCBI nr
Match: XP_022156566.1 (uncharacterized protein LOC111023441 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-31
Identity = 70/148 (47.30%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 3   IRSTIRGFLNSIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVESWT 62
           I  +IRGF + IRPILVVD  H++GK+ G LLTA  IDGNNQIY + F +   E+ +SWT
Sbjct: 16  IGCSIRGFGSCIRPILVVDGAHLKGKYRGVLLTASSIDGNNQIYPLAFSVVDKESDDSWT 75

Query: 63  YFFRKIDRAIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFI 122
           +F  ++   IG +N LV VSDRH+SI  +  TV PDAA+V C+HHL   L  KF++    
Sbjct: 76  WFIERVKICIGDINGLVFVSDRHQSITNSVATVFPDAAYVTCMHHLAMKLNEKFRNEGMQ 135

Query: 123 PLYLKATKAFRDTEFQEFWSQIPMCPKI 151
             + KA K F+ ++F+ +W Q+   PK+
Sbjct: 136 ITFSKAAKTFKVSKFRYYWGQLAGFPKV 163

[Close]

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 34/137 (24.82%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 13  SIRPILVVDETHIRGKFGGKLLTA--VGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDR 72
           S   ++  D T++  KF  KL  A  +G++ ++Q  L+G  +   E++E++ +  +   R
Sbjct: 271 SFNDVVSFDTTYV--KFNDKLPLALFIGVNHHSQPMLLGCALVADESMETFVWLIKTWLR 330

Query: 73  AIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKF-----KDHDFIPLY 132
           A+G   P VI++D+ K ++ A   ++P+  H + + H+ E +   F     +  +F+  +
Sbjct: 331 AMGGRAPKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEYFSHVMKRHENFLLKF 390

Query: 133 LKAT-KAFRDTEFQEFW 142
            K   +++ D EF   W
Sbjct: 391 NKCIFRSWTDDEFDMRW 405

[Close]

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: Q6NQJ7 (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 30/138 (21.74%), Postives = 69/138 (50.00%), Query Frame = 0


Query: 13  SIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDRAI 72
           S   ++  + ++   K+   L+  VG++ + Q  L+G G+   +TV ++ +  +    A+
Sbjct: 208 SFSDVVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSWLVAM 267

Query: 73  GQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLK------TKFKDHDFIPLYL 132
           G   P V+++D++ +I  A   V+P+  H YC+ H+ + L       + ++D     L+ 
Sbjct: 268 GGQKPKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVLDQLPRNLDYWSMWQDTFMKKLFK 327

Query: 133 KATKAFRDTEFQEFWSQI 145
              +++ + EF   W ++
Sbjct: 328 CIYRSWSEEEFDRRWLKL 345

[Close]

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: P59787 (Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0125 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.9e-05
Identity = 32/124 (25.81%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 16  PILVVDETHIRGKFGGKLLT-----AVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDR 75
           P L+ D  +I+ +   ++L+     A+GI  +    ++GF I  GE+ E+WT FF  + +
Sbjct: 162 PYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYL-K 221

Query: 76  AIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFIPLYLKATK 135
             G     +++SD HK ++ A +    + +   C  H   N+        F  +  K +K
Sbjct: 222 ERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNI--------FTTIPKKNSK 276

[Close]

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: P19775 (Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Staphylococcus aureus OX=1280 GN=tnp PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.9e-05
Identity = 32/124 (25.81%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 16  PILVVDETHIRGKFGGKLLT-----AVGIDGNNQIYLVGFGIGRGETVESWTYFFRKIDR 75
           P L+ D  +I+ +   ++L+     A+GI  +    ++GF I  GE+ E+WT FF  + +
Sbjct: 162 PYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYL-K 221

Query: 76  AIGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKFKDHDFIPLYLKATK 135
             G     +++SD HK ++ A +    + +   C  H   N+        F  +  K +K
Sbjct: 222 ERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNI--------FTTIPKKNSK 276

[Close]

BLAST of Lag0039274 vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 30/139 (21.58%), Postives = 63/139 (45.32%), Query Frame = 0


Query: 13  SIRPILVVDETHIRGKFGGKLLTAVGIDGNNQIYLVGFGIGRGETVES-WTYFFRKIDRA 72
           S   +++ D  ++R  +       +G+  + Q  L+G  +  GE  ES +++ FR   +A
Sbjct: 215 SFSDVVLFDTFYVRNGYRIPFAPFIGVSHHRQYVLLGCAL-IGEVSESTYSWLFRTWLKA 274

Query: 73  IGQLNPLVIVSDRHKSILKAAQTVIPDAAHVYCIHHLQENLKTKF-----KDHDFIPLYL 132
           +G   P V+++D+ K +      V PD  H++C+  +   +         +D  F+  + 
Sbjct: 275 VGGQAPGVMITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKISEMLNPFVSQDDGFMESFG 334

Query: 133 K-ATKAFRDTEFQEFWSQI 145
                ++ D  F+  WS +
Sbjct: 335 NCVASSWTDEHFERRWSNM 352

The following BLAST results are available for this feature:

BLAST of Lag0039274 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885923.1	3.7e-36	53.38	uncharacterized protein LOC120076231 [Benincasa hispida]	[more]
XP_038882416.1	2.4e-35	55.80	protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida]	[more]
XP_022147769.1	5.0e-33	47.33	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022157237.1	2.5e-32	46.67	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022156566.1	1.2e-31	47.30	uncharacterized protein LOC111023441 [Momordica charantia]	[more]

BLAST of Lag0039274 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SWG3	1.1e-06	24.82	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]
Q6NQJ7	3.2e-06	21.74	Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=...	[more]
P59787	7.9e-05	25.81	Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Enteroc...	[more]
P19775	7.9e-05	25.81	Transposase for insertion sequence element IS256 in transposon Tn4001 OS=Staphyl...	[more]
Q3EBQ3	3.9e-04	21.58	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018289	MULE transposase domain	PFAM	PF10551	MULE	coord: 17..111 e-value: 1.8E-21 score: 76.4
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 7..144
None	No IPR available	PANTHER	PTHR31973:SF106	OS09G0268600 PROTEIN	coord: 7..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039274.1	Lag0039274.1	mRNA