Lag0027114.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGCCGCCGTGCATTCTCTCCGCCGTCGCCGCCTTCTCCCTCCTCCTCCCCGCCGTCTCCGCCGACCAGGCACCGCCGCCTCCGCCCGCCGCCGCAAACCAAAATCCACAGCGACGCGGATCCTTAGCGCGCGAATTCCTTCAAGCACACAACAAAGTCCGGTCGACCTTTAAAGTTCCGCCATTAACGTGGGACAAGAATCTCACTCGATTCGCGCGGCGGTGGGGCGACAAACGCGCCGCCGATTGTAAAATGACTCATTCGTACGGTCCGTACGGCGAGAATCTGTTTTGGGGAAAATTAGGGCACTGGACGCCGTCGGCAGTGGTGGAATCGTGGGCTGGAGAGAGCAAATTCTACAATCTGAATAGCAATGAATGCGCCGCCGGCCAAATGTGCGGCCACTACACGCAGATTATTTGGAGGGAAACGCTCCGATTGGGATGTGCTAGAGTCAATTGCGTCAACGGAGAGTTGCTTGTGATTTGTGAGTACGATCCGCCGGGGAATTACGTCAATGAGAAACCGGTTTGA ATGTCGCCGCCGTGCATTCTCTCCGCCGTCGCCGCCTTCTCCCTCCTCCTCCCCGCCGTCTCCGCCGACCAGGCACCGCCGCCTCCGCCCGCCGCCGCAAACCAAAATCCACAGCGACGCGGATCCTTAGCGCGCGAATTCCTTCAAGCACACAACAAAGTCCGGTCGACCTTTAAAGTTCCGCCATTAACGTGGGACAAGAATCTCACTCGATTCGCGCGGCGGTGGGGCGACAAACGCGCCGCCGATTGTAAAATGACTCATTCGTACGGTCCGTACGGCGAGAATCTGTTTTGGGGAAAATTAGGGCACTGGACGCCGTCGGCAGTGGTGGAATCGTGGGCTGGAGAGAGCAAATTCTACAATCTGAATAGCAATGAATGCGCCGCCGGCCAAATGTGCGGCCACTACACGCAGATTATTTGGAGGGAAACGCTCCGATTGGGATGTGCTAGAGTCAATTGCGTCAACGGAGAGTTGCTTGTGATTTGTGAGTACGATCCGCCGGGGAATTACGTCAATGAGAAACCGGTTTGA ATGTCGCCGCCGTGCATTCTCTCCGCCGTCGCCGCCTTCTCCCTCCTCCTCCCCGCCGTCTCCGCCGACCAGGCACCGCCGCCTCCGCCCGCCGCCGCAAACCAAAATCCACAGCGACGCGGATCCTTAGCGCGCGAATTCCTTCAAGCACACAACAAAGTCCGGTCGACCTTTAAAGTTCCGCCATTAACGTGGGACAAGAATCTCACTCGATTCGCGCGGCGGTGGGGCGACAAACGCGCCGCCGATTGTAAAATGACTCATTCGTACGGTCCGTACGGCGAGAATCTGTTTTGGGGAAAATTAGGGCACTGGACGCCGTCGGCAGTGGTGGAATCGTGGGCTGGAGAGAGCAAATTCTACAATCTGAATAGCAATGAATGCGCCGCCGGCCAAATGTGCGGCCACTACACGCAGATTATTTGGAGGGAAACGCTCCGATTGGGATGTGCTAGAGTCAATTGCGTCAACGGAGAGTTGCTTGTGATTTGTGAGTACGATCCGCCGGGGAATTACGTCAATGAGAAACCGGTTTGA MSPPCILSAVAAFSLLLPAVSADQAPPPPPAAANQNPQRRGSLAREFLQAHNKVRSTFKVPPLTWDKNLTRFARRWGDKRAADCKMTHSYGPYGENLFWGKLGHWTPSAVVESWAGESKFYNLNSNECAAGQMCGHYTQIIWRETLRLGCARVNCVNGELLVICEYDPPGNYVNEKPV Homology
BLAST of Lag0027114.1 vs. NCBI nr
Match: KAA0044057.1 (pathogenesis-related protein 1C-like [Cucumis melo var. makuwa]) HSP 1 Score: 274.2 bits (700), Expect = 7.7e-70 Identity = 129/187 (68.98%), Postives = 146/187 (78.07%), Query Frame = 0
BLAST of Lag0027114.1 vs. NCBI nr
Match: KAE8651020.1 (hypothetical protein Csa_001683 [Cucumis sativus]) HSP 1 Score: 258.5 bits (659), Expect = 4.4e-65 Identity = 112/147 (76.19%), Postives = 126/147 (85.71%), Query Frame = 0
BLAST of Lag0027114.1 vs. NCBI nr
Match: XP_022938296.1 (pathogenesis-related protein 1C-like [Cucurbita moschata]) HSP 1 Score: 245.0 bits (624), Expect = 5.0e-61 Identity = 113/183 (61.75%), Postives = 136/183 (74.32%), Query Frame = 0
BLAST of Lag0027114.1 vs. NCBI nr
Match: XP_023005650.1 (pathogenesis-related protein 1C-like [Cucurbita maxima]) HSP 1 Score: 244.6 bits (623), Expect = 6.5e-61 Identity = 114/183 (62.30%), Postives = 137/183 (74.86%), Query Frame = 0
BLAST of Lag0027114.1 vs. NCBI nr
Match: KAG6596435.1 (hypothetical protein SDJN03_09615, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027976.1 hypothetical protein SDJN02_09155, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 244.2 bits (622), Expect = 8.5e-61 Identity = 112/183 (61.20%), Postives = 137/183 (74.86%), Query Frame = 0
BLAST of Lag0027114.1 vs. ExPASy Swiss-Prot
Match: P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3) HSP 1 Score: 162.2 bits (409), Expect = 5.6e-39 Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 0
BLAST of Lag0027114.1 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38 Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 0
BLAST of Lag0027114.1 vs. ExPASy Swiss-Prot
Match: P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37 Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 0
BLAST of Lag0027114.1 vs. ExPASy Swiss-Prot
Match: Q41359 (Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36 Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0
BLAST of Lag0027114.1 vs. ExPASy Swiss-Prot
Match: P35792 (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.3e-35 Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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