Lag0028661 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028661
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	MFS domain-containing protein
Location	chr8: 27827135 .. 27827598 (+)
RNA-Seq Expression	Lag0028661
Synteny	Lag0028661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCGGCGGCGGCCAGTCCGTACGACCCAGGTAGAGAGGTCGACCTCGTAAAGTCCTCCATGAACCACAGAACGAACAAGATAACTAGAAACTGCCTTCACCACCGCCGAAAGTTGCAGATAAACCGTCGGAGAAGAAGGCGAAAACCACCGGTGAAGACTTAGTTCTGAGAATGTTGGAATCTTCCCGATGGTTGGTGTTGTAGGGCCGTTTACAGGACGCGAAAGACGTTCTATCGAAAGTTTCGAATACAGAGGAAGAAACAGCGCTTCGATTCAGAGACATTAAAGTCGCGACTGGAATTCCCGAGGATTGCGAGCAGGATGTTATGAAATTGCACAAAAAAATTCACGGCAAGGGGGTTTTAGAGAAAGCTGATATTGACTCCGACGCCCGCCGTGCGGTAGATTCTGGTGGCAGCGGTCGAGTTGCATTTCTTCGAACACGCTATGGGCATTGA

mRNA sequence

ATGATGGCGGCGGCGGCCAGTCCGTACGACCCAGGTAGAGAGGTCGACCTCGTAAAGTCCTCCATGAACCACAGAACGAACAAGATAACTAGAAACTGCCTTCACCACCGCCGAAAGTTGCAGATAAACCGTCGGAGAAGAAGGCGAAAACCACCGGGCCGTTTACAGGACGCGAAAGACGTTCTATCGAAAGTTTCGAATACAGAGGAAGAAACAGCGCTTCGATTCAGAGACATTAAAGTCGCGACTGGAATTCCCGAGGATTGCGAGCAGGATGTTATGAAATTGCACAAAAAAATTCACGGCAAGGGGGTTTTAGAGAAAGCTGATATTGACTCCGACGCCCGCCGTGCGGTAGATTCTGGTGGCAGCGGTCGAGTTGCATTTCTTCGAACACGCTATGGGCATTGA

Coding sequence (CDS)

ATGATGGCGGCGGCGGCCAGTCCGTACGACCCAGGTAGAGAGGTCGACCTCGTAAAGTCCTCCATGAACCACAGAACGAACAAGATAACTAGAAACTGCCTTCACCACCGCCGAAAGTTGCAGATAAACCGTCGGAGAAGAAGGCGAAAACCACCGGGCCGTTTACAGGACGCGAAAGACGTTCTATCGAAAGTTTCGAATACAGAGGAAGAAACAGCGCTTCGATTCAGAGACATTAAAGTCGCGACTGGAATTCCCGAGGATTGCGAGCAGGATGTTATGAAATTGCACAAAAAAATTCACGGCAAGGGGGTTTTAGAGAAAGCTGATATTGACTCCGACGCCCGCCGTGCGGTAGATTCTGGTGGCAGCGGTCGAGTTGCATTTCTTCGAACACGCTATGGGCATTGA

Protein sequence

MMAAAASPYDPGREVDLVKSSMNHRTNKITRNCLHHRRKLQINRRRRRRKPPGRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKKIHGKGVLEKADIDSDARRAVDSGGSGRVAFLRTRYGH

Homology

[Close]

BLAST of Lag0028661 vs. NCBI nr
Match: XP_038883910.1 (probable polyol transporter 6 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKKIHGKGV 106
           GRL+DAK+VLSKVSNTEEE  LRF+DIK+A GIPEDCEQDV+K+H+K HG+GV
Sbjct: 224 GRLKDAKEVLSKVSNTEEEALLRFKDIKLAAGIPEDCEQDVVKMHRKTHGEGV 276

[Close]

BLAST of Lag0028661 vs. NCBI nr
Match: KAA0036241.1 (putative polyol transporter 6 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-14
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKKIHGKGV 106
           GRL+DA++VLSKVSNTEEE  +RFRDIK+A G+PEDCEQDV+K+H+K HG+GV
Sbjct: 214 GRLKDAREVLSKVSNTEEEAVVRFRDIKLAAGVPEDCEQDVVKMHRKTHGEGV 266

[Close]

BLAST of Lag0028661 vs. NCBI nr
Match: XP_008440694.1 (PREDICTED: probable polyol transporter 6 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-14
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKKIHGKGV 106
           GRL+DA++VLSKVSNTEEE  +RFRDIK+A G+PEDCEQDV+K+H+K HG+GV
Sbjct: 214 GRLKDAREVLSKVSNTEEEAVVRFRDIKLAAGVPEDCEQDVVKMHRKTHGEGV 266

[Close]

BLAST of Lag0028661 vs. NCBI nr
Match: XP_011658491.1 (probable polyol transporter 6 [Cucumis sativus] >KGN48817.1 hypothetical protein Csa_002831 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-14
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKKIHGKGV 106
           GRL+DA++VLSKVSNTEEE  +RFRDIK+A G+PEDCEQDV+K+H+K HG+GV
Sbjct: 214 GRLKDAREVLSKVSNTEEEAVVRFRDIKLAAGVPEDCEQDVVKMHRKTHGEGV 266

[Close]

BLAST of Lag0028661 vs. NCBI nr
Match: TYK12636.1 (putative polyol transporter 6 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-14
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKKIHGKGV 106
           GRL+DA++VLSKVSNTEEE  +RFRDIK+A G+PEDCEQDV+K+H+K HG+GV
Sbjct: 214 GRLKDAREVLSKVSNTEEEAVVRFRDIKLAAGVPEDCEQDVVKMHRKTHGEGV 266

[Close]

BLAST of Lag0028661 vs. ExPASy Swiss-Prot
Match: Q8GXR2 (Probable polyol transporter 6 OS=Arabidopsis thaliana OX=3702 GN=PLT6 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-08
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLH-KKIHGKGV 106
           GRL++ K++L  VSN+ EE  LRF+DIK A GI   C  DV+K+  KK HG+GV
Sbjct: 207 GRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDPKCVDDVVKMEGKKTHGEGV 260

[Close]

BLAST of Lag0028661 vs. ExPASy Swiss-Prot
Match: Q8VZ80 (Polyol transporter 5 OS=Arabidopsis thaliana OX=3702 GN=PLT5 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 9.6e-07
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKLHKK-IHGKGV 106
           GRL DAK VL K S++  E  LR  DIK A GIP DC  DV+++ ++  HG+GV
Sbjct: 226 GRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVVQVSRRNSHGEGV 279

[Close]

BLAST of Lag0028661 vs. ExPASy Swiss-Prot
Match: Q9XIH6 (Putative polyol transporter 2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.8e-06
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKL-HKKIHGKGV 106
           GRL DA  VL K SNT+EE   R  DIK A GIP+D   DV+ + +KK  GKGV
Sbjct: 216 GRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIPDDMTDDVIVVPNKKSAGKGV 269

[Close]

BLAST of Lag0028661 vs. ExPASy Swiss-Prot
Match: Q9XIH7 (Putative polyol transporter 1 OS=Arabidopsis thaliana OX=3702 GN=PLT1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-06
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 53  GRLQDAKDVLSKVSNTEEETALRFRDIKVATGIPEDCEQDVMKL-HKKIHGKGV 106
           GRL DA  VL K SNT+EE   R  DIK A GIP+D   DV+ + +KK  GKGV
Sbjct: 216 GRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPDDMTDDVIVVPNKKSAGKGV 269

The following BLAST results are available for this feature:

BLAST of Lag0028661 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883910.1	1.2e-14	77.36	probable polyol transporter 6 [Benincasa hispida]	[more]
KAA0036241.1	2.7e-14	73.58	putative polyol transporter 6 [Cucumis melo var. makuwa]	[more]
XP_008440694.1	2.7e-14	73.58	PREDICTED: probable polyol transporter 6 [Cucumis melo]	[more]
XP_011658491.1	2.7e-14	73.58	probable polyol transporter 6 [Cucumis sativus] >KGN48817.1 hypothetical protein...	[more]
TYK12636.1	2.7e-14	73.58	putative polyol transporter 6 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0028661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXR2	5.1e-08	53.70	Probable polyol transporter 6 OS=Arabidopsis thaliana OX=3702 GN=PLT6 PE=2 SV=2	[more]
Q8VZ80	9.6e-07	51.85	Polyol transporter 5 OS=Arabidopsis thaliana OX=3702 GN=PLT5 PE=1 SV=2	[more]
Q9XIH6	4.8e-06	55.56	Putative polyol transporter 2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=3 SV=1	[more]
Q9XIH7	8.1e-06	55.56	Putative polyol transporter 1 OS=Arabidopsis thaliana OX=3702 GN=PLT1 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028661.1	Lag0028661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0022857	transmembrane transporter activity