Lag0020132 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020132
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr5: 48351174 .. 48352175 (+)
RNA-Seq ExpressionLag0020132
SyntenyLag0020132
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGGATGTTGAAGAGTTAGTAAATGAATGGAAGAATTTCAATCTAATGGAGAAAGAGAAAGGAAATGACATAAAGCTAGATGAAGAAGATATGACAGAAATCAAAGATCAGATGGACCACTGCATCGTTGGAAAGCTTCTCTCCAATCGAATCATTGCCCCATTGGCCATCAAGAATGCTTTGAGAGGAGCTTGGAAAACAAGGAAAAATTTCAAAGTTGAATCCACTGGGAAAAATATATTCAACTTCAAGTTTGAATGCCAAGAAGACAGAAACTGGGTGATGTGCAATGGTCCATGGACTTTTGACAATTCACTAATAGTTCTTGAATACCCAATGGCTAATCAAAGATCCGTGGAGATGGAGTTCAAGAATGCTGTTTTTTGGATAAGGTTAATAAACCTACCTATGGGATACAGAAACAGGAAAGTGGCAAGTAAAATAGGGAATAGTATTGGAGATTTTATTGATGGAGGAGAATGTGATGAAGAGCTTGTTTGGGGCCAAAGTATGCGCATAAGAGTAAGGTTAGACATAACTAAGCCTCTGTTGAGAGGCTTTATGCTCAAAGGACCTGATATCAAAGGGGAATGCTGGGTTACTATACGTTATGAAAGGTTGCCTGAGCTCTGTTTTCTTTGTGGCAAGATTGGGCACGTTGCAAAGGATTGTGAAAGTGGAAAAGGAAGAAAGGAAAGTAACATGGACAAATGGGAATTTGGGAACTGGTTACGGTTCCAATCTTTCCCAAGATTCACCAAGAAACCTGATTCACCAACCAATTCAAATTATAACCAAGATTTTCAGAAAGACCAGTCTGGGGAAGGAGGAAAAGACAGAGAGATAGGGCCAAGTTATGGGGAGAAAGGCAAAGCGATTATTGGGTATGATTTAGAAGCTGAAGAAGATCTTTATGATTTGCGAAACAAAGGGGAGGAAGGTACATCCTCTTGGACTTATGATCTAAAACAGTGGCAAACATGGAGACTGAATTAA

mRNA sequence

ATGAACATGGATGTTGAAGAGTTAGTAAATGAATGGAAGAATTTCAATCTAATGGAGAAAGAGAAAGGAAATGACATAAAGCTAGATGAAGAAGATATGACAGAAATCAAAGATCAGATGGACCACTGCATCGTTGGAAAGCTTCTCTCCAATCGAATCATTGCCCCATTGGCCATCAAGAATGCTTTGAGAGGAGCTTGGAAAACAAGGAAAAATTTCAAAGTTGAATCCACTGGGAAAAATATATTCAACTTCAAGTTTGAATGCCAAGAAGACAGAAACTGGGTGATGTGCAATGGTCCATGGACTTTTGACAATTCACTAATAGTTCTTGAATACCCAATGGCTAATCAAAGATCCGTGGAGATGGAGTTCAAGAATGCTGTTTTTTGGATAAGGTTAATAAACCTACCTATGGGATACAGAAACAGGAAAGTGGCAAGTAAAATAGGGAATAGTATTGGAGATTTTATTGATGGAGGAGAATGTGATGAAGAGCTTGTTTGGGGCCAAAGTATGCGCATAAGAGTAAGGTTAGACATAACTAAGCCTCTGTTGAGAGGCTTTATGCTCAAAGGACCTGATATCAAAGGGGAATGCTGGGTTACTATACGTTATGAAAGGTTGCCTGAGCTCTGTTTTCTTTGTGGCAAGATTGGGCACGTTGCAAAGGATTGTGAAAGTGGAAAAGGAAGAAAGGAAAGTAACATGGACAAATGGGAATTTGGGAACTGGTTACGGTTCCAATCTTTCCCAAGATTCACCAAGAAACCTGATTCACCAACCAATTCAAATTATAACCAAGATTTTCAGAAAGACCAGTCTGGGGAAGGAGGAAAAGACAGAGAGATAGGGCCAAGTTATGGGGAGAAAGGCAAAGCGATTATTGGGTATGATTTAGAAGCTGAAGAAGATCTTTATGATTTGCGAAACAAAGGGGAGGAAGGTACATCCTCTTGGACTTATGATCTAAAACAGTGGCAAACATGGAGACTGAATTAA

Coding sequence (CDS)

ATGAACATGGATGTTGAAGAGTTAGTAAATGAATGGAAGAATTTCAATCTAATGGAGAAAGAGAAAGGAAATGACATAAAGCTAGATGAAGAAGATATGACAGAAATCAAAGATCAGATGGACCACTGCATCGTTGGAAAGCTTCTCTCCAATCGAATCATTGCCCCATTGGCCATCAAGAATGCTTTGAGAGGAGCTTGGAAAACAAGGAAAAATTTCAAAGTTGAATCCACTGGGAAAAATATATTCAACTTCAAGTTTGAATGCCAAGAAGACAGAAACTGGGTGATGTGCAATGGTCCATGGACTTTTGACAATTCACTAATAGTTCTTGAATACCCAATGGCTAATCAAAGATCCGTGGAGATGGAGTTCAAGAATGCTGTTTTTTGGATAAGGTTAATAAACCTACCTATGGGATACAGAAACAGGAAAGTGGCAAGTAAAATAGGGAATAGTATTGGAGATTTTATTGATGGAGGAGAATGTGATGAAGAGCTTGTTTGGGGCCAAAGTATGCGCATAAGAGTAAGGTTAGACATAACTAAGCCTCTGTTGAGAGGCTTTATGCTCAAAGGACCTGATATCAAAGGGGAATGCTGGGTTACTATACGTTATGAAAGGTTGCCTGAGCTCTGTTTTCTTTGTGGCAAGATTGGGCACGTTGCAAAGGATTGTGAAAGTGGAAAAGGAAGAAAGGAAAGTAACATGGACAAATGGGAATTTGGGAACTGGTTACGGTTCCAATCTTTCCCAAGATTCACCAAGAAACCTGATTCACCAACCAATTCAAATTATAACCAAGATTTTCAGAAAGACCAGTCTGGGGAAGGAGGAAAAGACAGAGAGATAGGGCCAAGTTATGGGGAGAAAGGCAAAGCGATTATTGGGTATGATTTAGAAGCTGAAGAAGATCTTTATGATTTGCGAAACAAAGGGGAGGAAGGTACATCCTCTTGGACTTATGATCTAAAACAGTGGCAAACATGGAGACTGAATTAA

Protein sequence

MNMDVEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALRGAWKTRKNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEMEFKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDITKPLLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMDKWEFGNWLRFQSFPRFTKKPDSPTNSNYNQDFQKDQSGEGGKDREIGPSYGEKGKAIIGYDLEAEEDLYDLRNKGEEGTSSWTYDLKQWQTWRLN
Homology
BLAST of Lag0020132 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 206.1 bits (523), Expect = 4.8e-49
Identity = 102/248 (41.13%), Postives = 151/248 (60.89%), Query Frame = 0

Query: 3   MDVEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNA 62
           MD E L+ +W+ F L  +E    + +D + +   +  + + +VGKLL+ RII+   +   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 63  LRGAWKTRKNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVE 122
           L  AWK      VES GKN+F F F  + D N VM  GPW FD +LIVL+ P +++   E
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 123 MEFKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEE-LVWGQSMRIRVRLDI 182
           +EF    FWI L +LPM + N+ +A ++GN+IG+F+D  +C+E+   WG S+RIRV +DI
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVD-VDCNEKGFSWGASLRIRVLIDI 180

Query: 183 TKPLLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESG-KGRKESNMDKW 242
           TKPL RG  +      G CW+ I+YERLP+ C+ CG IGH + DC++     ++ +    
Sbjct: 181 TKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATS 240

Query: 243 EFGNWLRF 249
           E+G WLRF
Sbjct: 241 EYGPWLRF 247

BLAST of Lag0020132 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 3.0e-43
Identity = 91/248 (36.69%), Postives = 139/248 (56.05%), Query Frame = 0

Query: 3   MDVEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNA 62
           M    L+ EWKNF L  +E    + +D   +      ++  ++ KLLS R I+   +KN 
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 63  LRGAWKTR-KNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSV 122
           L+ AWK   K F V+  G NIF F F    DRN ++  GPWTFD +LI+++ P++  + +
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 123 EMEFKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDI 182
           +M+F+N   W+   +L +   N+ +A+++GN+IG F D         WG  +R+RVR D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

Query: 183 TKPLLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMDKWE 242
            KPL RG  L      G CW+ I+YERLP+  + CG++ H+ KDC       +S     +
Sbjct: 181 MKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSD--CCVDSVSKNLQ 240

Query: 243 FGNWLRFQ 250
           +G WLRFQ
Sbjct: 241 YGPWLRFQ 246

BLAST of Lag0020132 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 4.1e-40
Identity = 99/282 (35.11%), Postives = 148/282 (52.48%), Query Frame = 0

Query: 7   ELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALRGA 66
           +L+ EWKNF L  +E+   I +D         +++  +VGKL   R I    +KN +R A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 67  WKTRKN-FKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEMEF 126
           WK   N F+V+S G N+F F F    DRN +  +GPWTFD +L+++  P+A     E++F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 127 KNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDE-ELVWGQSMRIRVRLDITKP 186
                W+R  +LP+G   R +A ++GN++G F +  +CD+    WG ++R+RV LDI+KP
Sbjct: 125 TKLPIWVRFFDLPLGCITRDMAIRLGNALGGF-EEADCDDLNPDWGSNLRVRVMLDISKP 184

Query: 187 LLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMDKWEFGN 246
           L RG  L      G  W+ I+YERLP+ C+ CG                 S+  K ++G+
Sbjct: 185 LRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG---------------LSSSRKKHQYGS 244

Query: 247 WLRFQSFPRFTKKPDSPTNSNYNQDFQKDQSGEGGKDREIGP 287
           WLR+Q     T KP  P      +D   D+SG         P
Sbjct: 245 WLRYQG----TVKPTMPQMKQPQEDL-LDKSGNNSFSSSTSP 265

BLAST of Lag0020132 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-38
Identity = 83/234 (35.47%), Postives = 130/234 (55.56%), Query Frame = 0

Query: 18  MEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALRGAWKTRKNFKVES 77
           +  E+   +++  E  + +  + D C+VGKLL+ R     A+KN L   W+  K  +V  
Sbjct: 14  LTSEEDAVVRIGGESTSLMMGKSDMCLVGKLLTRRPFNVEAMKNTLLSVWQPTKGMQVRV 73

Query: 78  TGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEMEFKNAVFWIRLINL 137
            G N+F F F    D+  V+ +GPWTFD  L++L     N +  +++     FW+ + NL
Sbjct: 74  IGDNLFVFVFGHVVDKRRVLSDGPWTFDKHLLMLGEMDPNVQPSDIQLTRVQFWVHVCNL 133

Query: 138 PMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDITKPLLRGFMLKGPDIK 197
           P+   N+KV   +GN++G FID    D  +VWG++MRIRV LD+ KPL RG  L     +
Sbjct: 134 PLVLMNKKVGEIVGNAVGQFIDMDYEDGGIVWGRTMRIRVALDVRKPLRRGMKLALSSAE 193

Query: 198 GECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKE-SNMDKWEFGNWLRFQS 251
              WV  +YERLP  C+ CG++GH  ++C+      + S +D  ++G WLR  +
Sbjct: 194 -PIWVDFKYERLPIYCYFCGRLGHSERECDDKLSSADGSRVDSLQYGAWLRMDN 246

BLAST of Lag0020132 vs. NCBI nr
Match: OMO70721.1 (Zinc finger, CCHC-type [Corchorus olitorius])

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-37
Identity = 84/248 (33.87%), Postives = 136/248 (54.84%), Query Frame = 0

Query: 6   EELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALRG 65
           E+L + WK+F L  +E+ + I+ D+ +   + DQ    +VGKLL+ +     A  N ++ 
Sbjct: 3   EDLADLWKHFKLTAEEEDDVIEDDDLESNPVDDQPKPWLVGKLLTEKPFNKQAFMNTMKN 62

Query: 66  AWKTRKNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEMEF 125
            WK  K  ++ +  +N+F FKF  + D+  V+   PWTF N+L++      + R  +  F
Sbjct: 63  IWKLAKEVRMIALEENLFLFKFSTEGDKERVVDGSPWTFQNNLLMFANFHGDLRPEDYVF 122

Query: 126 KNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDITKPL 185
             A+FWIR+ +L +G R R +A  IG  IG+ +D  +  +   W   +R+RV +D+TKPL
Sbjct: 123 TKALFWIRVYDLTLGKRTRDMAEIIGRRIGELVDVDQTLDGEGWADFLRVRVAIDVTKPL 182

Query: 186 LRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMDKWEFGNW 245
            R  ++K  D  G     + YER P  C+ CG+IGHV++DC   K  KE   +  ++G W
Sbjct: 183 RRQILVKWDD--GNIRGRLAYERPPSFCYDCGRIGHVSEDCSMEKVIKEGEEEVKQYGPW 242

Query: 246 LRFQSFPR 254
           +   S  R
Sbjct: 243 MVASSLKR 248

BLAST of Lag0020132 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.3e-49
Identity = 102/248 (41.13%), Postives = 151/248 (60.89%), Query Frame = 0

Query: 3   MDVEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNA 62
           MD E L+ +W+ F L  +E    + +D + +   +  + + +VGKLL+ RII+   +   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 63  LRGAWKTRKNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVE 122
           L  AWK      VES GKN+F F F  + D N VM  GPW FD +LIVL+ P +++   E
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 123 MEFKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEE-LVWGQSMRIRVRLDI 182
           +EF    FWI L +LPM + N+ +A ++GN+IG+F+D  +C+E+   WG S+RIRV +DI
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVD-VDCNEKGFSWGASLRIRVLIDI 180

Query: 183 TKPLLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESG-KGRKESNMDKW 242
           TKPL RG  +      G CW+ I+YERLP+ C+ CG IGH + DC++     ++ +    
Sbjct: 181 TKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATS 240

Query: 243 EFGNWLRF 249
           E+G WLRF
Sbjct: 241 EYGPWLRF 247

BLAST of Lag0020132 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-43
Identity = 91/248 (36.69%), Postives = 139/248 (56.05%), Query Frame = 0

Query: 3   MDVEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNA 62
           M    L+ EWKNF L  +E    + +D   +      ++  ++ KLLS R I+   +KN 
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 63  LRGAWKTR-KNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSV 122
           L+ AWK   K F V+  G NIF F F    DRN ++  GPWTFD +LI+++ P++  + +
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 123 EMEFKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDI 182
           +M+F+N   W+   +L +   N+ +A+++GN+IG F D         WG  +R+RVR D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

Query: 183 TKPLLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMDKWE 242
            KPL RG  L      G CW+ I+YERLP+  + CG++ H+ KDC       +S     +
Sbjct: 181 MKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSD--CCVDSVSKNLQ 240

Query: 243 FGNWLRFQ 250
           +G WLRFQ
Sbjct: 241 YGPWLRFQ 246

BLAST of Lag0020132 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40
Identity = 99/282 (35.11%), Postives = 148/282 (52.48%), Query Frame = 0

Query: 7   ELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALRGA 66
           +L+ EWKNF L  +E+   I +D         +++  +VGKL   R I    +KN +R A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 67  WKTRKN-FKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEMEF 126
           WK   N F+V+S G N+F F F    DRN +  +GPWTFD +L+++  P+A     E++F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 127 KNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDE-ELVWGQSMRIRVRLDITKP 186
                W+R  +LP+G   R +A ++GN++G F +  +CD+    WG ++R+RV LDI+KP
Sbjct: 125 TKLPIWVRFFDLPLGCITRDMAIRLGNALGGF-EEADCDDLNPDWGSNLRVRVMLDISKP 184

Query: 187 LLRGFMLKGPDIKGECWVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMDKWEFGN 246
           L RG  L      G  W+ I+YERLP+ C+ CG                 S+  K ++G+
Sbjct: 185 LRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG---------------LSSSRKKHQYGS 244

Query: 247 WLRFQSFPRFTKKPDSPTNSNYNQDFQKDQSGEGGKDREIGP 287
           WLR+Q     T KP  P      +D   D+SG         P
Sbjct: 245 WLRYQG----TVKPTMPQMKQPQEDL-LDKSGNNSFSSSTSP 265

BLAST of Lag0020132 vs. ExPASy TrEMBL
Match: A0A2N9FNT0 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16695 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 90/248 (36.29%), Postives = 138/248 (55.65%), Query Frame = 0

Query: 5   VEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALR 64
           +E + + WKNF+L +KE G D+     D+     Q ++ +  K L++R++   A+    +
Sbjct: 1   MESIEDMWKNFSLSDKE-GLDV-----DLANTSQQSENILAAKFLTSRVLNMDAVARTFK 60

Query: 65  GAWKTRKNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEME 124
             WKTR++F V+  G N   F FE   D   V+ N PWT+D  L+V +    ++   +  
Sbjct: 61  PLWKTRQSFTVQDIGGNKVAFVFEDAMDLERVLMNEPWTYDKFLVVFQRVQGDEPIQDSM 120

Query: 125 FKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDITKP 184
           F +  FW++L NLP+  R  + A  IG SIG        ++E      MR+R+RL+I +P
Sbjct: 121 FSHTSFWVQLHNLPIRRRTEEAAESIGRSIGLVEKVAASEDERGGENCMRVRIRLEINRP 180

Query: 185 LLRGFMLKGPD-IKGECWVTIRYERLPELCFLCGKIGHVAKDCESG-KGRKESNMDKWEF 244
           L RG ++K  + IKG  WV  RYERLP  C+ CG + H  KDC+ G + R+ SN  +++F
Sbjct: 181 LCRGRLVKFEEGIKG--WVAFRYERLPNFCYWCGCLDHGEKDCDVGIQQRQTSNKQEYQF 240

Query: 245 GNWLRFQS 251
           G WLR  S
Sbjct: 241 GAWLRATS 240

BLAST of Lag0020132 vs. ExPASy TrEMBL
Match: A0A2N9HYS7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44751 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-38
Identity = 90/248 (36.29%), Postives = 138/248 (55.65%), Query Frame = 0

Query: 5   VEELVNEWKNFNLMEKEKGNDIKLDEEDMTEIKDQMDHCIVGKLLSNRIIAPLAIKNALR 64
           +E + + WKNF+L +KE G D+     D+     Q ++ +  K L++R++   A+    +
Sbjct: 1   MESIEDMWKNFSLSDKE-GLDV-----DLANTSQQSENILAAKFLTSRVLNMDAVARTFK 60

Query: 65  GAWKTRKNFKVESTGKNIFNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEME 124
             WKTR++F V+  G N   F FE   D   V+ N PWT+D  L+V +    ++   +  
Sbjct: 61  PLWKTRQSFTVQDIGGNKVAFVFEDAMDLERVLRNEPWTYDKFLVVFQRVQGDEPIQDSM 120

Query: 125 FKNAVFWIRLINLPMGYRNRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDITKP 184
           F +  FW++L NLP+  R  + A  IG SIG        ++E      MR+R+RL+I +P
Sbjct: 121 FSHTSFWVQLHNLPIRRRTEEAAESIGRSIGLVEKVAASEDERGGENCMRVRIRLEINRP 180

Query: 185 LLRGFMLKGPD-IKGECWVTIRYERLPELCFLCGKIGHVAKDCESG-KGRKESNMDKWEF 244
           L RG ++K  + IKG  WV  RYERLP  C+ CG + H  KDC+ G + R+ SN  +++F
Sbjct: 181 LCRGRLVKFEEGIKG--WVAFRYERLPNFCYCCGCLDHGEKDCDVGIQQRQTSNKQEYQF 240

Query: 245 GNWLRFQS 251
           G WLR  S
Sbjct: 241 GAWLRATS 240

BLAST of Lag0020132 vs. TAIR 10
Match: AT3G31430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits to 291 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-11
Identity = 44/158 (27.85%), Postives = 70/158 (44.30%), Query Frame = 0

Query: 83  FNFKFECQEDRNWVMCNGPWTFDNSLIVLEYPMANQRSVEMEFKNAVFWIRLINLPMGYR 142
           F+F F  +E    V+  GPW F++ +I+L+     +  + + F    FW+++  +P  + 
Sbjct: 173 FHFIFTLEESLETVLRRGPWAFNDWMILLQ---RWEPQIPL-FPFIPFWVQIRGIPFQFL 232

Query: 143 NRKVASKIGNSIGDFIDGGECDEELVWGQSMRIRVRLDITKPL--LRGFMLKGPDIKGEC 202
           NR V   IG ++G  +D     E +      R+ +  DIT PL   R F           
Sbjct: 233 NRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTA---GVNT 292

Query: 203 WVTIRYERLPELCFLCGKIGHVAKDCESGKGRKESNMD 239
            +  RYERL   C +CG + H    C    G +E   D
Sbjct: 293 LLRFRYERLRGFCEVCGMLTHDFGACLIQNGGEEQADD 323

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.14.8e-4941.13uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.13.0e-4336.69uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.14.1e-4035.11uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028122006.11.7e-3835.47uncharacterized protein LOC114319195 [Camellia sinensis][more]
OMO70721.12.5e-3733.87Zinc finger, CCHC-type [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU552.3e-4941.13uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ11.5e-4336.69uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX302.0e-4035.11uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9FNT02.4e-3836.29RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16695 ... [more]
A0A2N9HYS73.2e-3836.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44751 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G31430.15.5e-1127.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 212..228
e-value: 0.0014
score: 27.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 213..228
score: 10.180168
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 179..227
e-value: 3.5E-13
score: 49.0
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 33..177
e-value: 3.8E-28
score: 97.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..273
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 14..272
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 14..272
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 211..234

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020132.1Lag0020132.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding