Lag0028193.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028193.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Drebrin-like
Location	chr8: 15138558 .. 15139181 (+)
Sequence length	624
RNA-Seq Expression	Lag0028193.1
Synteny	Lag0028193.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCACCCATGACAACACCATCTTAGTGGAGAGAGTTATGCTCATCTACTATATCATGAAGGGGTTGGAGATTAACATCGGGGGCATAATCAGGGAGGAGATTCTTGCCTATGGAAGGAAACGAGCAAAAAAGCTTTTGTTTGGATCATTGATCACCCAGCTATGTCAGATGATGAAGATAGTTCCTGGTAAGGATGAAGAGTGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCGGGAAGCTTCAACAGAATAACATCCAAAGGAAAGAAAAAGCCTCCACATCTCAAGCCACACCACCATCAGGGCTAAATACGGTTTCTCCATCCCAACACACTAATTTTTCAGGGCCCTCACTGCCATCTGAAGCCCTAGCAATTGCCTACCAACAACTGGATGAAATCAAGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCAAGTATTTCTCCTGTCTTTCCCGATTTCCCTCAATCGGTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGATGATGTAAATGAAAATGACGATGAAGAGAAAGAAAGTTCCTCAGATGAGGACTAG

mRNA sequence

ATGCCAACCACCCATGACAACACCATCTTAGTGGAGAGAGTTATGCTCATCTACTATATCATGAAGGGGTTGGAGATTAACATCGGGGGCATAATCAGGGAGGAGATTCTTGCCTATGGAAGGAAACGAGCAAAAAAGCTTTTGTTTGGATCATTGATCACCCAGCTATGTCAGATGATGAAGATAGTTCCTGGTAAGGATGAAGAGTGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCGGGAAGCTTCAACAGAATAACATCCAAAGGAAAGAAAAAGCCTCCACATCTCAAGCCACACCACCATCAGGGCTAAATACGGTTTCTCCATCCCAACACACTAATTTTTCAGGGCCCTCACTGCCATCTGAAGCCCTAGCAATTGCCTACCAACAACTGGATGAAATCAAGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCAAGTATTTCTCCTGTCTTTCCCGATTTCCCTCAATCGGTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGATGATGTAAATGAAAATGACGATGAAGAGAAAGAAAGTTCCTCAGATGAGGACTAG

Coding sequence (CDS)

ATGCCAACCACCCATGACAACACCATCTTAGTGGAGAGAGTTATGCTCATCTACTATATCATGAAGGGGTTGGAGATTAACATCGGGGGCATAATCAGGGAGGAGATTCTTGCCTATGGAAGGAAACGAGCAAAAAAGCTTTTGTTTGGATCATTGATCACCCAGCTATGTCAGATGATGAAGATAGTTCCTGGTAAGGATGAAGAGTGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCGGGAAGCTTCAACAGAATAACATCCAAAGGAAAGAAAAAGCCTCCACATCTCAAGCCACACCACCATCAGGGCTAAATACGGTTTCTCCATCCCAACACACTAATTTTTCAGGGCCCTCACTGCCATCTGAAGCCCTAGCAATTGCCTACCAACAACTGGATGAAATCAAGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCAAGTATTTCTCCTGTCTTTCCCGATTTCCCTCAATCGGTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGATGATGTAAATGAAAATGACGATGAAGAGAAAGAAAGTTCCTCAGATGAGGACTAG

Protein sequence

MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMMKIVPGKDEECHFFKPTIDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQSVLPQEDKDSDEEDDVNENDDEEKESSSDED

Homology

[Close]

BLAST of Lag0028193.1 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-08
Identity = 56/201 (27.86%), Postives = 96/201 (47.76%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           +PTTH  T+  +R++L+Y ++ G  IN+G +I  EI A   +++  L F SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKL-QQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFS 120
           +     +EE       ID   + ++ Q+   +  ++ STS+ T  S             +
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 GPSLPSEALAIAYQQ---LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
                S+     Y     L       + +WAY+KERD A+++   +      P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236

Query: 181 SVLPQEDKDSDEEDDVNENDD 198
            +L   D + + E D + +++
Sbjct: 237 ELLQDLDYEYEAESDKDGSNE 257

[Close]

BLAST of Lag0028193.1 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-08
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           +PTTH   +  +R++L++ ++ G  IN+G +I  EI A   ++   L F SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFSG 120
             +   +EE       ID   + ++ Q      E  + S   P S     + S  TN  G
Sbjct: 176 PFL--VNEEKLHNTGEIDAIAVARITQ------EGPTESTQQPSSSRPAAASSSRTN--G 235

Query: 121 PSLPS-EALAIAYQQLDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQSVL 180
             L   +AL     Q +      + +WAY+KERD A+++   +      P FP FPQ +L
Sbjct: 236 DVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEIL 295

Query: 181 PQEDKDSDEEDDVNENDD 198
              D + + E D + +++
Sbjct: 296 QDLDYEYEAESDKDGSNE 303

[Close]

BLAST of Lag0028193.1 vs. NCBI nr
Match: MCI09484.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-07
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKK--LLFGSLITQLCQ 60
           MPTTH+ T+   R++L++ I+ G +IN+G II +EI+    K++ +  L F  LIT+LC+
Sbjct: 40  MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99

Query: 61  MMKI-VPGKDEECHFFKPT--IDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQH 120
              + V G+DE    F+PT   D   I  L + N  RK +    +AT             
Sbjct: 100 KNLVHVSGRDE---VFQPTNSFDQKAIETLLKGNTGRKPRQQLPEAT------------- 159

Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAY 149
                 S  + + A+  ++  + + N++TYWA+
Sbjct: 160 -----TSAAAVSQAVDAEEFMKFRKNMKTYWAW 171

[Close]

BLAST of Lag0028193.1 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-07
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           +PTTH  T+  +R++L++ ++ G  IN+G +I  EI A   ++   L F SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKLQQN--NIQRKEKASTSQATPPSGLNTVSPSQHTNF 120
           +     +EE       ID   + ++ Q       ++ +S+  AT  S        Q    
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305

Query: 121 SGPSLPSEALAIAYQQ--LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
               L  + +   +    L       + +WAY+KERD A+++   +      P FP FPQ
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQ 365

Query: 181 SVLPQEDKDSDEEDDVNENDD 198
            +L   D + + E D + +++
Sbjct: 366 EILKDLDYEYEAESDKDGSNE 386

[Close]

BLAST of Lag0028193.1 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           MPT+H+ T+  +R++L++ I+ G  I+IG II E      +++A  L+F +LIT LC+  
Sbjct: 175 MPTSHNTTVSCQRMLLLHSILTGRTIDIGKIIVEHAHLCLKRQASALVFPNLITALCRKK 234

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKLQQNNI-----QRKEKASTSQATPPSGLNTVSPSQH 120
           K+     +E         LS I  L +  I      ++ K    +AT     + V+ S H
Sbjct: 235 KVREEMFDEI--------LSGIAGLNKAKIPMLLGYKEAKGKKHEAT----TSRVASSPH 294

Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAYAKERD 154
              S   L  +A+   +Q + ++ D L  Y+AYAK RD
Sbjct: 295 VRASSTDL-EQAVQRTHQHVGQLSDKLMVYFAYAKRRD 319

[Close]

BLAST of Lag0028193.1 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-09
Identity = 56/201 (27.86%), Postives = 96/201 (47.76%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           +PTTH  T+  +R++L+Y ++ G  IN+G +I  EI A   +++  L F SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKL-QQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFS 120
           +     +EE       ID   + ++ Q+   +  ++ STS+ T  S             +
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 GPSLPSEALAIAYQQ---LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
                S+     Y     L       + +WAY+KERD A+++   +      P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236

Query: 181 SVLPQEDKDSDEEDDVNENDD 198
            +L   D + + E D + +++
Sbjct: 237 ELLQDLDYEYEAESDKDGSNE 257

[Close]

BLAST of Lag0028193.1 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           +PTTH   +  +R++L++ ++ G  IN+G +I  EI A   ++   L F SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQHTNFSG 120
             +   +EE       ID   + ++ Q      E  + S   P S     + S  TN  G
Sbjct: 176 PFL--VNEEKLHNTGEIDAIAVARITQ------EGPTESTQQPSSSRPAAASSSRTN--G 235

Query: 121 PSLPS-EALAIAYQQLDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQSVL 180
             L   +AL     Q +      + +WAY+KERD A+++   +      P FP FPQ +L
Sbjct: 236 DVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEIL 295

Query: 181 PQEDKDSDEEDDVNENDD 198
              D + + E D + +++
Sbjct: 296 QDLDYEYEAESDKDGSNE 303

[Close]

BLAST of Lag0028193.1 vs. ExPASy TrEMBL
Match: A0A392PCH7 (Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKK--LLFGSLITQLCQ 60
           MPTTH+ T+   R++L++ I+ G +IN+G II +EI+    K++ +  L F  LIT+LC+
Sbjct: 40  MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99

Query: 61  MMKI-VPGKDEECHFFKPT--IDLSLIGKLQQNNIQRKEKASTSQATPPSGLNTVSPSQH 120
              + V G+DE    F+PT   D   I  L + N  RK +    +AT             
Sbjct: 100 KNLVHVSGRDE---VFQPTNSFDQKAIETLLKGNTGRKPRQQLPEAT------------- 159

Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAY 149
                 S  + + A+  ++  + + N++TYWA+
Sbjct: 160 -----TSAAAVSQAVDAEEFMKFRKNMKTYWAW 171

[Close]

BLAST of Lag0028193.1 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           +PTTH  T+  +R++L++ ++ G  IN+G +I  EI A   ++   L F SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKLQQN--NIQRKEKASTSQATPPSGLNTVSPSQHTNF 120
           +     +EE       ID   + ++ Q       ++ +S+  AT  S        Q    
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305

Query: 121 SGPSLPSEALAIAYQQ--LDEIKDNLRTYWAYAKERDEAIREFYLSITPSISPVFPDFPQ 180
               L  + +   +    L       + +WAY+KERD A+++   +      P FP FPQ
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQ 365

Query: 181 SVLPQEDKDSDEEDDVNENDD 198
            +L   D + + E D + +++
Sbjct: 366 EILKDLDYEYEAESDKDGSNE 386

[Close]

BLAST of Lag0028193.1 vs. ExPASy TrEMBL
Match: A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 1   MPTTHDNTILVERVMLIYYIMKGLEINIGGIIREEILAYGRKRAKKLLFGSLITQLCQMM 60
           MPT+H+ T+  +R++L++ I+ G  I+IG II E      +++A  L+F +LIT LC+  
Sbjct: 175 MPTSHNTTVSCQRMLLLHSILTGRTIDIGKIIVEHAHLCLKRQASALVFPNLITALCRKK 234

Query: 61  KIVPGKDEECHFFKPTIDLSLIGKLQQNNI-----QRKEKASTSQATPPSGLNTVSPSQH 120
           K+     +E         LS I  L +  I      ++ K    +AT     + V+ S H
Sbjct: 235 KVREEMFDEI--------LSGIAGLNKAKIPMLLGYKEAKGKKHEAT----TSRVASSPH 294

Query: 121 TNFSGPSLPSEALAIAYQQLDEIKDNLRTYWAYAKERD 154
              S   L  +A+   +Q + ++ D L  Y+AYAK RD
Sbjct: 295 VRASSTDL-EQAVQRTHQHVGQLSDKLMVYFAYAKRRD 319

The following BLAST results are available for this feature:

BLAST of Lag0028193.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PON59596.1	1.5e-08	27.86	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]
PON78020.1	5.7e-08	28.79	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
MCI09484.1	4.8e-07	30.72	hypothetical protein [Trifolium medium]	[more]
PON46472.1	6.3e-07	26.37	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
KAE8695166.1	1.1e-06	31.01	hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]	[more]

BLAST of Lag0028193.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028193.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CEY2	7.3e-09	27.86	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE...	[more]
A0A2P5DXM3	2.8e-08	28.79	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]
A0A392PCH7	2.3e-07	30.72	Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A2P5BCG4	3.0e-07	26.37	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A6A2ZUE4	5.2e-07	31.01	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon...	[more]

BLAST of Lag0028193.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..207

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0028193	Lag0028193	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0028193.1.exon1	Lag0028193.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0028193.1	cds.Lag0028193.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0028193.1	Lag0028193.1-protein	polypeptide