Lag0025498 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025498
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr10: 13923218 .. 13927739 (-)
RNA-Seq ExpressionLag0025498
SyntenyLag0025498
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAATTTGCCAATGATACCATGATCTTTTGCCCAAATGAGGAGGAGATTATGGACAAATGGTGGGAGATTTTGAATTTGTTCTTAGAAGGGACTAGATTGTCCATTAACCGTGCCAAAACCTCGACCATTTGCATCAACATGAATGTGGAAAAGATCAAAGATAGGGAGGACAAAATGGGCTGTAAGGTCGAGAATTTCCCAATTAATTACCTTGGATTTCCCTTGGTAGGAAGTCATCATAGGATTGCTCTCTGAGATCCTTTGTTGGATAGATTCAGAGTCAAATTGGATGTGTGGAGACATTTCCTCTTATCTAAGGGAGGGAAAATTACTTTGGCACCATCCATTCTCAATAGCCTTCCCATTTATCACTTTTCTTTGCTTAAAGCCCCAAAGGCAGTGATTCAAAAGATGGAGAAAATCATTAGAGATTTTGTTGGTGTTGGGGGTCCTATAAACCGGGCAGCAACCTTGTGAAATGGGAGTGGATAGCTTTGCCAACCTATCATGGAGGCTTAGGGGTGGGTTCTTTAGCCCAACGTAATACGACCCTCCTAACTATGGAGATTTTTCCTATGGAGGAGGGTGATTGCGAGCATCTATGGTGTCAAGGCCTTAGGTTGGAAGGCTGAGATTTCGACCAAAAAAAGAGGCAAAAAGTTTTGGCCTGACAGAAACTATTCCCAATTTCACAAATTTACTAAATTTCAGGTTAGTTGTGGGAAGAAAATTAGGTTTTGGGAAGACACTTATTGTGATTCTTGGTCCCTTCAAATAGTTTTCCCTGATTTATACATGATATCTCAGAAGAAGAAGGCTTCAATTTCAAATTGTTGGGACTCTAATTCTCAGACTTGGGACCTCAAATTACGCAGGGGCCTTTTTGATCGCAAAACAAGCAATTGGGTGGCTTTAGTTGAGAAATTGAGTGAGGTGCATTTGGGTAATGGTGTTAATAAAAATTATTTGGATCTTAGAAGGCTCGGACTGTTATACCACCAAATCCATGTTCCAATGAAATGTTGGGAGATCTTCTAAGATTAACATGTCTACTACCGATTTGATTTTGAAGTACAAATGTCCTAAAAAGGTGAAGATTTTTCTCTGGTCCGTGGCTTACCAGAGTTTGAACACGGATGACTAGCTGCAAAGAAAGTTTAAGGGTTGGACCTTATCCCCTTCAAGTTGTAGACTGTGTATAAAAGAGAGAGAGGACATACCATATCTTTCTTCATTGTGGCTTTGCTAGAAAGGCTTGAGATTTCATTGCAAATTTGTTGGGTATATCCTTTTGATTGCTGAGAAGAGTAGAAGATTGGCTCTACGAGGGCCTAAAAGCTTGGAATATGAAGAAGGCTAAAGTTATTGTTGGTTGTGCTTTTAGGGTGACTATGTGGCTTTTGTGGAAGGAAAGGAATGTGAGGACCTTCGAAGATAAATCTACTTCTTTTGATATTTTTTTTAATATTGTACAAAATACGATCTCTTGGTGGGTTTCTTTACATAGGAAGTTCTTTTGTAATTACAGTCTACTCATGATTATTAACGATTGGCAAGCTCTTTTGAGATAGTTTTTGGAAGGGGTGACCTCCATCCCGACCCCTAGGCTATTTTCTCTTTTTGTGGAATATATCCCTCTTTGATGTTTCTTATCAACAAAAATATTTCTTTAATTTCTTTAATTGATTTCCAAAAAATATTTTTGGAATTTGAATTTATTCTTTTTAAATTAGGAGATAAATCCTTATTTATCCTTTTCTTTTTAAAAAAGGGAAATAATCTTTTAGGATTTTAATCAGGGTTCTTTTGAAAAGATCTTTTCTTTAGCCCTAATTATTTTTATACTTTTAGTCAAAAAAAAGAGAGAAAAGAAGTTGTTTTGCACTTCCCTTCCTAGAGAAAAAGCAGTAAGTTTTCTTCCCTTTTGTTCTTGATGATTTTCTTTCCTTTTCTTTCTTGATTTATTGAATCTTTCATGAAAAGTTTTTAGTCTGAATTTTTATTTGTCCTCTTCTTGATTGGATTGGGATGAAATTGGTTTTCAAACCTTTTGTCCACTAATGAATATCCCGATGGATGTTTAAGACAGGTATTAGCATAAGTAACCAAAGGAAATCATCAGTCTACAAATACAAAGGACTCAAATGCAATGTTTTAAAAGGCGAAAGGCAGCCTCGAGGCGGTGTGAGACGTAAGTCTCAATTTTAATTAAAAATATTACACAAATCCTAAATTTGTGTGAACAAGTAATGCTAAACATAATACTTATATCGATTGTAAAAGGGAGGAAAAAGAGAGAGAGAGACATAATATACTTATATAAAAGTATAAAAAAGTCACCCCTTGCTTCTTGAACAAAAATTAAGTATATCTTTAACATCACTATTATTTTCACTTATAGGATTGACTTATTCTATAAATTTTAATTTTCAATGTTTTTAAAGCCTAAGTGGTAAGAGTAGTAATATTTCAAATTGTTACAACTCAAACCTTTATATTTTTAAAGAATGGGGAAATTAATACTATTCTTCTAATCATTATGAGGCATAGAGACTTTAAGCCTCAGTGTTTTTTTATAACGGAGTAAGCCTCTCCTGCAAGAGGCGTACGCCTCTTATGGTCCAAAGAAGGCGCAAGTTTCGAGGCTAAAAGTTAGAGTTTTGCCTCGAGGCGTAAGCCTAGATAGCCTTTTTAAAAATTGCTCAAATGTACAAACTCTTCTTAAGAAATTGGCTGATCTTGACCCCAGGTAACTTCGTAACAAGCTATCATGGATATCCAACACTGAATTGACCTTATATCCAGAGCGTCATACTTTAAGGGCCAAGACATTGCAAGATGAGTCCCAAGGAATGCCAAATTACTATTTCCTATTTCACCGTATTCAGTGGCAGTCTAGGGCATTTTGGCATGGCTGAAACAAGACTTATGAAATAATACATTCTTAGTTCCGGTGGAAAAATAGAAAATTGGAAAACAATATAATGTTCAGGATGCCCTATTTGCCAAATTTCCAATGGTGAATAAGACTAACAAAACATTGTTCTATGCCCATTTATCAATACTTGAAAGCATTTGAAAATACCTCACGACTTCATGCTAATCCTTCAACAATTAATTTGATTCTACCACCTACTCCAGCTAAGGTTAATTCGAAAGATGAAACAGAAGCATTACATTTAAATCCAAAAGACACTTCAAGGCAATAGAAAATCTTAAAAAGCTATCACATGCTATCATTATAAATGGTCGGCCTCGAGTTAAAATTACTGCTACTCGAGGGCTTCGTCAAGGTGATCATCTTTCACCTTTTCTCTTCATCATGATTATGGACCGTCTTAGTCGATTGCTATCCAAAGCAGAAAACAATGGTAAAATAAAGGGTTTTCATGTGGGTTGTGGTGATATTTTTATCAACCATATACAGTTTGCAGATGACACAATCTTATTTTCTAATTTTGAAGATGGTTCTTTCCTTCAGTGTTTGCTTTCAGTGGCGGGTGCATTTGAAAAAATGTCGGGACAGAATATCAATCTTCAAAAATAAAAAATAAATCATTGGTACAAATGTGGAGCATGACACCATCCAAGATCTTGCAATCAAATATGGTTGTAAAATAGGCGTTTGGCCAAATTCTTATTTGGGGTTCCCTTAAATGTCTCCTAGATGGAGCACGCCTTGGATTGCACTCAATGAGAGATAAGAACAGGGCTCTCCTTGCAAAATGGGTTTAGAGGTTCAACCATGAAAAGATAGCACTATGGAGGAAACTCATTAATGATAAATATGGATCCTCCACACACTTGAATTGGGCTTCTCTTGCTACAAAAGGACCATGGAAAGCTATTGTCAAGCATCAAGAACTTGTTACCAGTAGAATTTGTCACCAAGTGGGTAATGGAGAATCAACTCGTTTTTGGCATGACCCATGGCTAACAACCCCCGCTAGCCAACTGTTTTCCTCTTTTATATAGGTTAACTTGAAGCAAGAACGCCACGGTGAGAGAAGCATGGAATTCTAATTGCTCATTTTGGAATCTCCAATTTGGTAGACATTTGAAGGACGATGAAGCTTCTGAATGGATGGACTTAAATGTTATCCTTGATCCCATTGTTCTAGCTCAAACAGCAGACTCGTGGACATGGCCCCTTAACGCCAACAGTCTCTTCTCCACAAAGTCCTTAATGGCCGATATGGGTAACACCACCATCTTCTTGGAGAATCATCTTGTTCAGGCCATTTGGAAGGATATATACCCCAAGAAGATCAAATTCTTCCTTTGGGAATTGGCTCATAGAGCAATCAGCACCAAAGATAATTTACAGAAACGTATGCCTACATTAGCTCTATCACCAAGTTGGTGTACATTATGCAAGCAAAGCGATGAAACTCTTGATCACCTCTTCATCCATTGTCCATATGCCTGGGAATCTGGACTAAAATTCTTTCTGCCTTTGGATGGAATTTGCCTCTCACGGGGGACATTATCAGCACTCCCCACTCCACCTTGCTAG

mRNA sequence

ATGCTCCAATTTGCCAATGATACCATGATCTTTTGCCCAAATGAGGAGGAGATTATGGACAAATGGTGGGAGATTTTGAATTTGTTCTTAGAAGGGACTAGATTGTCCATTAACCGTGCCAAAACCTCGACCATTTGCATCAACATGAATGTGGAAAAGATCAAAGATAGGGAGGACAAAATGGGCTGTAAGGTCGAGAATTTCCCAATTAATTACCTTGGATTTCCCTTGGTTAGTTGTGGGAAGAAAATTAGGTTTTGGGAAGACACTTATTGTGATTCTTGGTCCCTTCAAATAGTTTTCCCTGATTTATACATGATATCTCAGAAGAAGAAGGCTTCAATTTCAAATTGTTGGGACTCTAATTCTCAGACTTGGGACCTCAAATTACGCAGGGGCCTTTTTGATCGCAAAACAAGCAATTGGGTGGCTTTAGTTGAGAAATTGAGTGAGGGTGACTATGTGGCTTTTGTGGAAGGAAAGGAATGTATTAGCATAAGTAACCAAAGGAAATCATCAGTCTACAAATACAAAGGACTCAAATGCAATGTTTTAAAAGGCGAAAGGCAGCCTCGAGGCGGTGTGAGACAGGCGTACGCCTCTTATGGTCCAAAGAAGGCGCAAGTTTCGAGGCTAAAAGTTAGAGTTTTGCCTCGAGGCGTAAGCCTAGATAGCCTTTTTAAAAATTGCTCAAATGTACAAACTCTTCTTAAGAAATTGGCTGATCTTGACCCCAGACATTTGAAGGACGATGAAGCTTCTGAATGGATGGACTTAAATGTTATCCTTGATCCCATTGTTCTAGCTCAAACAGCAGACTCGTGGACATGGCCCCTTAACGCCAACAGTCTCTTCTCCACAAAGTCCTTAATGGCCGATATGGGTAACACCACCATCTTCTTGGAGAATCATCTTGTTCAGGCCATTTGGAAGGATATATACCCCAAGAAGATCAAATTCTTCCTTTGGGAATTGGCTCATAGAGCAATCAGCACCAAAGATAATTTACAGAAACGTATGCCTACATTAGCTCTATCACCAAGTTGGTGTACATTATGCAAGCAAAGCGATGAAACTCTTGATCACCTCTTCATCCATTGTCCATATGCCTGGGAATCTGGACTAAAATTCTTTCTGCCTTTGGATGGAATTTGCCTCTCACGGGGGACATTATCAGCACTCCCCACTCCACCTTGCTAG

Coding sequence (CDS)

ATGCTCCAATTTGCCAATGATACCATGATCTTTTGCCCAAATGAGGAGGAGATTATGGACAAATGGTGGGAGATTTTGAATTTGTTCTTAGAAGGGACTAGATTGTCCATTAACCGTGCCAAAACCTCGACCATTTGCATCAACATGAATGTGGAAAAGATCAAAGATAGGGAGGACAAAATGGGCTGTAAGGTCGAGAATTTCCCAATTAATTACCTTGGATTTCCCTTGGTTAGTTGTGGGAAGAAAATTAGGTTTTGGGAAGACACTTATTGTGATTCTTGGTCCCTTCAAATAGTTTTCCCTGATTTATACATGATATCTCAGAAGAAGAAGGCTTCAATTTCAAATTGTTGGGACTCTAATTCTCAGACTTGGGACCTCAAATTACGCAGGGGCCTTTTTGATCGCAAAACAAGCAATTGGGTGGCTTTAGTTGAGAAATTGAGTGAGGGTGACTATGTGGCTTTTGTGGAAGGAAAGGAATGTATTAGCATAAGTAACCAAAGGAAATCATCAGTCTACAAATACAAAGGACTCAAATGCAATGTTTTAAAAGGCGAAAGGCAGCCTCGAGGCGGTGTGAGACAGGCGTACGCCTCTTATGGTCCAAAGAAGGCGCAAGTTTCGAGGCTAAAAGTTAGAGTTTTGCCTCGAGGCGTAAGCCTAGATAGCCTTTTTAAAAATTGCTCAAATGTACAAACTCTTCTTAAGAAATTGGCTGATCTTGACCCCAGACATTTGAAGGACGATGAAGCTTCTGAATGGATGGACTTAAATGTTATCCTTGATCCCATTGTTCTAGCTCAAACAGCAGACTCGTGGACATGGCCCCTTAACGCCAACAGTCTCTTCTCCACAAAGTCCTTAATGGCCGATATGGGTAACACCACCATCTTCTTGGAGAATCATCTTGTTCAGGCCATTTGGAAGGATATATACCCCAAGAAGATCAAATTCTTCCTTTGGGAATTGGCTCATAGAGCAATCAGCACCAAAGATAATTTACAGAAACGTATGCCTACATTAGCTCTATCACCAAGTTGGTGTACATTATGCAAGCAAAGCGATGAAACTCTTGATCACCTCTTCATCCATTGTCCATATGCCTGGGAATCTGGACTAAAATTCTTTCTGCCTTTGGATGGAATTTGCCTCTCACGGGGGACATTATCAGCACTCCCCACTCCACCTTGCTAG

Protein sequence

MLQFANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGCKVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNSQTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCNVLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADLDPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLENHLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETLDHLFIHCPYAWESGLKFFLPLDGICLSRGTLSALPTPPC
Homology
BLAST of Lag0025498 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-27
Identity = 114/433 (26.33%), Postives = 183/433 (42.26%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  ++E+ +     IL+LF   + L+IN +K++   IN+  ++     D  G 
Sbjct: 411 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 470

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
                P  YLG PL        FW++          SW                   SL 
Sbjct: 471 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 530

Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
           I    VF     I+QK +A   N  W+  S   ++ L R             G+    ++
Sbjct: 531 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHST 590

Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
           N+  L + L +     F+  KE       IS  +Q K   +  +G   +     +     
Sbjct: 591 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 650

Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
           +   Y + G K      +   +       P  +++  LF   +N +  +K L +      
Sbjct: 651 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDW 710

Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
                R L+D E + W ++   L   +  +      W LN+N++F T S+  D+   +  
Sbjct: 711 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 770

Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
             N    L + +WK  +PKK KFF+W L H  I+T D LQKR+P   LSP+WC +C +S 
Sbjct: 771 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 830

BLAST of Lag0025498 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-27
Identity = 114/433 (26.33%), Postives = 182/433 (42.03%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  ++E+ +     IL+LF   + L+IN +K++   IN+  ++     D  G 
Sbjct: 505 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 564

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
                P  YLG PL        FW++          SW                   SL 
Sbjct: 565 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 624

Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
           I    VF     I+QK +A   N  W+  S   ++ L R             G+    ++
Sbjct: 625 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHST 684

Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
           N+  L + L +     F+  KE       IS  +Q K   +  +G   +     +     
Sbjct: 685 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 744

Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
           +   Y + G K      +   +       P  + +  LF   +N +  +K L +      
Sbjct: 745 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDW 804

Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
                R L+D E + W ++   L   +  +      W LN+N++F T S+  D+   +  
Sbjct: 805 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 864

Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
             N    L + +WK  +PKK KFF+W L H  I+T D LQKR+P   LSP+WC +C +S 
Sbjct: 865 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 924

BLAST of Lag0025498 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 4.7e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  + ++ +     IL+LF   + L+IN +K++   IN+  +  K   D  G 
Sbjct: 76  FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 135

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
              + P +YLG PL                                  K S SN WD+  
Sbjct: 136 SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 195

Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
           Q            +K S+W     +LS+G  +  +         N    S+  Y+  K N
Sbjct: 196 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 255

Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
               + +        +    P    V RL      +  S+   +   SN   L       
Sbjct: 256 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 315

Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
             R L+D E + W ++   L   +  +      W LN+N++F T S+   +    +   N
Sbjct: 316 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 375

Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
              +L + +WK  +PKK KFF+W L H  I+T D LQKR+P  ALSP+WC +C +S E +
Sbjct: 376 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 383

Query: 364 DHLFIHCPYA 371
           +HLFIHCPY+
Sbjct: 436 NHLFIHCPYS 383

BLAST of Lag0025498 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 4.7e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  + ++ +     IL+LF   + L+IN +K++   IN+  +  K   D  G 
Sbjct: 33  FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 92

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
              + P +YLG PL                                  K S SN WD+  
Sbjct: 93  SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 152

Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
           Q            +K S+W     +LS+G  +  +         N    S+  Y+  K N
Sbjct: 153 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 212

Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
               + +        +    P    V RL      +  S+   +   SN   L       
Sbjct: 213 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 272

Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
             R L+D E + W ++   L   +  +      W LN+N++F T S+   +    +   N
Sbjct: 273 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 332

Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
              +L + +WK  +PKK KFF+W L H  I+T D LQKR+P  ALSP+WC +C +S E +
Sbjct: 333 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 340

Query: 364 DHLFIHCPYA 371
           +HLFIHCPY+
Sbjct: 393 NHLFIHCPYS 340

BLAST of Lag0025498 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-26
Identity = 116/436 (26.61%), Postives = 181/436 (41.51%), Query Frame = 0

Query: 4    FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
            FA+D +IF  + ++ +     IL+LF   + L+IN +K++   IN+  ++ K   D  G 
Sbjct: 613  FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGI 672

Query: 64   KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
               + P +YLG PL        FW++          +W                   SL 
Sbjct: 673  SKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLP 732

Query: 124  I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
            I    VF     I+QK +AS  N  W+  S   ++ L R             G+    ++
Sbjct: 733  IYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNST 792

Query: 184  N--------WVALVEK--LSEGDYVAFVEGKECISISNQRKSS-------------VYKY 243
            N        W  L EK  L +   ++  + ++  S  +  K S              + Y
Sbjct: 793  NFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFY 852

Query: 244  KGLKCNVLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLL 303
            K +   V  GE          +    P    V RL      +  S+   +   SN   L 
Sbjct: 853  KNISWKVNDGE--DISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLH 912

Query: 304  KKLADLDPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNT 363
                    R L+D E + W ++   L   +  +      W LN+N++F T S+   +   
Sbjct: 913  IN------RPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEA 972

Query: 364  TIFLEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCK 371
             I   N   +L + +WK  +PKK KFF+W L H  I+T D LQKR+P   LSP+WC +C 
Sbjct: 973  PISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCN 1032

BLAST of Lag0025498 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 114/433 (26.33%), Postives = 182/433 (42.03%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  ++E+ +     IL+LF   + L+IN +K++   IN+  ++     D  G 
Sbjct: 505 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 564

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
                P  YLG PL        FW++          SW                   SL 
Sbjct: 565 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 624

Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
           I    VF     I+QK +A   N  W+  S   ++ L R             G+    ++
Sbjct: 625 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHST 684

Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
           N+  L + L +     F+  KE       IS  +Q K   +  +G   +     +     
Sbjct: 685 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 744

Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
           +   Y + G K      +   +       P  + +  LF   +N +  +K L +      
Sbjct: 745 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDW 804

Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
                R L+D E + W ++   L   +  +      W LN+N++F T S+  D+   +  
Sbjct: 805 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 864

Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
             N    L + +WK  +PKK KFF+W L H  I+T D LQKR+P   LSP+WC +C +S 
Sbjct: 865 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 924

BLAST of Lag0025498 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 114/433 (26.33%), Postives = 183/433 (42.26%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  ++E+ +     IL+LF   + L+IN +K++   IN+  ++     D  G 
Sbjct: 411 FADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRANSIVDSWGI 470

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
                P  YLG PL        FW++          SW                   SL 
Sbjct: 471 SKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLP 530

Query: 124 I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
           I    VF     I+QK +A   N  W+  S   ++ L R             G+    ++
Sbjct: 531 IYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHST 590

Query: 184 NWVALVEKLSEGDYVAFVEGKE------CISISNQRKSSVYKYKGLKCNVLKGERQPRGG 243
           N+  L + L +     F+  KE       IS  +Q K   +  +G   +     +     
Sbjct: 591 NFALLCKWLWK-----FLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNC 650

Query: 244 VRQAYASYGPKKAQVSRLKVRV------LPRGVSLDSLFKNCSNVQTLLKKLADLD---- 303
           +   Y + G K      +   +       P  +++  LF   +N +  +K L +      
Sbjct: 651 ISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDW 710

Query: 304 ----PRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIF 363
                R L+D E + W ++   L   +  +      W LN+N++F T S+  D+   +  
Sbjct: 711 NIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS 770

Query: 364 LEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSD 371
             N    L + +WK  +PKK KFF+W L H  I+T D LQKR+P   LSP+WC +C +S 
Sbjct: 771 PTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQ 830

BLAST of Lag0025498 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  + ++ +     IL+LF   + L+IN +K++   IN+  +  K   D  G 
Sbjct: 76  FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 135

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
              + P +YLG PL                                  K S SN WD+  
Sbjct: 136 SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 195

Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
           Q            +K S+W     +LS+G  +  +         N    S+  Y+  K N
Sbjct: 196 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 255

Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
               + +        +    P    V RL      +  S+   +   SN   L       
Sbjct: 256 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 315

Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
             R L+D E + W ++   L   +  +      W LN+N++F T S+   +    +   N
Sbjct: 316 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 375

Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
              +L + +WK  +PKK KFF+W L H  I+T D LQKR+P  ALSP+WC +C +S E +
Sbjct: 376 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 383

Query: 364 DHLFIHCPYA 371
           +HLFIHCPY+
Sbjct: 436 NHLFIHCPYS 383

BLAST of Lag0025498 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-27
Identity = 101/370 (27.30%), Postives = 157/370 (42.43%), Query Frame = 0

Query: 4   FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
           FA+D +IF  + ++ +     IL+LF   + L+IN +K++   IN+  +  K   D  G 
Sbjct: 33  FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGI 92

Query: 64  KVENFPINYLGFPLVSCGKKIRFWEDTYCDSWSLQIVFPDLYMISQKKKASISNCWDSNS 123
              + P +YLG PL                                  K S SN WD+  
Sbjct: 93  SKGHLPTSYLGMPLGG--------------------------------KPSSSNFWDNVL 152

Query: 124 QTWDLKLRRGLFDRKTSNWVALVEKLSEGDYVAFVEGKECISISNQRKSSVYKYKGLKCN 183
           Q            +K S+W     +LS+G  +  +         N    S+  Y+  K N
Sbjct: 153 QK---------IQKKLSSW--KYSQLSKGGRITLI---------NSTLESLPIYQIWKVN 212

Query: 184 VLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLLKKLADL 243
               + +        +    P    V RL      +  S+   +   SN   L       
Sbjct: 213 ----DGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHIN---- 272

Query: 244 DPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNTTIFLEN 303
             R L+D E + W ++   L   +  +      W LN+N++F T S+   +    +   N
Sbjct: 273 --RPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPAN 332

Query: 304 ---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCKQSDETL 363
              +L + +WK  +PKK KFF+W L H  I+T D LQKR+P  ALSP+WC +C +S E +
Sbjct: 333 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 340

Query: 364 DHLFIHCPYA 371
           +HLFIHCPY+
Sbjct: 393 NHLFIHCPYS 340

BLAST of Lag0025498 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-26
Identity = 116/436 (26.61%), Postives = 181/436 (41.51%), Query Frame = 0

Query: 4    FANDTMIFCPNEEEIMDKWWEILNLFLEGTRLSINRAKTSTICINMNVEKIKDREDKMGC 63
            FA+D +IF  + ++ +     IL+LF   + L+IN +K++   IN+  ++ K   D  G 
Sbjct: 613  FADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGI 672

Query: 64   KVENFPINYLGFPLVSCGKKIRFWEDTY------CDSW-------------------SLQ 123
               + P +YLG PL        FW++          +W                   SL 
Sbjct: 673  SKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLP 732

Query: 124  I----VFPDLYMISQKKKASISN-CWDSNSQTWDLKLRR-------------GLFDRKTS 183
            I    VF     I+QK +AS  N  W+  S   ++ L R             G+    ++
Sbjct: 733  IYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNST 792

Query: 184  N--------WVALVEK--LSEGDYVAFVEGKECISISNQRKSS-------------VYKY 243
            N        W  L EK  L +   ++  + ++  S  +  K S              + Y
Sbjct: 793  NFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFY 852

Query: 244  KGLKCNVLKGERQPRGGVRQAYASYGPKKAQVSRLKVRVLPRGVSLDSLFKNCSNVQTLL 303
            K +   V  GE          +    P    V RL      +  S+   +   SN   L 
Sbjct: 853  KNISWKVNDGE--DISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLH 912

Query: 304  KKLADLDPRHLKDDEASEWMDLNVILDPIVLAQTADSWTWPLNANSLFSTKSLMADMGNT 363
                    R L+D E + W ++   L   +  +      W LN+N++F T S+   +   
Sbjct: 913  IN------RPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEA 972

Query: 364  TIFLEN---HLVQAIWKDIYPKKIKFFLWELAHRAISTKDNLQKRMPTLALSPSWCTLCK 371
             I   N   +L + +WK  +PKK KFF+W L H  I+T D LQKR+P   LSP+WC +C 
Sbjct: 973  PISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCN 1032

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044556.13.6e-2726.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.13.6e-2726.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044451.14.7e-2727.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK29578.14.7e-2727.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.15.2e-2626.61LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIB81.8e-2726.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR151.8e-2726.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA72.3e-2727.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E1E32.3e-2727.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I72.5e-2626.61LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 286..371
e-value: 2.9E-17
score: 63.2
NoneNo IPR availablePANTHERPTHR33116:SF38OS01G0158850 PROTEINcoord: 13..78
NoneNo IPR availablePANTHERPTHR33116:SF38OS01G0158850 PROTEINcoord: 300..379
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 300..379
coord: 13..78
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..77
score: 9.244599

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025498.1Lag0025498.1mRNA