Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCACCCATGACAACACCATCTTAGTGGAGAGAGTTATGCTCATCTACTATATCATGAAGGGGTTGGAGATTAACATCGGGGGCATAATCAGGGAGGAGATTCTTGCCTATGGAAGGAAACGAGCAAAAAAGCTTTTGTTTGGATCATTGATCACCCAGCTATGTCAGATGATGAAGATAGTTCCTGGTAAGGATGAAGAGTGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCGGGAAGCTTCAACAGAATAACATCCAAAGGAAAGAAAAAGCCTCCACATCTCAAGCCACACCACCATCAGGGCTAAATACGGTTTCTCCATCCCAACACACTAATTTTTCAGGGCCCTCACTGCCATCTGAAGCCCTAGCAATTGCCTACCAACAACTGGATGAAATCAAGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCAAGTATTTCTCCTGTCTTTCCCGATTTCCCTCAATCGGTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGATGATGTAAATGAAAATGACGATGAAGAGAAAGAAAGTTCCTCAGATGAGGACTAG
mRNA sequence
ATGCCAACCACCCATGACAACACCATCTTAGTGGAGAGAGTTATGCTCATCTACTATATCATGAAGGGGTTGGAGATTAACATCGGGGGCATAATCAGGGAGGAGATTCTTGCCTATGGAAGGAAACGAGCAAAAAAGCTTTTGTTTGGATCATTGATCACCCAGCTATGTCAGATGATGAAGATAGTTCCTGGTAAGGATGAAGAGTGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCGGGAAGCTTCAACAGAATAACATCCAAAGGAAAGAAAAAGCCTCCACATCTCAAGCCACACCACCATCAGGGCTAAATACGGTTTCTCCATCCCAACACACTAATTTTTCAGGGCCCTCACTGCCATCTGAAGCCCTAGCAATTGCCTACCAACAACTGGATGAAATCAAGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCAAGTATTTCTCCTGTCTTTCCCGATTTCCCTCAATCGGTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGATGATGTAAATGAAAATGACGATGAAGAGAAAGAAAGTTCCTCAGATGAGGACTAG
Coding sequence (CDS)
ATGCCAACCACCCATGACAACACCATCTTAGTGGAGAGAGTTATGCTCATCTACTATATCATGAAGGGGTTGGAGATTAACATCGGGGGCATAATCAGGGAGGAGATTCTTGCCTATGGAAGGAAACGAGCAAAAAAGCTTTTGTTTGGATCATTGATCACCCAGCTATGTCAGATGATGAAGATAGTTCCTGGTAAGGATGAAGAGTGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCGGGAAGCTTCAACAGAATAACATCCAAAGGAAAGAAAAAGCCTCCACATCTCAAGCCACACCACCATCAGGGCTAAATACGGTTTCTCCATCCCAACACACTAATTTTTCAGGGCCCTCACTGCCATCTGAAGCCCTAGCAATTGCCTACCAACAACTGGATGAAATCAAGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCAAGTATTTCTCCTGTCTTTCCCGATTTCCCTCAATCGGTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGATGATGTAAATGAAAATGACGATGAAGAGAAAGAAAGTTCCTCAGATGAGGACTAG
Protein sequence
MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMMKIVPGKDEECHFFKPTIDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQSVLPQEDKDSDEEDDVNENDDEEKESSSDED
Homology
BLAST of Lag0028193 vs. NCBI nr
Match:
PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])
HSP 1 Score: 70.9 bits (172), Expect = 1.5e-08
Identity = 56/201 (27.86%), Postives = 96/201 (47.76%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
+PTTH T+ +R++L+Y ++ G IN+G +I EI A +++ L F SLITQLC+
Sbjct: 57 LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKL-QQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFS 120
+ +EE ID + ++ Q+ + ++ STS+ T S +
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176
Query: 121 GPSLPSEALAIAYQQ---LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
S+ Y L + +WAY+KERD A+++ + P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236
Query: 181 SVLPQEDKDSDEEDDVNENDD 198
+L D + + E D + +++
Sbjct: 237 ELLQDLDYEYEAESDKDGSNE 257
BLAST of Lag0028193 vs. NCBI nr
Match:
PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])
HSP 1 Score: 68.9 bits (167), Expect = 5.7e-08
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
+PTTH + +R++L++ ++ G IN+G +I EI A ++ L F SLIT+LC+
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFSG 120
+ +EE ID + ++ Q E + S P S + S TN G
Sbjct: 176 PFL--VNEEKLHNTGEIDAIAVARITQ------EGPTESTQQPSSSRPAAASSSRTN--G 235
Query: 121 PSLPS-EALAIAYQQLDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQSVL 180
L +AL Q + + +WAY+KERD A+++ + P FP FPQ +L
Sbjct: 236 DVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEIL 295
Query: 181 PQEDKDSDEEDDVNENDD 198
D + + E D + +++
Sbjct: 296 QDLDYEYEAESDKDGSNE 303
BLAST of Lag0028193 vs. NCBI nr
Match:
MCI09484.1 (hypothetical protein [Trifolium medium])
HSP 1 Score: 65.9 bits (159), Expect = 4.8e-07
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKK--LLFGSLITQLCQ 60
MPTTH+ T+ R++L++ I+ G +IN+G II +EI+ K++ + L F LIT+LC+
Sbjct: 40 MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99
Query: 61 MMKI-VPGKDEECHFFKPT--IDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQH 120
+ V G+DE F+PT D I L + N RK + +AT
Sbjct: 100 KNLVHVSGRDE---VFQPTNSFDQKAIETLLKGNTGRKPRQQLPEAT------------- 159
Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAY 149
S + + A+ ++ + + N++TYWA+
Sbjct: 160 -----TSAAAVSQAVDAEEFMKFRKNMKTYWAW 171
BLAST of Lag0028193 vs. NCBI nr
Match:
PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])
HSP 1 Score: 65.5 bits (158), Expect = 6.3e-07
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
+PTTH T+ +R++L++ ++ G IN+G +I EI A ++ L F SLIT+LC+
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKLQQN--NIQRKEKASTSQATPPSGLNTVSPSQHTNF 120
+ +EE ID + ++ Q ++ +S+ AT S Q
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305
Query: 121 SGPSLPSEALAIAYQQ--LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
L + + + L + +WAY+KERD A+++ + P FP FPQ
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQ 365
Query: 181 SVLPQEDKDSDEEDDVNENDD 198
+L D + + E D + +++
Sbjct: 366 EILKDLDYEYEAESDKDGSNE 386
BLAST of Lag0028193 vs. NCBI nr
Match:
KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])
HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
MPT+H+ T+ +R++L++ I+ G I+IG II E +++A L+F +LIT LC+
Sbjct: 175 MPTSHNTTVSCQRMLLLHSILTGRTIDIGKIIVEHAHLCLKRQASALVFPNLITALCRKK 234
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKLQQNNI-----QRKEKASTSQATPPSGLNTVSPSQH 120
K+ +E LS I L + I ++ K +AT + V+ S H
Sbjct: 235 KVREEMFDEI--------LSGIAGLNKAKIPMLLGYKEAKGKKHEAT----TSRVASSPH 294
Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAYAKERD 154
S L +A+ +Q + ++ D L Y+AYAK RD
Sbjct: 295 VRASSTDL-EQAVQRTHQHVGQLSDKLMVYFAYAKRRD 319
BLAST of Lag0028193 vs. ExPASy TrEMBL
Match:
A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 7.3e-09
Identity = 56/201 (27.86%), Postives = 96/201 (47.76%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
+PTTH T+ +R++L+Y ++ G IN+G +I EI A +++ L F SLITQLC+
Sbjct: 57 LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKL-QQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFS 120
+ +EE ID + ++ Q+ + ++ STS+ T S +
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176
Query: 121 GPSLPSEALAIAYQQ---LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
S+ Y L + +WAY+KERD A+++ + P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236
Query: 181 SVLPQEDKDSDEEDDVNENDD 198
+L D + + E D + +++
Sbjct: 237 ELLQDLDYEYEAESDKDGSNE 257
BLAST of Lag0028193 vs. ExPASy TrEMBL
Match:
A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
+PTTH + +R++L++ ++ G IN+G +I EI A ++ L F SLIT+LC+
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFSG 120
+ +EE ID + ++ Q E + S P S + S TN G
Sbjct: 176 PFL--VNEEKLHNTGEIDAIAVARITQ------EGPTESTQQPSSSRPAAASSSRTN--G 235
Query: 121 PSLPS-EALAIAYQQLDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQSVL 180
L +AL Q + + +WAY+KERD A+++ + P FP FPQ +L
Sbjct: 236 DVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEIL 295
Query: 181 PQEDKDSDEEDDVNENDD 198
D + + E D + +++
Sbjct: 296 QDLDYEYEAESDKDGSNE 303
BLAST of Lag0028193 vs. ExPASy TrEMBL
Match:
A0A392PCH7 (Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKK--LLFGSLITQLCQ 60
MPTTH+ T+ R++L++ I+ G +IN+G II +EI+ K++ + L F LIT+LC+
Sbjct: 40 MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99
Query: 61 MMKI-VPGKDEECHFFKPT--IDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQH 120
+ V G+DE F+PT D I L + N RK + +AT
Sbjct: 100 KNLVHVSGRDE---VFQPTNSFDQKAIETLLKGNTGRKPRQQLPEAT------------- 159
Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAY 149
S + + A+ ++ + + N++TYWA+
Sbjct: 160 -----TSAAAVSQAVDAEEFMKFRKNMKTYWAW 171
BLAST of Lag0028193 vs. ExPASy TrEMBL
Match:
A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
+PTTH T+ +R++L++ ++ G IN+G +I EI A ++ L F SLIT+LC+
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKLQQN--NIQRKEKASTSQATPPSGLNTVSPSQHTNF 120
+ +EE ID + ++ Q ++ +S+ AT S Q
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305
Query: 121 SGPSLPSEALAIAYQQ--LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
L + + + L + +WAY+KERD A+++ + P FP FPQ
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQ 365
Query: 181 SVLPQEDKDSDEEDDVNENDD 198
+L D + + E D + +++
Sbjct: 366 EILKDLDYEYEAESDKDGSNE 386
BLAST of Lag0028193 vs. ExPASy TrEMBL
Match:
A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)
HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 0
Query: 1 MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
MPT+H+ T+ +R++L++ I+ G I+IG II E +++A L+F +LIT LC+
Sbjct: 175 MPTSHNTTVSCQRMLLLHSILTGRTIDIGKIIVEHAHLCLKRQASALVFPNLITALCRKK 234
Query: 61 KIVPGKDEECHFFKPTIDLSLIGKLQQNNI-----QRKEKASTSQATPPSGLNTVSPSQH 120
K+ +E LS I L + I ++ K +AT + V+ S H
Sbjct: 235 KVREEMFDEI--------LSGIAGLNKAKIPMLLGYKEAKGKKHEAT----TSRVASSPH 294
Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAYAKERD 154
S L +A+ +Q + ++ D L Y+AYAK RD
Sbjct: 295 VRASSTDL-EQAVQRTHQHVGQLSDKLMVYFAYAKRRD 319
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
PON59596.1 | 1.5e-08 | 27.86 | hypothetical protein PanWU01x14_158080 [Parasponia andersonii] | [more] |
PON78020.1 | 5.7e-08 | 28.79 | hypothetical protein PanWU01x14_023740 [Parasponia andersonii] | [more] |
MCI09484.1 | 4.8e-07 | 30.72 | hypothetical protein [Trifolium medium] | [more] |
PON46472.1 | 6.3e-07 | 26.37 | hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii] | [more] |
KAE8695166.1 | 1.1e-06 | 31.01 | hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2P5CEY2 | 7.3e-09 | 27.86 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... | [more] |
A0A2P5DXM3 | 2.8e-08 | 28.79 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... | [more] |
A0A392PCH7 | 2.3e-07 | 30.72 | Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1 | [more] |
A0A2P5BCG4 | 3.0e-07 | 26.37 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
A0A6A2ZUE4 | 5.2e-07 | 31.01 | Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon... | [more] |
Match Name | E-value | Identity | Description | |