Lag0014600 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014600
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionclassical arabinogalactan protein 4
Locationchr12: 2518262 .. 2518711 (-)
RNA-Seq ExpressionLag0014600
SyntenyLag0014600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCACTCACCGCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGGCACCTTCGCCAACTCCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCGCAACACAGTCGCCGCCTCAGACCAAGCCCAGCACTCCACCGTCGTCTTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCCATTCCGCCGTCCGATCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTATCGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA

mRNA sequence

ATGCCTCACTCACCGCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGGCACCTTCGCCAACTCCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCGCAACACAGTCGCCGCCTCAGACCAAGCCCAGCACTCCACCGTCGTCTTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCCATTCCGCCGTCCGATCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTATCGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA

Coding sequence (CDS)

ATGCCTCACTCACCGCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGGCACCTTCGCCAACTCCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCGCAACACAGTCGCCGCCTCAGACCAAGCCCAGCACTCCACCGTCGTCTTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCCATTCCGCCGTCCGATCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTATCGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA

Protein sequence

MPHSPLLNALLAAALLLSAAALSPAPSPTPQAAPSPPWRWTPVTKPPPPATQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRLSIVGSVAIGAMALMV
Homology
BLAST of Lag0014600 vs. NCBI nr
Match: XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-27
Identity = 102/152 (67.11%), Postives = 112/152 (73.68%), Query Frame = 0

Query: 1   MPHSPLLNALLAAALLLSAAAL-SPAPSP----TPQAAPSPPWRWTPVTKPPPPATQSPP 60
           MPHS LLNALLAAALL SAAA  +PAPSP    TP A+PSPPWRWTP+TKPPP +T S  
Sbjct: 1   MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPPSSTPS-H 60

Query: 61  QTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQ-SPSPSSIPPSDLPPSWIGG 120
           ++KP TPP SSP P PSPTPV P   HHAP+  P S PLQ SPSPS  P     PSWI  
Sbjct: 61  ESKP-TPPPSSPPPTPSPTPVLPPHHHHAPTERPVSLPLQKSPSPSPSP----SPSWIAV 120

Query: 121 PPSEAPAPSKEKSNAFSNRLSIVGSVAIGAMA 147
           PP EAPAPSK KS+AF+NR S+V SVAI AMA
Sbjct: 121 PPPEAPAPSKAKSDAFNNRFSVVASVAIDAMA 146

BLAST of Lag0014600 vs. NCBI nr
Match: XP_022141995.1 (extensin-like [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 7.2e-21
Identity = 88/141 (62.41%), Postives = 98/141 (69.50%), Query Frame = 0

Query: 11  LAAALLLSAAAL-SPAPSPTPQAAPSPPWRWTPVTKPPPPATQSPPQTKPSTPPSSSPAP 70
           +AAALL SAAA   PAPSP+P A PSPPWRWTP  KPP P T S P   P   P SSPAP
Sbjct: 1   MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60

Query: 71  APSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSDLP-PSWIGGPPSEAPAPSKE 130
           +PSPT   VPPA P  AP +PP  P  QSP+P  + PP+  P PSWI GPP++A APSK 
Sbjct: 61  SPSPTTAVVPPAPPTAAPVSPP--PQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKH 120

Query: 131 KSNAFSNRLSIVGSVAIGAMA 147
           KSNA  NR S+VGSV IGAMA
Sbjct: 121 KSNALKNRFSLVGSVGIGAMA 139

BLAST of Lag0014600 vs. NCBI nr
Match: XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-20
Identity = 87/148 (58.78%), Postives = 98/148 (66.22%), Query Frame = 0

Query: 1   MPHSPLLNALLAAALLLSAAAL--SPAPSPTPQAAPSPPWRWTPVTKPPPPATQSPPQTK 60
           MPHS LLNALLAAALL SAAA+  SP+PSPTP A+ SPPWRW P+TKPP        +T+
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSE 120
           PSTPP       PSPT VPP + H  P  P A P   SPSPS        P+WI  PPSE
Sbjct: 61  PSTPP-------PSPTSVPPPAHHDEP--PTAQP--DSPSPS--------PTWIAEPPSE 120

Query: 121 APAPSKEKSNAFSNRLSIVGSVAIGAMA 147
           A +PSK KS+ F N  S+VGSVAIGAMA
Sbjct: 121 ALSPSKAKSDGFKNSFSMVGSVAIGAMA 129

BLAST of Lag0014600 vs. NCBI nr
Match: XP_008462882.1 (PREDICTED: classical arabinogalactan protein 4 [Cucumis melo] >KAA0061156.1 classical arabinogalactan protein 4 [Cucumis melo var. makuwa] >TYK29917.1 classical arabinogalactan protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0

Query: 1   MPHSPLLNALLAAALLLSAAALSPAPSPTPQAAPSPPWRWTPVTKP--------PPPATQ 60
           M  S LLN L  A LL+SAAA SPAPSP P +A SP W+WTP  +P        PP  T 
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60

Query: 61  SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
           SPP    + P+TPP  SP P+               SPT  PPA  SP HAPS     AP
Sbjct: 61  SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120

Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRLSIVGS 146
             +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NR +I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180

BLAST of Lag0014600 vs. NCBI nr
Match: XP_038877309.1 (vegetative cell wall protein gp1-like [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-05
Identity = 81/185 (43.78%), Postives = 95/185 (51.35%), Query Frame = 0

Query: 1   MPHSPLLNALLAAALLLSAAALSPAPSPTPQAAPSPPWRWTPVTKPP-------PPATQS 60
           M  S +L  L  A LL+SAAA SP PSP P    SP W+WTP  +PP       PP T S
Sbjct: 1   MASSTVLIVLTVALLLISAAANSPVPSPAP-GPESPAWKWTPSNEPPSSPPMAEPPMTTS 60

Query: 61  PPQ---TKPSTPPSSSPAP---AP-----------SPTPVPPA--SPHHAPS-----APP 120
           PP    + P+TPP  SP P   AP           SPT  PP   SP HAPS     AP 
Sbjct: 61  PPSPTISPPATPPEISPIPSSYAPTLPPKANPPTLSPTAQPPVVKSPSHAPSPAKTKAPA 120

Query: 121 ASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRLSIVGSV 146
            +P   SPSP+  P     P+  PPS  G      PS APAPSK+ +   +NR +I GSV
Sbjct: 121 PAPSKMSPSPAKAPKSSKAPASSPPSPNGMMEPPAPSVAPAPSKKDNGGAANRFAIGGSV 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887113.13.9e-2767.11anther-specific proline-rich protein APG-like [Benincasa hispida][more]
XP_022141995.17.2e-2162.41extensin-like [Momordica charantia][more]
XP_011659717.18.0e-2058.78vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot... [more]
XP_008462882.12.7e-0745.16PREDICTED: classical arabinogalactan protein 4 [Cucumis melo] >KAA0061156.1 clas... [more]
XP_038877309.11.5e-0543.78vegetative cell wall protein gp1-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014600.1Lag0014600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane