Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCGCCGTGCATTCTCTCCGCCGTCGCCGCCTTCTCCCTCCTCCTCCCCGCCGTCTCCGCCGACCAGGCACCGCCGCCTCCGCCCGCCGCCGCAAACCAAAATCCACAGCGACGCGGATCCTTAGCGCGCGAATTCCTTCAAGCACACAACAAAGTCCGGTCGACCTTTAAAGTTCCGCCATTAACGTGGGACAAGAATCTCACTCGATTCGCGCGGCGGTGGGGCGACAAACGCGCCGCCGATTGTAAAATGACTCATTCGTACGGTCCGTACGGCGAGAATCTGTTTTGGGGAAAATTAGGGCACTGGACGCCGTCGGCAGTGGTGGAATCGTGGGCTGGAGAGAGCAAATTCTACAATCTGAATAGCAATGAATGCGCCGCCGGCCAAATGTGCGGCCACTACACGCAGATTATTTGGAGGGAAACGCTCCGATTGGGATGTGCTAGAGTCAATTGCGTCAACGGAGAGTTGCTTGTGATTTGTGAGTACGATCCGCCGGGGAATTACGTCAATGAGAAACCGGTTTGA
mRNA sequence
ATGTCGCCGCCGTGCATTCTCTCCGCCGTCGCCGCCTTCTCCCTCCTCCTCCCCGCCGTCTCCGCCGACCAGGCACCGCCGCCTCCGCCCGCCGCCGCAAACCAAAATCCACAGCGACGCGGATCCTTAGCGCGCGAATTCCTTCAAGCACACAACAAAGTCCGGTCGACCTTTAAAGTTCCGCCATTAACGTGGGACAAGAATCTCACTCGATTCGCGCGGCGGTGGGGCGACAAACGCGCCGCCGATTGTAAAATGACTCATTCGTACGGTCCGTACGGCGAGAATCTGTTTTGGGGAAAATTAGGGCACTGGACGCCGTCGGCAGTGGTGGAATCGTGGGCTGGAGAGAGCAAATTCTACAATCTGAATAGCAATGAATGCGCCGCCGGCCAAATGTGCGGCCACTACACGCAGATTATTTGGAGGGAAACGCTCCGATTGGGATGTGCTAGAGTCAATTGCGTCAACGGAGAGTTGCTTGTGATTTGTGAGTACGATCCGCCGGGGAATTACGTCAATGAGAAACCGGTTTGA
Coding sequence (CDS)
ATGTCGCCGCCGTGCATTCTCTCCGCCGTCGCCGCCTTCTCCCTCCTCCTCCCCGCCGTCTCCGCCGACCAGGCACCGCCGCCTCCGCCCGCCGCCGCAAACCAAAATCCACAGCGACGCGGATCCTTAGCGCGCGAATTCCTTCAAGCACACAACAAAGTCCGGTCGACCTTTAAAGTTCCGCCATTAACGTGGGACAAGAATCTCACTCGATTCGCGCGGCGGTGGGGCGACAAACGCGCCGCCGATTGTAAAATGACTCATTCGTACGGTCCGTACGGCGAGAATCTGTTTTGGGGAAAATTAGGGCACTGGACGCCGTCGGCAGTGGTGGAATCGTGGGCTGGAGAGAGCAAATTCTACAATCTGAATAGCAATGAATGCGCCGCCGGCCAAATGTGCGGCCACTACACGCAGATTATTTGGAGGGAAACGCTCCGATTGGGATGTGCTAGAGTCAATTGCGTCAACGGAGAGTTGCTTGTGATTTGTGAGTACGATCCGCCGGGGAATTACGTCAATGAGAAACCGGTTTGA
Protein sequence
MSPPCILSAVAAFSLLLPAVSADQAPPPPPAAANQNPQRRGSLAREFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGHWTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVICEYDPPGNYVNEKPV
Homology
BLAST of Lag0027114 vs. NCBI nr
Match:
KAA0044057.1 (pathogenesis-related protein 1C-like [Cucumis melo var. makuwa])
HSP 1 Score: 274.2 bits (700), Expect = 7.7e-70
Identity = 129/187 (68.98%), Postives = 146/187 (78.07%), Query Frame = 0
Query: 1 MSPPCILSAVAAFS--LLLPAVSADQAPPPPPAAANQN-------PQRRGSLAREFLQAH 60
MS P I SA +FS L+L A P PP +A++N P RR + REFLQAH
Sbjct: 1 MSLPYITSAAFSFSFLLILHLAVAGVQPQSPPTSASKNSMTATTAPPRRRNYIREFLQAH 60
Query: 61 NKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGHWTPSAVV 120
NK RS F + PLTWDKNLTR+A RWG+KRA DC+M HSYGPYGEN+FWGKL HWTP+ VV
Sbjct: 61 NKFRSAFHIQPLTWDKNLTRYAWRWGEKRAEDCRMIHSYGPYGENMFWGKLEHWTPTEVV 120
Query: 121 ESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVICEYDPPGN 179
ESWAGE K+YNLN+NECA GQ CGHYTQIIW+E+LRLGCARVNC NGELLVICEYDPPGN
Sbjct: 121 ESWAGEEKYYNLNTNECADGQTCGHYTQIIWKESLRLGCARVNCDNGELLVICEYDPPGN 180
BLAST of Lag0027114 vs. NCBI nr
Match:
KAE8651020.1 (hypothetical protein Csa_001683 [Cucumis sativus])
HSP 1 Score: 258.5 bits (659), Expect = 4.4e-65
Identity = 112/147 (76.19%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 32 AANQNPQRRGSLAREFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYG 91
A +P+RR S REFLQAHNK RS F + PLTWD+NLTRFARRWG++RAADC+M HSYG
Sbjct: 3 ATTASPRRR-SYIREFLQAHNKFRSAFHIQPLTWDRNLTRFARRWGEQRAADCRMIHSYG 62
Query: 92 PYGENLFWGKLGHWTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCA 151
PYGEN+FWGKL HWTP+ VV SWAGE K YNL++NECA GQ CGHYTQIIW+E+LRLGC
Sbjct: 63 PYGENMFWGKLEHWTPTEVVNSWAGEDKHYNLDTNECADGQTCGHYTQIIWKESLRLGCV 122
Query: 152 RVNCVNGELLVICEYDPPGNYVNEKPV 179
RVNC NG LLVICEYDPPGNYVNEKP+
Sbjct: 123 RVNCDNGGLLVICEYDPPGNYVNEKPI 148
BLAST of Lag0027114 vs. NCBI nr
Match:
XP_022938296.1 (pathogenesis-related protein 1C-like [Cucurbita moschata])
HSP 1 Score: 245.0 bits (624), Expect = 5.0e-61
Identity = 113/183 (61.75%), Postives = 136/183 (74.32%), Query Frame = 0
Query: 1 MSPPCILSAVAA---FSLLLPAVSAD--QAPPPPPAAANQNPQRRGSLAREFLQAHNKVR 60
M+P +LSAV A SLL A + + P A A RR + EFL+ HNK R
Sbjct: 1 MAPSHVLSAVVAASSLSLLFLAATVETLTLPVATNALAPFLTNRRRTYREEFLEMHNKYR 60
Query: 61 STFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGHWTPSAVVESWA 120
+PPLTWD+NLTR+ARRWG KRA DCK+ HS+GPYGEN+FWG+L HWTPS VVESW
Sbjct: 61 GMVNLPPLTWDRNLTRYARRWGAKRAVDCKIVHSFGPYGENMFWGRLDHWTPSKVVESWG 120
Query: 121 GESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVICEYDPPGNYVNE 179
E + Y++N+N+C AGQMCGHYTQIIW+ETLRLGCAR+ C+NGE LVICEYDPPGNYV+E
Sbjct: 121 EEGQHYHMNNNQCDAGQMCGHYTQIIWKETLRLGCARIRCLNGEFLVICEYDPPGNYVSE 180
BLAST of Lag0027114 vs. NCBI nr
Match:
XP_023005650.1 (pathogenesis-related protein 1C-like [Cucurbita maxima])
HSP 1 Score: 244.6 bits (623), Expect = 6.5e-61
Identity = 114/183 (62.30%), Postives = 137/183 (74.86%), Query Frame = 0
Query: 1 MSPPCILSA-VAAFSLLLPAVSADQAPPPPPAAANQ----NPQRRGSLAREFLQAHNKVR 60
M+P ILSA VA SL L ++A P A N RR + EFL+ HNK R
Sbjct: 1 MAPSYILSAVVAGISLSLLFLAATVETLTLPVATNALVPFLTNRRRTYREEFLEVHNKYR 60
Query: 61 STFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGHWTPSAVVESWA 120
+ +PPLTWD+NLTR+ARRWG KRA DCK+ HS+GPYGEN+FWG+L HWTPS VV+SW
Sbjct: 61 AMVNLPPLTWDRNLTRYARRWGAKRAIDCKIVHSFGPYGENMFWGRLDHWTPSKVVDSWG 120
Query: 121 GESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVICEYDPPGNYVNE 179
E + Y++N+N+C AGQMCGHYTQIIW+ETLRLGCAR+ C+NGE LVICEYDPPGNYV+E
Sbjct: 121 EEGQHYHMNNNQCDAGQMCGHYTQIIWKETLRLGCARIRCLNGEFLVICEYDPPGNYVSE 180
BLAST of Lag0027114 vs. NCBI nr
Match:
KAG6596435.1 (hypothetical protein SDJN03_09615, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027976.1 hypothetical protein SDJN02_09155, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 244.2 bits (622), Expect = 8.5e-61
Identity = 112/183 (61.20%), Postives = 137/183 (74.86%), Query Frame = 0
Query: 1 MSPPCILSAV---AAFSLLLPAVSAD--QAPPPPPAAANQNPQRRGSLAREFLQAHNKVR 60
M+P +LSAV ++ SLL A + + P A A RR + EFL+ HNK R
Sbjct: 1 MAPSHVLSAVVTASSLSLLFLAATVETLTLPVATNALAPFLTNRRRTYREEFLEMHNKYR 60
Query: 61 STFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGHWTPSAVVESWA 120
+PPLTWD+NLTR+ARRWG KRA DCK+ HS+GPYGEN+FWG+L HWTPS VVESW
Sbjct: 61 GMVNLPPLTWDRNLTRYARRWGAKRAVDCKIVHSFGPYGENMFWGRLDHWTPSKVVESWG 120
Query: 121 GESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVICEYDPPGNYVNE 179
E + Y++N+N+C AGQMCGHYTQIIW+ETLRLGCAR+ C+NGE LVICEYDPPGNYV+E
Sbjct: 121 EEGQHYHMNNNQCDAGQMCGHYTQIIWKETLRLGCARIRCLNGEFLVICEYDPPGNYVSE 180
BLAST of Lag0027114 vs. ExPASy Swiss-Prot
Match:
P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)
HSP 1 Score: 162.2 bits (409), Expect = 5.6e-39
Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 0
Query: 45 REFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGH 104
+++L AHN R+ V PLTWD + +A+ + + AADC + HS+G YGENL WG
Sbjct: 35 QDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAWGSGDF 94
Query: 105 WTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVIC 164
T + VE W E ++Y +SN CA GQ+CGHYTQ++WR ++R+GCARV C NG +V C
Sbjct: 95 LTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSC 154
Query: 165 EYDPPGNYVNEKP 178
YDPPGN + + P
Sbjct: 155 NYDPPGNVIGKSP 167
BLAST of Lag0027114 vs. ExPASy Swiss-Prot
Match:
P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 0
Query: 45 REFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGH 104
+++L AHN R+ V PLTWD + +A+ + + AADC + HS+G YGENL G
Sbjct: 35 QDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAEGSGDF 94
Query: 105 WTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVIC 164
T + VE W E ++Y+ +SN CA GQ+CGHYTQ++WR ++R+GCARV C NG +V C
Sbjct: 95 MTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSC 154
Query: 165 EYDPPGNYVNEKP 178
YDPPGNY E P
Sbjct: 155 NYDPPGNYRGESP 167
BLAST of Lag0027114 vs. ExPASy Swiss-Prot
Match:
P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37
Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 0
Query: 45 REFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGH 104
+++L AHN R+ V PLTWD + +A+ + + AADC + HS+G YGENL G
Sbjct: 35 QDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSHGQYGENLAQGSGDF 94
Query: 105 WTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVIC 164
T + VE W E ++Y+ +SN CA GQ+CGHYTQ++WR ++R+GCARV C NG +V C
Sbjct: 95 MTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSC 154
Query: 165 EYDPPGNYVNEKP 178
YDPPGN + + P
Sbjct: 155 NYDPPGNVIGQSP 167
BLAST of Lag0027114 vs. ExPASy Swiss-Prot
Match:
Q41359 (Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1)
HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0
Query: 45 REFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGP-YGENLFWGKLG 104
++++ AHN RS V P+TWD+++ FAR++ RA DC++ HS P YGENL +G
Sbjct: 33 QDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRYGENLAFGSGF 92
Query: 105 HWTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVI 164
T V+ W E YN N+N CA G++CGHYTQ++WR ++R+GCARV C NG +
Sbjct: 93 ELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFIT 152
Query: 165 CEYDPPGNYVNEKP 178
C Y PPGNY ++P
Sbjct: 153 CNYSPPGNYAGQRP 166
BLAST of Lag0027114 vs. ExPASy Swiss-Prot
Match:
P35792 (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 1.3e-35
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0
Query: 31 AAANQNPQRRGSLAREFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSY 90
AAA N + + ++++ HN RS V ++W L FA+ + ++R DCK+ HS
Sbjct: 15 AAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSG 74
Query: 91 GPYGENLFWGKLG-HWTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLG 150
GPYGEN+FWG G W + V SW E K YN SN CAAG++CGHYTQ++WR + +G
Sbjct: 75 GPYGENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIG 134
Query: 151 CARVNCVNGE-LLVICEYDPPGNYVNEKP 178
CARV C N + + C Y+P GN V +KP
Sbjct: 135 CARVVCNNNRGVFITCNYEPRGNIVGQKP 163
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0044057.1 | 7.7e-70 | 68.98 | pathogenesis-related protein 1C-like [Cucumis melo var. makuwa] | [more] |
KAE8651020.1 | 4.4e-65 | 76.19 | hypothetical protein Csa_001683 [Cucumis sativus] | [more] |
XP_022938296.1 | 5.0e-61 | 61.75 | pathogenesis-related protein 1C-like [Cucurbita moschata] | [more] |
XP_023005650.1 | 6.5e-61 | 62.30 | pathogenesis-related protein 1C-like [Cucurbita maxima] | [more] |
KAG6596435.1 | 8.5e-61 | 61.20 | hypothetical protein SDJN03_09615, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
P09042 | 5.6e-39 | 48.12 | Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3 | [more] |
P08299 | 2.8e-38 | 48.87 | Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1 | [more] |
P07053 | 1.4e-37 | 47.37 | Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | [more] |
Q41359 | 1.5e-36 | 46.27 | Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1 | [more] |
P35792 | 1.3e-35 | 44.30 | Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1 | [more] |