Lag0017604 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017604
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H protein
Locationchr5: 5875375 .. 5877491 (+)
RNA-Seq ExpressionLag0017604
SyntenyLag0017604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGAGCCAGGAGACATCTTTGTCAGACGTCGAGCGACAGAGCCGATGGTGGAAAAAGGTATGGAAGATGAACGTGCCATCCAAAGTAAAAAATTTTGTGTGGAAATCTTTTCATAACTTCATTCCAACAATGGTCAATCTAAGGACTCACCATGTTCAAGTAAGTGGGATTTGTCCACTTTGTCATGAAGATATGGAAACAACGGATCATGCCCTGTTTCAGTGTTCTCGGGCTCGCGAGATATGGACTTTGATTTATCCGCCGATGATGCGAATTCAAGTGGATCAGATGGATATTAAAGATCGATGGCAAGGGTTGATTGATGAACCAATGCGGAGCTTAGAGCGGGTTTCTGTGGGAGCTTGGTCTATTTGGAATGATAGGAACAGCTTGGTTCATAATCAACAAATCCCTGACCCAGTGGAGCGATGTGATTGGATCACAAATTATCTAGAAGCTTTCTGGTCCGCGAATCCTAAAAACATTTCCCATATCCAGACAAAAGAAGATATAGTTAATCTCATAGTACAAGGTGAAGAGAGGATTATGCATACTGATGCTTCGTTTCAGGGGAATCTGAGTTCCTGTGGAATAGGTGTTGTCATACGTGATAAAATGGGATGTCTTGTGGCGGTGCAGTCCCTATCTTCCTTGGGTTGCATTTCGTCATTGGGTGCGGAAGCTATTGCGGTTTTAGAAGGGTTACGTTTGGCTAATAAGTTAAATATTCAGTGCCTAACTATTTTTTCAGACTCTTTGTCGCTGATCAATATGCTCAATGATGTGGTCCAGATGGAGGCTTGTGTTGCCGCAACGATTTGGGATATTAGAGCAATGAAAAGAACTTTCCAGAGAGTGAGTTTCGAGTATACGAAGCGTTGTTTTAATGGTCTTTCTCATAAGCTTGCAAGATCAGCGATTGTGTCACCTACTAATTTATGGGTAGGAAACTATCCTACATGGATAGAGACTGTATCGCTCAAAGAGCGAATGTTCTTTGTACCCCTATGGGGATCTGATGTTTTCGAATGTTATTATCATATTCTCAAAAAAAAAAAAAAATCTCAAATCAATTATAAATTTTATGAATCCTTTTAGGAGCTTTAATTTGGGTTTTCAATTTGGGAAAGAAAGGAACTTTGGAATTTAAAGTAAATCCCTAGAATTTTTCCTCTCACTGTTGCCTTATTGGTCATTCTTCCCAGTACCCTTAAAAGAAAAATTTCATCTCCTTCTCTCTCTCTTTCACGTATTAGTTTTACGAGTTTGGAGTTGTGGAACACTACCTTACGCATGTTTGAGCCGTCGGGTATTGTCTTGTAATCTTCAATGAATTTTGACTTATGTCGAATCCCTCAAACACGTGATTTGTGCGCCTTTTGGCTAGCAACTAGCATCGTTCTTCCTTTTTCGATAAGGTCATGCACTACCACATGCTCCATTAAGCTTCAATTTGGCTTACCCAAACGCTAACGACTCCAAAATTGTAGGATTAGATGCTTTCAATCACCAAATAGCATCTGTTAGGTTCAAATCAAACTTTTGGCATTTACCCATAGCTTGAAAGGTCTCATATTATATTACCCATAGTCCTACGGCTTTGGATCATTGTTTTTGGAGCTTTTCGATCACTGTGCAGCAAGGTTCAGGCCCTTTTCAATAAGGTTCGGCAACTTGCAGCGTGCTCTAATTAAAGTGCTTTAAGGTTGTTAACTTGTTCTCTAATCCTTGGAGGGCCTTTGCTTGTAGGTTTGGACTCTTTCAATCTCGGTCCAACATTAGTTCGAGCTTGTTTGGGTAGTTCAGTAAGTTTCAGTAAACGTTATACCCGTTCGAATTTATTAAAAGTATTTTTAAGGTTTGATATATCAATCCCTGATGTTTGGAAGTTCTCCGTTTGTAGGTTCAGACTCATTCGATCACTTGTAGCTTGGACCCAAGTTCTTTTTGGTGAGGACCAGTTAGGAAAGCTTTGTTTAAACCCTTTCAAGCTAGTTTTGTGTGTTGTGAATTAGTTTCTAATCCTTATAAACTTTGCTTATAGTTTGAGCTTGCTTTCAGATTGTTCAAATCCCATCGCCTATTGTTGGGAGCTCGTTAGGTTCACTTAG

mRNA sequence

ATGCTGAAGAGCCAGGAGACATCTTTGTCAGACGTCGAGCGACAGAGCCGATGGTGGAAAAAGGTATGGAAGATGAACGTGCCATCCAAAGTAAAAAATTTTGTGTGGAAATCTTTTCATAACTTCATTCCAACAATGGTCAATCTAAGGACTCACCATGTTCAAGTAAGTGGGATTTGTCCACTTTGTCATGAAGATATGGAAACAACGGATCATGCCCTGTTTCAGTGTTCTCGGGCTCGCGAGATATGGACTTTGATTTATCCGCCGATGATGCGAATTCAAGTGGATCAGATGGATATTAAAGATCGATGGCAAGGGTTGATTGATGAACCAATGCGGAGCTTAGAGCGGGTTTCTGTGGGAGCTTGGTCTATTTGGAATGATAGGAACAGCTTGGTTCATAATCAACAAATCCCTGACCCAGTGGAGCGATGTGATTGGATCACAAATTATCTAGAAGCTTTCTGGTCCGCGAATCCTAAAAACATTTCCCATATCCAGACAAAAGAAGATATAGTTAATCTCATAGTACAAGGTGAAGAGAGGATTATGCATACTGATGCTTCGTTTCAGGGGAATCTGAGTTCCTGTGGAATAGGTGTTGTCATACGTGATAAAATGGGATGTCTTGTGGCGGTGCAGTCCCTATCTTCCTTGGGTTGCATTTCGTCATTGGGTGCGGAAGCTATTGCGGTTTTAGAAGGGTTACGTTTGGCTAATAAGTTAAATATTCAGTGCCTAACTATTTTTTCAGACTCTTTGTCGCTGATCAATATGCTCAATGATGTGGTCCAGATGGAGGCTTGTGTTGCCGCAACGATTTGGGATATTAGAGCAATGAAAAGAACTTTCCAGAGAGTGAGTTTCGAGTATACGAAGCGTTGTTTTAATGGTCTTTCTCATAAGCTTGCAAGATCAGCGATTGTGTCACCTACTAATTTATGGGTAGGAAACTATCCTACATGGATAGAGACTGTATCGCTCAAAGAGCGAATGTTCTTTGTACCCCTATGGGGATCTGATGTTTTCGAATGTTTGGACTCTTTCAATCTCGGTCCAACATTAGTTCGAGCTTGTTTGGGTAGTTCAGTTCAGACTCATTCGATCACTTGTAGCTTGGACCCAAGTTCTTTTTGTTTGAGCTTGCTTTCAGATTGTTCAAATCCCATCGCCTATTGTTGGGAGCTCGTTAGGTTCACTTAG

Coding sequence (CDS)

ATGCTGAAGAGCCAGGAGACATCTTTGTCAGACGTCGAGCGACAGAGCCGATGGTGGAAAAAGGTATGGAAGATGAACGTGCCATCCAAAGTAAAAAATTTTGTGTGGAAATCTTTTCATAACTTCATTCCAACAATGGTCAATCTAAGGACTCACCATGTTCAAGTAAGTGGGATTTGTCCACTTTGTCATGAAGATATGGAAACAACGGATCATGCCCTGTTTCAGTGTTCTCGGGCTCGCGAGATATGGACTTTGATTTATCCGCCGATGATGCGAATTCAAGTGGATCAGATGGATATTAAAGATCGATGGCAAGGGTTGATTGATGAACCAATGCGGAGCTTAGAGCGGGTTTCTGTGGGAGCTTGGTCTATTTGGAATGATAGGAACAGCTTGGTTCATAATCAACAAATCCCTGACCCAGTGGAGCGATGTGATTGGATCACAAATTATCTAGAAGCTTTCTGGTCCGCGAATCCTAAAAACATTTCCCATATCCAGACAAAAGAAGATATAGTTAATCTCATAGTACAAGGTGAAGAGAGGATTATGCATACTGATGCTTCGTTTCAGGGGAATCTGAGTTCCTGTGGAATAGGTGTTGTCATACGTGATAAAATGGGATGTCTTGTGGCGGTGCAGTCCCTATCTTCCTTGGGTTGCATTTCGTCATTGGGTGCGGAAGCTATTGCGGTTTTAGAAGGGTTACGTTTGGCTAATAAGTTAAATATTCAGTGCCTAACTATTTTTTCAGACTCTTTGTCGCTGATCAATATGCTCAATGATGTGGTCCAGATGGAGGCTTGTGTTGCCGCAACGATTTGGGATATTAGAGCAATGAAAAGAACTTTCCAGAGAGTGAGTTTCGAGTATACGAAGCGTTGTTTTAATGGTCTTTCTCATAAGCTTGCAAGATCAGCGATTGTGTCACCTACTAATTTATGGGTAGGAAACTATCCTACATGGATAGAGACTGTATCGCTCAAAGAGCGAATGTTCTTTGTACCCCTATGGGGATCTGATGTTTTCGAATGTTTGGACTCTTTCAATCTCGGTCCAACATTAGTTCGAGCTTGTTTGGGTAGTTCAGTTCAGACTCATTCGATCACTTGTAGCTTGGACCCAAGTTCTTTTTGTTTGAGCTTGCTTTCAGATTGTTCAAATCCCATCGCCTATTGTTGGGAGCTCGTTAGGTTCACTTAG

Protein sequence

MLKSQETSLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQCSRAREIWTLIYPPMMRIQVDQMDIKDRWQGLIDEPMRSLERVSVGAWSIWNDRNSLVHNQQIPDPVERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEERIMHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANKLNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSHKLARSAIVSPTNLWVGNYPTWIETVSLKERMFFVPLWGSDVFECLDSFNLGPTLVRACLGSSVQTHSITCSLDPSSFCLSLLSDCSNPIAYCWELVRFT
Homology
BLAST of Lag0017604 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 179.5 bits (454), Expect = 5.8e-41
Identity = 110/332 (33.13%), Postives = 173/332 (52.11%), Query Frame = 0

Query: 2    LKSQETSLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICP 61
            LK   TS S   R ++ W  +WK+ VP+K+K F+W+S H  IPT  NL    +     C 
Sbjct: 1116 LKCNATSASTNYRGTQ-WNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACT 1175

Query: 62   LCHEDMETTDHALFQCSRAREIWTLIYPPMMRIQV-DQMDIKDRWQGLIDE-PMRSLERV 121
            +C +  E+  HA F C RAR+IW  ++P +  +   D +   + W  L ++   + L   
Sbjct: 1176 ICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLA 1235

Query: 122  SVGAWSIWNDRNSLVHNQQIPDPVE-RCDWITNYLEAFWSANPKNIS-HIQTKEDIVNLI 181
            ++  W IWNDRNSL+H +Q+  PVE +C+W+T +L++   A   N S   Q+    V   
Sbjct: 1236 AITGWGIWNDRNSLIHGKQV-SPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQY 1295

Query: 182  VQGEERI---MHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVL 241
             +    +   ++TDA+ +G  +S   G +IRD    LVA  S+     +S L AE   +L
Sbjct: 1296 WRPSSSVSLKLNTDAACRG--ASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCIL 1355

Query: 242  EGLRLANKLNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTK 301
            EGL+ A   N   L + SDSL  I ++ + +         + +I+A+   F  +SF ++ 
Sbjct: 1356 EGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSS 1415

Query: 302  RCFNGLSHKLARSAIVSP--TNLWVGNYPTWI 325
            R  N  +H LA+  I SP  T  W+ N+PTW+
Sbjct: 1416 RQCNRAAHGLAKWGITSPSATYAWLFNFPTWL 1443

BLAST of Lag0017604 vs. NCBI nr
Match: TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-33
Identity = 93/299 (31.10%), Postives = 150/299 (50.17%), Query Frame = 0

Query: 16  SRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALF 75
           S WW+ +WK N+P+K K F WK+F+ ++PT   L    V V   C +C++D E+  H L+
Sbjct: 114 SPWWRFLWKCNIPNKCKIFFWKAFNGWLPTFATLARRRVDVVDYCQVCNDDSESITHILW 173

Query: 76  QCSRAREIWTLIYPPMMRIQVDQMDIKDRWQGLIDEPMRSLERV-----SVGAWSIWNDR 135
            C+ A E+W      ++   V Q  +   +  +I    RS++ V      +G W +W +R
Sbjct: 174 SCNSAVEVWR----QLLGDDVIQRIVVSDFPSIILSLWRSVDSVVFNLLIIGYWRLWTNR 233

Query: 136 NSLVHNQQIPDPVERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEERIMHTDAS 195
           NS+VH        +   WI N+   F  AN  N   + + +       +GE +I + DAS
Sbjct: 234 NSVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQPSWKTPKRGEFKI-NCDAS 293

Query: 196 FQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANKLNIQCLTI 255
           FQ      G+GV+IRD  G  +A +S   L C S    EA A LEG+ LA  + +  + I
Sbjct: 294 FQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACLEGIHLAIDIGVSGVII 353

Query: 256 FSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSHKLARSAI 310
            SD+ S+I +L+D       + A I    A+  +   +S+   +R  N ++H +A+ A+
Sbjct: 354 ESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYVAVRREANSVAHCIAQHAL 407

BLAST of Lag0017604 vs. NCBI nr
Match: XP_030483669.1 (uncharacterized protein LOC115700241 [Cannabis sativa])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-31
Identity = 97/350 (27.71%), Postives = 152/350 (43.43%), Query Frame = 0

Query: 4   SQETSLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLC 63
           S ET+ S       WW K WK+ +PSK++ FVWK FHN +P    L   H+  +  CPLC
Sbjct: 586 SHETNTSTT--LDSWWTKFWKLKLPSKIRIFVWKVFHNALPVASELHRKHIAETPFCPLC 645

Query: 64  HEDMETTDHALFQCSRAREIW---TLIYPPMMRIQVDQMDIKDRWQGLIDEPMRSLERVS 123
               ET +HALF C+RA+++W    L++   M       D         +      E+  
Sbjct: 646 KVHKETLNHALFFCTRAKDVWRQSLLVFNFKMAASTTSADF--LLYVSANTSSTEFEKFL 705

Query: 124 VGAWSIWNDRNSLVHNQQIPDPVERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQG 183
           V  WSIW +RN+  HN+         D+ TNYL  + +A   +  +  +     +     
Sbjct: 706 VICWSIWFERNAEYHNKPSKKAAAVLDFATNYLLKYQNAQASSSHNAGSATSTASRASVT 765

Query: 184 EER-----------------IMHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCI 243
           +E                   +++DA+    L   GIG V+RD  G +VA  S    GC 
Sbjct: 766 QETPLPSPTALWTAPPLGKLKLNSDAACNKALGKIGIGAVVRDSFGVIVAALSKPIQGCF 825

Query: 244 SSLGAEAIAVLEGLRLANKLNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKR 303
                EA+A+   L+ A  L +    I +DSL ++  L       +     + D+  +  
Sbjct: 826 KPEEMEAVALAHSLKWAANLGLSINFIETDSLLVVQDLKIAHMCNSAFHLILNDVNYLVS 885

Query: 304 TFQRVSFEYTKRCFNGLSHKLARSAIVSPTNL-WVGNYPTWIETVSLKER 333
            F R    + KR  N  +  LA+ A+   T++ W+  +P  + TV +  R
Sbjct: 886 FFPRAQITHVKRSANTYADVLAKFALTVDTDVSWLEEFPPLLMTVIVPNR 931

BLAST of Lag0017604 vs. NCBI nr
Match: XP_030498035.1 (uncharacterized protein LOC115713693 [Cannabis sativa])

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-30
Identity = 95/334 (28.44%), Postives = 152/334 (45.51%), Query Frame = 0

Query: 2   LKSQETSLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICP 61
           ++S  TS  D+      WK  W + +PSK+K F W+   NF+P    L    V  S  C 
Sbjct: 263 MESASTSHKDL------WKLFWNLKLPSKIKIFAWRVIQNFLPVAAALYKKKVLTSAACS 322

Query: 62  LCHEDMETTDHALFQCSRAREIWTLIYPPMMRIQVDQM---DIKDRWQGLIDEPMRSLER 121
           LC +  E+  HALFQC  A+ +W     P+   +   M   D       L+ +  + LE 
Sbjct: 323 LCSQARESIGHALFQCKHAKAVWRHFNYPIDFNKAQNMVGGDYIFHLATLLSQ--QELEL 382

Query: 122 VSVGAWSIWNDRNSLVHNQQIPDPVERCDWITNYLEAFWSAN--PKNISHIQTKEDIVNL 181
           V V  W IW DRN + H +   D +   ++ TNY+E +  AN  P  ++   T   I  L
Sbjct: 383 VFVIMWVIWTDRNKINHGESRRDGMALANYATNYMENYHKANNRPTAVTEPVTPAQISTL 442

Query: 182 IVQG--------EERIMHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGA 241
             +G            ++ DA+        G+G ++R+  G ++A  S    GC  S   
Sbjct: 443 PTEGIPWKPPDMYGLKLNVDAAVNPTSKVLGVGAIVRNYKGEVMAAMSKLVQGCFRSDEM 502

Query: 242 EAIAVLEGLRLANKLNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRV 301
           EA A+   L   ++L +    + +D+L + N LN      +C +  I+D+R +  +F R+
Sbjct: 503 EAKALFHALNWISQLPLSVTLVETDALRVSNFLNHETWDLSCFSDIIFDVRCLLSSFSRI 562

Query: 302 SFEYTKRCFNGLSHKLARSAI-VSPTNLWVGNYP 322
              + KR  N  +H LA+ A+ +     W+G  P
Sbjct: 563 VISHVKRSANQAAHGLAKHALGLDVDTCWMGEIP 588

BLAST of Lag0017604 vs. NCBI nr
Match: XP_030508858.1 (uncharacterized protein LOC115723499 [Cannabis sativa])

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-30
Identity = 89/326 (27.30%), Postives = 148/326 (45.40%), Query Frame = 0

Query: 18   WWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQC 77
            WW K WK+ +PSK++ FVWK FHN IP    L   H+  +  CPLC +  ET  HALF C
Sbjct: 779  WWSKFWKLKLPSKLRIFVWKVFHNAIPVAAELHRKHIANTPYCPLCKQQQETIPHALFLC 838

Query: 78   SRAREIWTLIYPPM-MRIQVDQMDIKDRWQGLIDEPMRSLERVSVGAWSIWNDRNSLVHN 137
            +RA+E+W L    +  ++       +  +    +      E+     WSIW +RN+  H+
Sbjct: 839  TRAKEVWRLSSIKLNFKLAATSSAEEFLFYASDNTSTSDFEQFLTICWSIWYERNAEFHD 898

Query: 138  QQIPDPVERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEERI------------ 197
            +    P     + T+YL  + SA  +++S+      I +   + +               
Sbjct: 899  KSPKQPAAVLAFATDYLGKYQSAQAQSVSNNSAATSITHPASRSQVAASTDQWIAPLAGK 958

Query: 198  --MHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANK 257
              ++TDA+        G+G V+RD  G + A  S +  GC  +   EA A++  L+    
Sbjct: 959  FKLNTDAACNKASKIIGLGAVLRDSSGLIKAAFSKAIKGCYKAEEMEATALVHALQWLLN 1018

Query: 258  LNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSH 317
            L +    I +DSL ++  L       +   A + D+  +  +F R    + KR  N  + 
Sbjct: 1019 LGLTADIIETDSLLVVQGLKAASSCSSAFHAILNDVNYLVSSFPRAQITHVKRSANTYAD 1078

Query: 318  KLARSAIVSPTN-LWVGNYPTWIETV 328
             LA+ A+   T+  W+  +P  + TV
Sbjct: 1079 VLAKFALTVDTDCTWLEEFPPPLMTV 1104

BLAST of Lag0017604 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-41
Identity = 110/332 (33.13%), Postives = 173/332 (52.11%), Query Frame = 0

Query: 2    LKSQETSLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICP 61
            LK   TS S   R ++ W  +WK+ VP+K+K F+W+S H  IPT  NL    +     C 
Sbjct: 1116 LKCNATSASTNYRGTQ-WNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACT 1175

Query: 62   LCHEDMETTDHALFQCSRAREIWTLIYPPMMRIQV-DQMDIKDRWQGLIDE-PMRSLERV 121
            +C +  E+  HA F C RAR+IW  ++P +  +   D +   + W  L ++   + L   
Sbjct: 1176 ICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLA 1235

Query: 122  SVGAWSIWNDRNSLVHNQQIPDPVE-RCDWITNYLEAFWSANPKNIS-HIQTKEDIVNLI 181
            ++  W IWNDRNSL+H +Q+  PVE +C+W+T +L++   A   N S   Q+    V   
Sbjct: 1236 AITGWGIWNDRNSLIHGKQV-SPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQY 1295

Query: 182  VQGEERI---MHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVL 241
             +    +   ++TDA+ +G  +S   G +IRD    LVA  S+     +S L AE   +L
Sbjct: 1296 WRPSSSVSLKLNTDAACRG--ASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCIL 1355

Query: 242  EGLRLANKLNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTK 301
            EGL+ A   N   L + SDSL  I ++ + +         + +I+A+   F  +SF ++ 
Sbjct: 1356 EGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSS 1415

Query: 302  RCFNGLSHKLARSAIVSP--TNLWVGNYPTWI 325
            R  N  +H LA+  I SP  T  W+ N+PTW+
Sbjct: 1416 RQCNRAAHGLAKWGITSPSATYAWLFNFPTWL 1443

BLAST of Lag0017604 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 93/299 (31.10%), Postives = 150/299 (50.17%), Query Frame = 0

Query: 16  SRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALF 75
           S WW+ +WK N+P+K K F WK+F+ ++PT   L    V V   C +C++D E+  H L+
Sbjct: 114 SPWWRFLWKCNIPNKCKIFFWKAFNGWLPTFATLARRRVDVVDYCQVCNDDSESITHILW 173

Query: 76  QCSRAREIWTLIYPPMMRIQVDQMDIKDRWQGLIDEPMRSLERV-----SVGAWSIWNDR 135
            C+ A E+W      ++   V Q  +   +  +I    RS++ V      +G W +W +R
Sbjct: 174 SCNSAVEVWR----QLLGDDVIQRIVVSDFPSIILSLWRSVDSVVFNLLIIGYWRLWTNR 233

Query: 136 NSLVHNQQIPDPVERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEERIMHTDAS 195
           NS+VH        +   WI N+   F  AN  N   + + +       +GE +I + DAS
Sbjct: 234 NSVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQPSWKTPKRGEFKI-NCDAS 293

Query: 196 FQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANKLNIQCLTI 255
           FQ      G+GV+IRD  G  +A +S   L C S    EA A LEG+ LA  + +  + I
Sbjct: 294 FQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACLEGIHLAIDIGVSGVII 353

Query: 256 FSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSHKLARSAI 310
            SD+ S+I +L+D       + A I    A+  +   +S+   +R  N ++H +A+ A+
Sbjct: 354 ESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYVAVRREANSVAHCIAQHAL 407

BLAST of Lag0017604 vs. ExPASy TrEMBL
Match: A0A803PV88 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.1e-32
Identity = 91/297 (30.64%), Postives = 143/297 (48.15%), Query Frame = 0

Query: 18   WWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQC 77
            WWK  W +N+P KVKNF W+ +H+ +P  +NL          C  C   +ET  HAL  C
Sbjct: 844  WWKTFWNLNLPPKVKNFSWRVYHHILPVALNLFRRKTIPQPHCSFCKNPVETVTHALLDC 903

Query: 78   SRAREIWTLIYPPMMRIQVDQMDIKDRWQGLIDEPMR-SLERVSVGAWSIWNDRNSLVHN 137
            SRA +IW         +    +D+K+      D+  + SL  +    W+IWN RN  +  
Sbjct: 904  SRAAKIWKASPFRTFYLSNRYVDVKEFMLNGFDQLNKDSLSLLLSIMWAIWNSRNKKLFA 963

Query: 138  QQIPDPVERCDW----ITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEERIMHTDASFQ 197
                 P +   W    I++Y EA  + N    + I  + DI ++ V      ++TDA+  
Sbjct: 964  NSDMAPTDIVAWTHTFISDYQEALSNVNRYKSARILQRNDI-DVTVPVNSYRLNTDAALS 1023

Query: 198  GNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANKLNIQCLTIFS 257
               S  GIG V++D  GC+VA  ++ + G + S  AEA+A+  GL     + I    + +
Sbjct: 1024 TERSKLGIGAVVKDWKGCVVANLAIPAAGALQSTLAEALALKAGLNWCQHIKIPLALVET 1083

Query: 258  DSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSHKLARSAI 310
            DS  L++ +       + ++  + DIR     F  V   +T+R FNG +H LAR A+
Sbjct: 1084 DSKLLVDKVLGGKNDLSALSDIVTDIRNSLSFFPNVILRHTRRQFNGDAHNLARRAL 1139

BLAST of Lag0017604 vs. ExPASy TrEMBL
Match: A0A2N9GM07 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28341 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-31
Identity = 98/331 (29.61%), Postives = 169/331 (51.06%), Query Frame = 0

Query: 5    QETSLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCH 64
            +E+S  D  R    WK +W M +PSK++ F W++    +PTM  L+   + V+  CP C+
Sbjct: 793  EESSTGDPYRS--LWKTIWHMKLPSKIRIFAWRTCKQGLPTMEILQRRGLNVNPSCPRCN 852

Query: 65   EDMETTDHALFQCSRAREIWTL-IYPPMMRIQVDQMDIKDRWQGLIDEPM-RSLERVSVG 124
            E  E+  HA+++CS+ REIW L  +  ++ +QV   D+++    L+++ +   LE   + 
Sbjct: 853  EGAESISHAIWECSKIREIWRLGDFLDILPVQVS--DVREIILILMEKGLIGQLEFFWMV 912

Query: 125  AWSIWNDRNSLVHNQQIPDPVERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEE 184
            AW++W DRN  +HN Q     E         +      P+       +E+      +G  
Sbjct: 913  AWNVWWDRNKRIHNDQNDIEQEVFRRAKKMYDELRQLYPQPSGRHMIRENKWRAPEEGLF 972

Query: 185  RIMHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANK 244
            ++    A+F G     GIGVVIRD +G  +A QS  ++G  S+   EA+A+ EG  LA +
Sbjct: 973  KVNTDGATFAGG-RGAGIGVVIRDHIGSFLAGQSCRTIGSHSAEVIEALAIQEGCLLARE 1032

Query: 245  LNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSH 304
            L ++ + + SD+ ++++ +N        +   I +I  + R+F     EY+ R  N ++H
Sbjct: 1033 LGLRHIVVESDAQNIVHAINAEQHDGPNIGHIIANIGVLLRSFSTYKVEYSPRDSNVVAH 1092

Query: 305  KLARSA-IVSPTNLWVGNYPTWIETVSLKER 333
             LA+ A  +    LW  + P +I+    KER
Sbjct: 1093 LLAKYAKEIETRRLWRNDGPDFIQYQLKKER 1118

BLAST of Lag0017604 vs. ExPASy TrEMBL
Match: A0A803QH54 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-31
Identity = 95/323 (29.41%), Postives = 148/323 (45.82%), Query Frame = 0

Query: 8   SLSDVERQSRWWKKVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDM 67
           S S+    +RWWK  W  ++P KVKNF W++F++ +PT  NL    V  S  C  C   +
Sbjct: 445 SSSNTSFYNRWWKFFWHQSIPPKVKNFGWRTFYHILPTAFNLFRRKVVPSPSCSFCGCSL 504

Query: 68  ETTDHALFQCSRAREIWTLIYPPMMRIQVDQMDIKD-RWQGLIDEPMRSLERVSVGAWSI 127
           ET  HAL  CSRAR++W L       I     D+KD       D        +    WSI
Sbjct: 505 ETVTHALLDCSRARQVWKLSPLYHFYILHRHSDVKDLMLSAYTDLSTDDFSLLICTLWSI 564

Query: 128 WNDRNSLVHNQQIPDPVERCDWITNYLEAFWSANPKNI----SHIQTKEDIVNLIVQGEE 187
           W  RN  +      +  +   WI+ +L  +  A  K I    SH        N + +G  
Sbjct: 565 WEFRNKKLFRNTNSNAGDVVQWISAFLSQYKEAQLKRIDMVTSHQANVPTSANQVKEGSY 624

Query: 188 RIMHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANK 247
           + ++TDA+ Q      G+G V++D  G ++A  S+     I    AEA A+   L   + 
Sbjct: 625 Q-LYTDAAIQARNGKIGLGAVVKDWNGQVIAGLSVPMTANIQPALAEAWALRLALDWCSS 684

Query: 248 LNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSH 307
           + +    IFSD   L+  ++   +  + +A  +WDIR     F   S  YT R  N  +H
Sbjct: 685 VKLPLSIIFSDCQQLVGQVSSRKKDLSAMADVVWDIRNSLSHFPNASVTYTPRNNNIHAH 744

Query: 308 KLARSAI-VSPTNLWVGNYPTWI 325
           ++A+ A+ +    +W  N P+++
Sbjct: 745 QMAKGALGLDEELVWKNNSPSFL 766

BLAST of Lag0017604 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-17
Identity = 75/324 (23.15%), Postives = 134/324 (41.36%), Query Frame = 0

Query: 21  KVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQCSRA 80
           ++W + +  K+K+F+W++    + T   L T  +++   CP CH + E+ +HALF C  A
Sbjct: 161 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 220

Query: 81  REIWTLIYPPMMRIQVDQMDIKDRWQGLI----DEPMRSLERVSVG--AWSIWNDRNSLV 140
              W L    ++R Q+   D ++    ++    D  M    ++      W IW  RN++V
Sbjct: 221 TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVV 280

Query: 141 HNQQIPDP--------VERCDWITNYLEAFWSANPKNISHIQTKEDIVNLIVQGEERIMH 200
            N+    P         E  DW+        + +P       T++   N I        +
Sbjct: 281 FNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSP-------TRQIAENKIEWRNPPATY 340

Query: 201 T----DASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANK 260
                DA F         G +IR+  G  ++  S+      + L AE  A+L  L+    
Sbjct: 341 VKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWI 400

Query: 261 LNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSH 320
                + +  D  +LIN++N  +   + +A  + DI      F  + F + +R  N L+H
Sbjct: 401 RGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAH 460

Query: 321 KLAR-SAIVSPTNLWVGNYPTWIE 326
            LA+     S      G+ P W++
Sbjct: 461 VLAKYGCTYSTFYSGSGSLPIWLD 476

BLAST of Lag0017604 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-12
Identity = 68/303 (22.44%), Postives = 119/303 (39.27%), Query Frame = 0

Query: 22  VWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQCSRAR 81
           +WK++V  K+K+F+W+     + T   LR+ ++    IC  C  + ET  H +F C   +
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 82  EIWTLIYPPMMRIQVDQMDIKDRWQGLID----EPMRSLERVSVG--AWSIWNDRNSLVH 141
            +W      +          +D    LI     +   SL+R       W +W  RN  + 
Sbjct: 97  SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLF 156

Query: 142 NQQIPDP--------VERCDWI-----TNYLEAFWSANPKNISHIQTKEDIVNLIVQGEE 201
            Q+   P         +  +W+     T       + NP   S   + +   N   +G  
Sbjct: 157 QQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQ--WNPPPEGWV 216

Query: 202 RIMHTDASFQGNLSSCGIGVVIRDKMGCLVAVQSLSSLGCISSLGAEAIAVLEGLRLANK 261
           +        QG+  +   G  IR+  G +V   +        SL AEA+  L  L++   
Sbjct: 217 KCNFDSGYTQGSPYTRS-GWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWA 276

Query: 262 LNIQCLTIFSDSLSLINMLNDVVQMEACVAATIWDIRAMKRTFQRVSFEYTKRCFNGLSH 306
             ++ +   SDS SL+ ++N+  +  + +   I+DIR         S E+  R  N  + 
Sbjct: 277 HGLRYVWFESDSKSLVTLINN-GEDHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNSAAD 335

BLAST of Lag0017604 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-11
Identity = 31/123 (25.20%), Postives = 61/123 (49.59%), Query Frame = 0

Query: 21  KVWKMNVPSKVKNFVWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQCSRA 80
           K+WK+    K+K+F+WK     + T  NL+  H++    C  C ++ ET+ H  F C  A
Sbjct: 17  KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 81  REIWTLIYPPMMRIQVDQMDIKDRWQGLIDEPMRS----LERVSVG-AWSIWNDRNSLVH 139
           +++W     P   ++   + ++ + + L+   + +    L  +++   W +W  RN LV 
Sbjct: 77  QQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136

BLAST of Lag0017604 vs. TAIR 10
Match: AT4G10613.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.9e-08
Identity = 33/110 (30.00%), Postives = 54/110 (49.09%), Query Frame = 0

Query: 35  VWKSFHNFIPTMVNLRTHHVQVSGICPLCHEDMETTDHALFQCSRAREIWTLIYPPMMRI 94
           +W S  + +PT   L +  +Q+S +C LC + +ET DH +  C  +  IW ++    +R+
Sbjct: 1   MWISNLDRLPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMV-QARLRL 60

Query: 95  QVDQMDIKD---RWQGLIDEPMRSLERVSVG---AWSIWNDRNSLVHNQQ 139
           Q  Q  + +    W  L      S+ R  V      +IW  RN+L+HN Q
Sbjct: 61  QPVQFRVWESLLSWIKLSTASSPSIIRKLVAQATVCAIWKQRNNLLHNLQ 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.15.8e-4133.13uncharacterized protein LOC111024874 [Momordica charantia][more]
TXG50387.13.4e-3331.10hypothetical protein EZV62_022911 [Acer yangbiense][more]
XP_030483669.19.3e-3127.71uncharacterized protein LOC115700241 [Cannabis sativa][more]
XP_030498035.11.6e-3028.44uncharacterized protein LOC115713693 [Cannabis sativa][more]
XP_030508858.12.1e-3027.30uncharacterized protein LOC115723499 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX302.8e-4133.13uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5C7H0P01.6e-3331.10Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1[more]
A0A803PV889.1e-3230.64Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9GM073.4e-3129.61Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A803QH544.5e-3129.41Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09510.12.1e-1723.15Ribonuclease H-like superfamily protein [more]
AT2G02650.12.7e-1222.44Ribonuclease H-like superfamily protein [more]
AT3G25270.15.1e-1125.20Ribonuclease H-like superfamily protein [more]
AT4G10613.16.9e-0830.00RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 183..312
e-value: 3.7E-18
score: 67.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 187..308
e-value: 4.1E-22
score: 78.3
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 11..84
e-value: 1.4E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 10..260
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 10..260
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 187..306
e-value: 3.67303E-21
score: 86.214
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 184..313

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017604.1Lag0017604.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity