Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAATTTGCCAATGATACCATGATCTTTTGCCCAAATGAGGAGGAGATTATGGACAAATGGTGGGAGATTTTGAATTTGTTCTTAGAAGGGACTAGATTGTCCATTAACCGTGCCAAAACCTCGACCATTTGCATCAACATGAATGTGGAAAAGATCAAAGATAGGGAGGACAAAATGGGCTGTAAGGTCGAGAATTTCCCAATTAATTACCTTGGATTTCCCTTGGTAGGAAGTCATCATAGGATTGCTCTCTGAGATCCTTTGTTGGATAGATTCAGAGTCAAATTGGATGTGTGGAGACATTTCCTCTTATCTAAGGGAGGGAAAATTACTTTGGCACCATCCATTCTCAATAGCCTTCCCATTTATCACTTTTCTTTGCTTAAAGCCCCAAAGGCAGTGATTCAAAAGATGGAGAAAATCATTAGAGATTTTGTTGGTGTTGGGGGTCCTATAAACCGGGCAGCAACCTTGTGAAATGGGAGTGGATAGCTTTGCCAACCTATCATGGAGGCTTAGGGGTGGGTTCTTTAGCCCAACGTAATACGACCCTCCTAACTATGGAGATTTTTCCTATGGAGGAGGGTGATTGCGAGCATCTATGGTGTCAAGGCCTTAGGTTGGAAGGCTGAGATTTCGACCAAAAAAAGAGGCAAAAAGTTTTGGCCTGACAGAAACTATTCCCAATTTCACAAATTTACTAAATTTCAGGTTAGTTGTGGGAAGAAAATTAGGTTTTGGGAAGACACTTATTGTGATTCTTGGTCCCTTCAAATAGTTTTCCCTGATTTATACATGATATCTCAGAAGAAGAAGGCTTCAATTTCAAATTGTTGGGACTCTAATTCTCAGACTTGGGACCTCAAATTACGCAGGGGCCTTTTTGATCGCAAAACAAGCAATTGGGTGGCTTTAGTTGAGAAATTGAGTGAGGTGCATTTGGGTAATGGTGTTAATAAAAATTATTTGGATCTTAGAAGGCTCGGACTGTTATACCACCAAATCCATGTTCCAATGAAATGTTGGGAGATCTTCTAAGATTAACATGTCTACTACCGATTTGATTTTGAAGTACAAATGTCCTAAAAAGGTGAAGATTTTTCTCTGGTCCGTGGCTTACCAGAGTTTGAACACGGATGACTAGCTGCAAAGAAAGTTTAAGGGTTGGACCTTATCCCCTTCAAGTTGTAGACTGTGTATAAAAGAGAGAGAGGACATACCATATCTTTCTTCATTGTGGCTTTGCTAGAAAGGCTTGAGATTTCATTGCAAATTTGTTGGGTATATCCTTTTGATTGCTGAGAAGAGTAGAAGATTGGCTCTACGAGGGCCTAAAAGCTTGGAATATGAAGAAGGCTAAAGTTATTGTTGGTTGTGCTTTTAGGGTGACTATGTGGCTTTTGTGGAAGGAAAGGAATGTGAGGACCTTCGAAGATAAATCTACTTCTTTTGATATTTTTTTTAATATTGTACAAAATACGATCTCTTGGTGGGTTTCTTTACATAGGAAGTTCTTTTGTAATTACAGTCTACTCATGATTATTAACGATTGGCAAGCTCTTTTGAGATAGTTTTTGGAAGGGGTGACCTCCATCCCGACCCCTAGGCTATTTTCTCTTTTTGTGGAATATATCCCTCTTTGATGTTTCTTATCAACAAAAATATTTCTTTAATTTCTTTAATTGATTTCCAAAAAATATTTTTGGAATTTGAATTTATTCTTTTTAAATTAGGAGATAAATCCTTATTTATCCTTTTCTTTTTAAAAAAGGGAAATAATCTTTTAGGATTTTAATCAGGGTTCTTTTGAAAAGATCTTTTCTTTAGCCCTAATTATTTTTATACTTTTAGTCAAAAAAAAGAGAGAAAAGAAGTTGTTTTGCACTTCCCTTCCTAGAGAAAAAGCAGTAAGTTTTCTTCCCTTTTGTTCTTGATGATTTTCTTTCCTTTTCTTTCTTGATTTATTGAATCTTTCATGAAAAGTTTTTAGTCTGAATTTTTATTTGTCCTCTTCTTGATTGGATTGGGATGAAATTGGTTTTCAAACCTTTTGTCCACTAATGAATATCCCGATGGATGTTTAAGACAGGTATTAGCATAAGTAACCAAAGGAAATCATCAGTCTACAAATACAAAGGACTCAAATGCAATGTTTTAAAAGGCGAAAGGCAGCCTCGAGGCGGTGTGAGACGTAAGTCTCAATTTTAATTAAAAATATTACACAAATCCTAAATTTGTGTGAACAAGTAATGCTAAACATAATACTTATATCGATTGTAAAAGGGAGGAAAAAGAGAGAGAGAGACATAATATACTTATATAAAAGTATAAAAAAGTCACCCCTTGCTTCTTGAACAAAAATTAAGTATATCTTTAACATCACTATTATTTTCACTTATAGGATTGACTTATTCTATAAATTTTAATTTTCAATGTTTTTAAAGCCTAAGTGGTAAGAGTAGTAATATTTCAAATTGTTACAACTCAAACCTTTATATTTTTAAAGAATGGGGAAATTAATACTATTCTTCTAATCATTATGAGGCATAGAGACTTTAAGCCTCAGTGTTTTTTTATAACGGAGTAAGCCTCTCCTGCAAGAGGCGTACGCCTCTTATGGTCCAAAGAAGGCGCAAGTTTCGAGGCTAAAAGTTAGAGTTTTGCCTCGAGGCGTAAGCCTAGATAGCCTTTTTAAAAATTGCTCAAATGTACAAACTCTTCTTAAGAAATTGGCTGATCTTGACCCCAGGTAACTTCGTAACAAGCTATCATGGATATCCAACACTGAATTGACCTTATATCCAGAGCGTCATACTTTAAGGGCCAAGACATTGCAAGATGAGTCCCAAGGAATGCCAAATTACTATTTCCTATTTCACCGTATTCAGTGGCAGTCTAGGGCATTTTGGCATGGCTGAAACAAGACTTATGAAATAATACATTCTTAGTTCCGGTGGAAAAATAGAAAATTGGAAAACAATATAATGTTCAGGATGCCCTATTTGCCAAATTTCCAATGGTGAATAAGACTAACAAAACATTGTTCTATGCCCATTTATCAATACTTGAAAGCATTTGAAAATACCTCACGACTTCATGCTAATCCTTCAACAATTAATTTGATTCTACCACCTACTCCAGCTAAGGTTAATTCGAAAGATGAAACAGAAGCATTACATTTAAATCCAAAAGACACTTCAAGGCAATAGAAAATCTTAAAAAGCTATCACATGCTATCATTATAAATGGTCGGCCTCGAGTTAAAATTACTGCTACTCGAGGGCTTCGTCAAGGTGATCATCTTTCACCTTTTCTCTTCATCATGATTATGGACCGTCTTAGTCGATTGCTATCCAAAGCAGAAAACAATGGTAAAATAAAGGGTTTTCATGTGGGTTGTGGTGATATTTTTATCAACCATATACAGTTTGCAGATGACACAATCTTATTTTCTAATTTTGAAGATGGTTCTTTCCTTCAGTGTTTGCTTTCAGTGGCGGGTGCATTTGAAAAAATGTCGGGACAGAATATCAATCTTCAAAAATAAAAAATAAATCATTGGTACAAATGTGGAGCATGACACCATCCAAGATCTTGCAATCAAATATGGTTGTAAAATAGGCGTTTGGCCAAATTCTTATTTGGGGTTCCCTTAAATGTCTCCTAGATGGAGCACGCCTTGGATTGCACTCAATGAGAGATAAGAACAGGGCTCTCCTTGCAAAATGGGTTTAGAGGTTCAACCATGAAAAGATAGCACTATGGAGGAAACTCATTAATGATAAATATGGATCCTCCACACACTTGAATTGGGCTTCTCTTGCTACAAAAGGACCATGGAAAGCTATTGTCAAGCATCAAGAACTTGTTACCAGTAGAATTTGTCACCAAGTGGGTAATGGAGAATCAACTCGTTTTTGGCATGACCCATGGCTAACAACCCCCGCTAGCCAACTGTTTTCCTCTTTTATATAGGTTAACTTGAAGCAAGAACGCCACGGTGAGAGAAGCATGGAATTCTAATTGCTCATTTTGGAATCTCCAATTTGGTAGACATTTGAAGGACGATGAAGCTTCTGAATGGATGGACTTAAATGTTATCCTTGATCCCATTGTTCTAGCTCAAACAGCAGACTCGTGGACATGGCCCCTTAACGCCAACAGTCTCTTCTCCACAAAGTCCTTAATGGCCGATATGGGTAACACCACCATCTTCTTGGAGAATCATCTTGTTCAGGCCATTTGGAAGGATATATACCCCAAGAAGATCAAATTCTTCCTTTGGGAATTGGCTCATAGAGCAATCAGCACCAAAGATAATTTACAGAAACGTATGCCTACATTAGCTCTATCACCAAGTTGGTGTACATTATGCAAGCAAAGCGATGAAACTCTTGATCACCTCTTCATCCATTGTCCATATGCCTGGGAATCTGGACTAAAATTCTTTCTGCCTTTGGATGGAATTTGCCTCTCACGGGGGACATTATCAGCACTCCCCACTCCACCTTGCTAG
mRNA sequence
ATGCTCCAATTTGCCAATGATACCATGATCTTTTGCCCAAATGAGGAGGAGATTATGGACAAATGGTGGGAGATTTTGAATTTGTTCTTAGAAGGGACTAGATTGTCCATTAACCGTGCCAAAACCTCGACCATTTGCATCAACATGAATGTGGAAAAGATCAAAGATAGGGAGGACAAAATGGGCTGTAAGGTCGAGAATTTCCCAATTAATTACCTTGGATTTCCCTTGGTTAGTTGTGGGAAGAAAATTAGGTTTTGGGAAGACACTTATTGTGATTCTTGGTCCCTTCAAATAGTTTTCCCTGATTTATACATGATATCTCAGAAGAAGAAGGCTTCAATTTCAAATTGTTGGGACTCTAATTCTCAGACTTGGGACCTCAAATTACGCAGGGGCCTTTTTGATCGCAAAACAAGCAATTGGGTGGCTTTAGTTGAGAAATTGAGTGAGGGTGACTATGTGGCTTTTGTGGAAGGAAAGGAATGTATTAGCATAAGTAACCAAAGGAAATCATCAGTCTACAAATACAAAGGACTCAAATGCAATGTTTTAAAAGGCGAAAGGCAGCCTCGAGGCGGTGTGAGACAGGCGTACGCCTCTTATGGTCCAAAGAAGGCGCAAGTTTCGAGGCTAAAAGTTAGAGTTTTGCCTCGAGGCGTAAGCCTAGATAGCCTTTTTAAAAATTGCTCAAATGTACAAACTCTTCTTAAGAAATTGGCTGATCTTGACCCCAGACATTTGAAGGACGATGAAGCTTCTGAATGGATGGACTTAAATGTTATCCTTGATCCCATTGTTCTAGCTCAAACAGCAGACTCGTGGACATGGCCCCTTAACGCCAACAGTCTCTTCTCCACAAAGTCCTTAATGGCCGATATGGGTAACACCACCATCTTCTTGGAGAATCATCTTGTTCAGGCCATTTGGAAGGATATATACCCCAAGAAGATCAAATTCTTCCTTTGGGAATTGGCTCATAGAGCAATCAGCACCAAAGATAATTTACAGAAACGTATGCCTACATTAGCTCTATCACCAAGTTGGTGTACATTATGCAAGCAAAGCGATGAAACTCTTGATCACCTCTTCATCCATTGTCCATATGCCTGGGAATCTGGACTAAAATTCTTTCTGCCTTTGGATGGAATTTGCCTCTCACGGGGGACATTATCAGCACTCCCCACTCCACCTTGCTAG
Coding sequence (CDS)
ATGCTCCAATTTGCCAATGATACCATGATCTTTTGCCCAAATGAGGAGGAGATTATGGACAAATGGTGGGAGATTTTGAATTTGTTCTTAGAAGGGACTAGATTGTCCATTAACCGTGCCAAAACCTCGACCATTTGCATCAACATGAATGTGGAAAAGATCAAAGATAGGGAGGACAAAATGGGCTGTAAGGTCGAGAATTTCCCAATTAATTACCTTGGATTTCCCTTGGTTAGTTGTGGGAAGAAAATTAGGTTTTGGGAAGACACTTATTGTGATTCTTGGTCCCTTCAAATAGTTTTCCCTGATTTATACATGATATCTCAGAAGAAGAAGGCTTCAATTTCAAATTGTTGGGACTCTAATTCTCAGACTTGGGACCTCAAATTACGCAGGGGCCTTTTTGATCGCAAAACAAGCAATTGGGTGGCTTTAGTTGAGAAATTGAGTGAGGGTGACTATGTGGCTTTTGTGGAAGGAAAGGAATGTATTAGCATAAGTAACCAAAGGAAATCATCAGTCTACAAATACAAAGGACTCAAATGCAATGTTTTAAAAGGCGAAAGGCAGCCTCGAGGCGGTGTGAGACAGGCGTACGCCTCTTATGGTCCAAAGAAGGCGCAAGTTTCGAGGCTAAAAGTTAGAGTTTTGCCTCGAGGCGTAAGCCTAGATAGCCTTTTTAAAAATTGCTCAAATGTACAAACTCTTCTTAAGAAATTGGCTGATCTTGACCCCAGACATTTGAAGGACGATGAAGCTTCTGAATGGATGGACTTAAATGTTATCCTTGATCCCATTGTTCTAGCTCAAACAGCAGACTCGTGGACATGGCCCCTTAACGCCAACAGTCTCTTCTCCACAAAGTCCTTAATGGCCGATATGGGTAACACCACCATCTTCTTGGAGAATCATCTTGTTCAGGCCATTTGGAAGGATATATACCCCAAGAAGATCAAATTCTTCCTTTGGGAATTGGCTCATAGAGCAATCAGCACCAAAGATAATTTACAGAAACGTATGCCTACATTAGCTCTATCACCAAGTTGGTGTACATTATGCAAGCAAAGCGATGAAACTCTTGATCACCTCTTCATCCATTGTCCATATGCCTGGGAATCTGGACTAAAATTCTTTCTGCCTTTGGATGGAATTTGCCTCTCACGGGGGACATTATCAGCACTCCCCACTCCACCTTGCTAG
Protein sequence
MLQFANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGCKVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNSQTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCNVLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADLDPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLENHLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETLDHLFIHCPYAWESGLKFFLPLDGICLSRGTLSALPTPPC
Homology
BLAST of Lag0025498 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.7 bits (335), Expect = 3.6e-27
Identity = 114/433 (26.33%), Postives = 183/433 (42.26%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF ++E+ + IL+LF + L+IN +K++ IN+ ++ D G
Sbjct: 411 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 470
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
P YLG PL FW++ SW SL
Sbjct: 471 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 530
Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
I VF I+QK +A N W+ S ++ L R G+ ++
Sbjct: 531 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHST 590
Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
N+ L + L + F+ KE IS +Q K + +G + +
Sbjct: 591 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 650
Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
+ Y + G K + + P +++ LF +N + +K L +
Sbjct: 651 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDW 710
Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
R L+D E + W ++ L + + W LN+N++F T S+ D+ +
Sbjct: 711 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 770
Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
N L + +WK +PKK KFF+W L H I+T D LQKR+P LSP+WC +C +S
Sbjct: 771 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 830
BLAST of Lag0025498 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.7 bits (335), Expect = 3.6e-27
Identity = 114/433 (26.33%), Postives = 182/433 (42.03%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF ++E+ + IL+LF + L+IN +K++ IN+ ++ D G
Sbjct: 505 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 564
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
P YLG PL FW++ SW SL
Sbjct: 565 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 624
Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
I VF I+QK +A N W+ S ++ L R G+ ++
Sbjct: 625 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHST 684
Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
N+ L + L + F+ KE IS +Q K + +G + +
Sbjct: 685 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 744
Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
+ Y + G K + + P + + LF +N + +K L +
Sbjct: 745 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDW 804
Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
R L+D E + W ++ L + + W LN+N++F T S+ D+ +
Sbjct: 805 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 864
Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
N L + +WK +PKK KFF+W L H I+T D LQKR+P LSP+WC +C +S
Sbjct: 865 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 924
BLAST of Lag0025498 vs. NCBI nr
Match:
KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.3 bits (334), Expect = 4.7e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF + ++ + IL+LF + L+IN +K++ IN+ + K D G
Sbjct: 76 FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 135
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
+ P +YLG PL K S SN WD+
Sbjct: 136 SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 195
Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
Q +K S+W +LS+G + + N S+ Y+ K N
Sbjct: 196 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 255
Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
+ + + P V RL + S+ + SN L
Sbjct: 256 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 315
Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
R L+D E + W ++ L + + W LN+N++F T S+ + + N
Sbjct: 316 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 375
Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
+L + +WK +PKK KFF+W L H I+T D LQKR+P ALSP+WC +C +S E +
Sbjct: 376 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 383
Query: 364 DHLFIHCPYA 371
+HLFIHCPY+
Sbjct: 436 NHLFIHCPYS 383
BLAST of Lag0025498 vs. NCBI nr
Match:
TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.3 bits (334), Expect = 4.7e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF + ++ + IL+LF + L+IN +K++ IN+ + K D G
Sbjct: 33 FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 92
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
+ P +YLG PL K S SN WD+
Sbjct: 93 SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 152
Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
Q +K S+W +LS+G + + N S+ Y+ K N
Sbjct: 153 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 212
Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
+ + + P V RL + S+ + SN L
Sbjct: 213 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 272
Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
R L+D E + W ++ L + + W LN+N++F T S+ + + N
Sbjct: 273 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 332
Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
+L + +WK +PKK KFF+W L H I+T D LQKR+P ALSP+WC +C +S E +
Sbjct: 333 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 340
Query: 364 DHLFIHCPYA 371
+HLFIHCPY+
Sbjct: 393 NHLFIHCPYS 340
BLAST of Lag0025498 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.8 bits (325), Expect = 5.2e-26
Identity = 116/436 (26.61%), Postives = 181/436 (41.51%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF + ++ + IL+LF + L+IN +K++ IN+ ++ K D G
Sbjct: 613 FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGI 672
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
+ P +YLG PL FW++ +W SL
Sbjct: 673 SKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLP 732
Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
I VF I+QK +AS N W+ S ++ L R G+ ++
Sbjct: 733 IYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNST 792
Query: 184 N--------WVALVEK--LSEGDYVAFVEGKECISISNQRKSS-------------VYKY 243
N W L EK L + ++ + ++ S + K S + Y
Sbjct: 793 NFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFY 852
Query: 244 KGLKCNVLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLL 303
K + V GE + P V RL + S+ + SN L
Sbjct: 853 KNISWKVNDGE--DISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLH 912
Query: 304 KKLADLDPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNT 363
R L+D E + W ++ L + + W LN+N++F T S+ +
Sbjct: 913 IN------RPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEA 972
Query: 364 TIFLEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCK 371
I N +L + +WK +PKK KFF+W L H I+T D LQKR+P LSP+WC +C
Sbjct: 973 PISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCN 1032
BLAST of Lag0025498 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 114/433 (26.33%), Postives = 182/433 (42.03%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF ++E+ + IL+LF + L+IN +K++ IN+ ++ D G
Sbjct: 505 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 564
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
P YLG PL FW++ SW SL
Sbjct: 565 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 624
Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
I VF I+QK +A N W+ S ++ L R G+ ++
Sbjct: 625 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHST 684
Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
N+ L + L + F+ KE IS +Q K + +G + +
Sbjct: 685 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 744
Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
+ Y + G K + + P + + LF +N + +K L +
Sbjct: 745 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDW 804
Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
R L+D E + W ++ L + + W LN+N++F T S+ D+ +
Sbjct: 805 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 864
Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
N L + +WK +PKK KFF+W L H I+T D LQKR+P LSP+WC +C +S
Sbjct: 865 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 924
BLAST of Lag0025498 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 114/433 (26.33%), Postives = 183/433 (42.26%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF ++E+ + IL+LF + L+IN +K++ IN+ ++ D G
Sbjct: 411 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 470
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
P YLG PL FW++ SW SL
Sbjct: 471 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 530
Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
I VF I+QK +A N W+ S ++ L R G+ ++
Sbjct: 531 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHST 590
Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
N+ L + L + F+ KE IS +Q K + +G + +
Sbjct: 591 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 650
Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
+ Y + G K + + P +++ LF +N + +K L +
Sbjct: 651 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDW 710
Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
R L+D E + W ++ L + + W LN+N++F T S+ D+ +
Sbjct: 711 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 770
Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
N L + +WK +PKK KFF+W L H I+T D LQKR+P LSP+WC +C +S
Sbjct: 771 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 830
BLAST of Lag0025498 vs. ExPASy TrEMBL
Match:
A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 2.3e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF + ++ + IL+LF + L+IN +K++ IN+ + K D G
Sbjct: 76 FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 135
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
+ P +YLG PL K S SN WD+
Sbjct: 136 SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 195
Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
Q +K S+W +LS+G + + N S+ Y+ K N
Sbjct: 196 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 255
Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
+ + + P V RL + S+ + SN L
Sbjct: 256 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 315
Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
R L+D E + W ++ L + + W LN+N++F T S+ + + N
Sbjct: 316 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 375
Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
+L + +WK +PKK KFF+W L H I+T D LQKR+P ALSP+WC +C +S E +
Sbjct: 376 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 383
Query: 364 DHLFIHCPYA 371
+HLFIHCPY+
Sbjct: 436 NHLFIHCPYS 383
BLAST of Lag0025498 vs. ExPASy TrEMBL
Match:
A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 2.3e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF + ++ + IL+LF + L+IN +K++ IN+ + K D G
Sbjct: 33 FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 92
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
+ P +YLG PL K S SN WD+
Sbjct: 93 SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 152
Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
Q +K S+W +LS+G + + N S+ Y+ K N
Sbjct: 153 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 212
Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
+ + + P V RL + S+ + SN L
Sbjct: 213 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 272
Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
R L+D E + W ++ L + + W LN+N++F T S+ + + N
Sbjct: 273 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 332
Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
+L + +WK +PKK KFF+W L H I+T D LQKR+P ALSP+WC +C +S E +
Sbjct: 333 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 340
Query: 364 DHLFIHCPYA 371
+HLFIHCPY+
Sbjct: 393 NHLFIHCPYS 340
BLAST of Lag0025498 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 129.8 bits (325), Expect = 2.5e-26
Identity = 116/436 (26.61%), Postives = 181/436 (41.51%), Query Frame = 0
Query: 4 FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
FA+D +IF + ++ + IL+LF + L+IN +K++ IN+ ++ K D G
Sbjct: 613 FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGI 672
Query: 64 KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
+ P +YLG PL FW++ +W SL
Sbjct: 673 SKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLP 732
Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
I VF I+QK +AS N W+ S ++ L R G+ ++
Sbjct: 733 IYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNST 792
Query: 184 N--------WVALVEK--LSEGDYVAFVEGKECISISNQRKSS-------------VYKY 243
N W L EK L + ++ + ++ S + K S + Y
Sbjct: 793 NFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFY 852
Query: 244 KGLKCNVLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLL 303
K + V GE + P V RL + S+ + SN L
Sbjct: 853 KNISWKVNDGE--DISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLH 912
Query: 304 KKLADLDPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNT 363
R L+D E + W ++ L + + W LN+N++F T S+ +
Sbjct: 913 IN------RPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEA 972
Query: 364 TIFLEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCK 371
I N +L + +WK +PKK KFF+W L H I+T D LQKR+P LSP+WC +C
Sbjct: 973 PISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCN 1032
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0044556.1 | 3.6e-27 | 26.33 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 3.6e-27 | 26.33 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0044451.1 | 4.7e-27 | 27.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK29578.1 | 4.7e-27 | 27.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 5.2e-26 | 26.61 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TIB8 | 1.8e-27 | 26.33 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 1.8e-27 | 26.33 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TSA7 | 2.3e-27 | 27.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3E1E3 | 2.3e-27 | 27.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 2.5e-26 | 26.61 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |