Lag0012184 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012184
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr1: 38346428 .. 38347528 (+)
RNA-Seq ExpressionLag0012184
SyntenyLag0012184
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTGAAACTTCTTCTTCTTCTACCCCATCATCTGCACCTCTCTCACAGTCGTTTGAAACTCCCTCAACACCTAACACCACTCCAGTAGTCACTCTGATTCCAGGCTCCGGAACAACACAACGCTTACCAATTCCAAATCCTCTGATTCAGCCTTCGACCAACCCTTCCACCTACCCTTTTGTTCCGCAAAATCAACCTCCAGTTTCTCCTCTACAACCTCAGTTTTTTACCCATCAAATCAGACCTACTTTCGGCCATTTTACCCCTCAAATTTCCCCGCCCACCTGCTGTGTATCCTCAATTTTTTCCTCCCCCAAATTTTCCTTCCAATCCTCAAGCCCCGTCACCTAATCTAGCATTATTTACCCCAAATCCCTACCCAACCTTGCCCCAACCTCTTGCCGTCAAGCTGAATGACAACAATTTTTGCTCTGGAAAAATCAGTTACTGAATGCGGTCTTAGCAAATGGACTTCATGGATTCCTTGATGGTTCAATCTCAGCTCCACCCAAGTTCTTGGATGATCATCAGCTTCAACCGAACCCTGATTTCATTTCCTGGGAAAGGTACAACCGTTTTATAATGTGCTGGATTTATTCGTCCCTCTCTGAAGAAAAGATGTGTGAGATTGTAAGTCTTGAAACTGCATATGATATCTGGAATTCTTTAAAAAAGTCGTATGATTCTAGAACCATTGCTAGGATTATGGGTCTTAAGTCTCAATTACAAAGGATTAAGAAAGATGGTTTTTCCGTCAGTCAATATCTGTCTCAAATTAAGGAGGTCACCGATAAGTTTGCTGCCATAGGGGAACCAATCTCTTATCGAGATCATTTAGCTCACATCCTTGATGGTCTTGGAAGTGAGTACAATGCTTTTGTCACTTCAATTCAGAACCGACCCGATAGCCCTGATTTAGAGGATGTTCGTAGTTTGTTTCTTGCTTACGAAGCTCGGTTGGAAAAACAAAGCAGTGTCGATCAGTTGAATCTTGTTCAAGCGAACCTCAGTAGCGTTCAATTACATAGTAACAACCGTCGTCCCTCTCCTCACCCTGTTCATTTTCCTTCAGCAGCTTCCCAGAGCTCCTTTTAA

mRNA sequence

ATGGCATCTGAAACTTCTTCTTCTTCTACCCCATCATCTGCACCTCTCTCACAGTCGTTTGAAACTCCCTCAACACCTAACACCACTCCAGTAGTCACTCTGATTCCAGGCTCCGGAACAACACAACGCTTACCAATTCCAAATCCTCTGATTCAGCCTTCGACCAACCCTTCCACCTACCCTTTTGTTCCGCAAAATCAACCTCCAGTTTCTCCTCTACAACCTCAGTTTTTTACCCATCAAATCAGACCTACTTTCGGCCATTTTACCCCTCAAATTTCCCCGCCCACCTGCTGTTTACTGAATGCGGTCTTAGCAAATGGACTTCATGGATTCCTTGATGGTTCAATCTCAGCTCCACCCAAGTTCTTGGATGATCATCAGCTTCAACCGAACCCTGATTTCATTTCCTGGGAAAGGTACAACCGTTTTATAATGTGCTGGATTTATTCGTCCCTCTCTGAAGAAAAGATGTGTGAGATTGTAAGTCTTGAAACTGCATATGATATCTGGAATTCTTTAAAAAAGTCGTATGATTCTAGAACCATTGCTAGGATTATGGGTCTTAAGTCTCAATTACAAAGGATTAAGAAAGATGGTTTTTCCGTCAGTCAATATCTGTCTCAAATTAAGGAGGTCACCGATAAGTTTGCTGCCATAGGGGAACCAATCTCTTATCGAGATCATTTAGCTCACATCCTTGATGGTCTTGGAAGTGAGTACAATGCTTTTGTCACTTCAATTCAGAACCGACCCGATAGCCCTGATTTAGAGGATGTTCGTAGTTTGTTTCTTGCTTACGAAGCTCGGTTGGAAAAACAAAGCAGTGTCGATCAGTTGAATCTTGTTCAAGCGAACCTCAGTAGCGTTCAATTACATAGTAACAACCGTCGTCCCTCTCCTCACCCTGTTCATTTTCCTTCAGCAGCTTCCCAGAGCTCCTTTTAA

Coding sequence (CDS)

ATGGCATCTGAAACTTCTTCTTCTTCTACCCCATCATCTGCACCTCTCTCACAGTCGTTTGAAACTCCCTCAACACCTAACACCACTCCAGTAGTCACTCTGATTCCAGGCTCCGGAACAACACAACGCTTACCAATTCCAAATCCTCTGATTCAGCCTTCGACCAACCCTTCCACCTACCCTTTTGTTCCGCAAAATCAACCTCCAGTTTCTCCTCTACAACCTCAGTTTTTTACCCATCAAATCAGACCTACTTTCGGCCATTTTACCCCTCAAATTTCCCCGCCCACCTGCTGTTTACTGAATGCGGTCTTAGCAAATGGACTTCATGGATTCCTTGATGGTTCAATCTCAGCTCCACCCAAGTTCTTGGATGATCATCAGCTTCAACCGAACCCTGATTTCATTTCCTGGGAAAGGTACAACCGTTTTATAATGTGCTGGATTTATTCGTCCCTCTCTGAAGAAAAGATGTGTGAGATTGTAAGTCTTGAAACTGCATATGATATCTGGAATTCTTTAAAAAAGTCGTATGATTCTAGAACCATTGCTAGGATTATGGGTCTTAAGTCTCAATTACAAAGGATTAAGAAAGATGGTTTTTCCGTCAGTCAATATCTGTCTCAAATTAAGGAGGTCACCGATAAGTTTGCTGCCATAGGGGAACCAATCTCTTATCGAGATCATTTAGCTCACATCCTTGATGGTCTTGGAAGTGAGTACAATGCTTTTGTCACTTCAATTCAGAACCGACCCGATAGCCCTGATTTAGAGGATGTTCGTAGTTTGTTTCTTGCTTACGAAGCTCGGTTGGAAAAACAAAGCAGTGTCGATCAGTTGAATCTTGTTCAAGCGAACCTCAGTAGCGTTCAATTACATAGTAACAACCGTCGTCCCTCTCCTCACCCTGTTCATTTTCCTTCAGCAGCTTCCCAGAGCTCCTTTTAA

Protein sequence

MASETSSSSTPSSAPLSQSFETPSTPNTTPVVTLIPGSGTTQRLPIPNPLIQPSTNPSTYPFVPQNQPPVSPLQPQFFTHQIRPTFGHFTPQISPPTCCLLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMCEIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQLNLVQANLSSVQLHSNNRRPSPHPVHFPSAASQSSF
Homology
BLAST of Lag0012184 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 310.8 bits (795), Expect = 1.3e-80
Identity = 166/279 (59.50%), Postives = 199/279 (71.33%), Query Frame = 0

Query: 45  PIPNPLIQPSTNPSTYPFVPQNQPPVSPLQPQFFTHQIRPTFGHFTPQISPPTCCLLNAV 104
           P PN L QP    S  PF    QP    L    F                     LLNAV
Sbjct: 6   PTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQ---------------LLNAV 65

Query: 105 LANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMCEIVSL 164
           +ANGL G+LDG+I  PP+FLD HQLQPNP + +WERYNR +MCWIYSSLSEEKM E+VSL
Sbjct: 66  IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 125

Query: 165 ETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAAIGEPI 224
           ET +DIW+SL + YDS+T ARIMGLK++LQ ++KDG SVSQYL++IKE+ DKFAA+GEP+
Sbjct: 126 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPL 185

Query: 225 SYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQLNLVQ 284
           SYRDHLAH+LDGLGSEYNAFVTSI NR DSP LEDVRSL LAYEARL+KQ++VDQLN+ Q
Sbjct: 186 SYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQ 245

Query: 285 ANLSSVQLHSNNRRPSP---HPVHF-------PSAASQS 314
           ANL ++ L  N++RP P    P H+       P +A+QS
Sbjct: 246 ANLVNLSLQHNSKRPPPKFSFPNHYKHSFPNSPISAAQS 269

BLAST of Lag0012184 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 198.4 bits (503), Expect = 9.5e-47
Identity = 99/187 (52.94%), Postives = 127/187 (67.91%), Query Frame = 0

Query: 100 LLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMC 159
           LLN ++ANGL  F+D   S+PPK+LD    Q NP+F+ W+R N+ +M WIYSSL+   + 
Sbjct: 56  LLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVG 115

Query: 160 EIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAA 219
           +IV   TA DIW SL   Y+S +IA +M L SQLQRIKK    +S+YLS++K V D+FA 
Sbjct: 116 QIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFAT 175

Query: 220 IGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQ 279
           IGEP+SYRD L  IL+GL  EY+ FVTSI NR D P L++V SL   YE RL ++S    
Sbjct: 176 IGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQN 235

Query: 280 LNLVQAN 287
           LN  QAN
Sbjct: 236 LNFPQAN 242

BLAST of Lag0012184 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 194.9 bits (494), Expect = 1.0e-45
Identity = 110/269 (40.89%), Postives = 168/269 (62.45%), Query Frame = 0

Query: 48  NPLIQ-PSTN-PSTYPFVPQNQPPVSPLQPQFFTHQIRPTFGH-FTPQISPPTCC----- 107
           NP IQ P TN P+    +   QPP+ PL        I P+    FT ++           
Sbjct: 15  NPTIQMPPTNIPNVQDQIIGAQPPLPPL-------PILPSMNQPFTIKLDADNYLIWKNQ 74

Query: 108 LLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMC 167
           LLN ++ANGL  F+DGS   PP+F D  +   N ++I+W+R+NR IM WIY+SL++  M 
Sbjct: 75  LLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMG 134

Query: 168 EIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAA 227
           +IV   +A++IW +L + Y S ++A+I  L+++LQ ++KDG +  +Y+ + K + +  AA
Sbjct: 135 QIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAA 194

Query: 228 IGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQ 287
           +GEP+S +DHL ++  GL  EYNAFVTSI  RPD+  LE++ SL L+YE RLE Q++  Q
Sbjct: 195 VGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNASAQ 254

Query: 288 LNLVQANLSSVQLHSNNRRPS-PHPV-HF 307
           L+ +QANL+ + ++    RP+  +PV HF
Sbjct: 255 LSSLQANLAHLNINKKPYRPNFSNPVGHF 276

BLAST of Lag0012184 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 182.2 bits (461), Expect = 7.0e-42
Identity = 110/278 (39.57%), Postives = 156/278 (56.12%), Query Frame = 0

Query: 2   ASETSSSSTPSSAPLSQSFETPSTPNTTPVVTLIPGSGTTQRLPIPNPLIQPSTNPSTYP 61
           +S T S+STP + P       P T N  P          +  +P PNP I    N S  P
Sbjct: 3   SSTTDSASTPPAPP-------PPTSNPLP----------SSSIPNPNPQI---LNTSPLP 62

Query: 62  FVPQ-NQPPVSPLQPQFFTHQIRPTFGHFTPQISPPTCCLLNAVLANGLHGFLDGSISAP 121
            +P  NQP    L    +                     LLN V+ANGL  FLDGS   P
Sbjct: 63  NMPSINQPLAVKLDDHNYIIWKEQ---------------LLNIVIANGLEEFLDGSRVCP 122

Query: 122 PKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMCEIVSLETAYDIWNSLKKSYDS 181
           P+FLD  Q Q NP+F SW+RYNR +M WIY+S++E  + +IV   +A  IW +L++ Y +
Sbjct: 123 PRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAA 182

Query: 182 RTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAAIGEPISYRDHLAHILDGLGSE 241
            + A +  L++ LQ IKK+G +   Y+ + + + +  A+IGEP++Y DHL + L GLG +
Sbjct: 183 ASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRD 242

Query: 242 YNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVD 279
           YN FVTSIQ++   P +E+V SL L+Y+ARLE+QS+ D
Sbjct: 243 YNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

BLAST of Lag0012184 vs. NCBI nr
Match: RVX14312.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 179.9 bits (455), Expect = 3.5e-41
Identity = 83/199 (41.71%), Postives = 136/199 (68.34%), Query Frame = 0

Query: 100 LLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMC 159
           +LN ++ANGL   + G I AP +FL D +   NP++  W+R NR +MCWIYSSL+E  M 
Sbjct: 45  MLNIIIANGLEEMIHGKIPAPSRFLGDSE-NINPEYSIWQRQNRLVMCWIYSSLTEGVMA 104

Query: 160 EIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAA 219
           +I+ L+TA +IW +L+K + + + ARIM L+ QLQ  KK G S+ +YL +IK + D   A
Sbjct: 105 QIIGLDTASEIWTALEKIFSAASKARIMQLRFQLQTTKKRGLSMMEYLLKIKSIVDNLLA 164

Query: 220 IGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQ 279
           IGE I+ +D + ++L GLG+EYN+FV ++ +  +   LE++ S+ L +E +LE+Q   ++
Sbjct: 165 IGENITEQDRILYLLAGLGAEYNSFVITVTSGHEPLSLEEIHSMLLTHENQLEQQHITEE 224

Query: 280 LNLVQANLSSVQLHSNNRR 299
            NL+QAN++++ +  +N++
Sbjct: 225 TNLLQANITTMNIQGHNKK 242

BLAST of Lag0012184 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-15
Identity = 44/169 (26.04%), Postives = 85/169 (50.30%), Query Frame = 0

Query: 109 LHGFLDGSISAPPKFL-DDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMCEIVSLETA 168
           L GFLDGS + PP  +  D   + NPD+  W+R ++ I   +  ++S      +    TA
Sbjct: 47  LAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTA 106

Query: 169 YDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAAIGEPISYR 228
             IW +L+K Y + +   +  L++QL++  K   ++  Y+  +    D+ A +G+P+ + 
Sbjct: 107 AQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHD 166

Query: 229 DHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSS 277
           + +  +L+ L  EY   +  I  +   P L ++    L +E+++   SS
Sbjct: 167 EQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSS 215

BLAST of Lag0012184 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 6.3e-81
Identity = 166/279 (59.50%), Postives = 199/279 (71.33%), Query Frame = 0

Query: 45  PIPNPLIQPSTNPSTYPFVPQNQPPVSPLQPQFFTHQIRPTFGHFTPQISPPTCCLLNAV 104
           P PN L QP    S  PF    QP    L    F                     LLNAV
Sbjct: 6   PTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQ---------------LLNAV 65

Query: 105 LANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMCEIVSL 164
           +ANGL G+LDG+I  PP+FLD HQLQPNP + +WERYNR +MCWIYSSLSEEKM E+VSL
Sbjct: 66  IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 125

Query: 165 ETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAAIGEPI 224
           ET +DIW+SL + YDS+T ARIMGLK++LQ ++KDG SVSQYL++IKE+ DKFAA+GEP+
Sbjct: 126 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPL 185

Query: 225 SYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQLNLVQ 284
           SYRDHLAH+LDGLGSEYNAFVTSI NR DSP LEDVRSL LAYEARL+KQ++VDQLN+ Q
Sbjct: 186 SYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQ 245

Query: 285 ANLSSVQLHSNNRRPSP---HPVHF-------PSAASQS 314
           ANL ++ L  N++RP P    P H+       P +A+QS
Sbjct: 246 ANLVNLSLQHNSKRPPPKFSFPNHYKHSFPNSPISAAQS 269

BLAST of Lag0012184 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.6e-47
Identity = 99/187 (52.94%), Postives = 127/187 (67.91%), Query Frame = 0

Query: 100 LLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMC 159
           LLN ++ANGL  F+D   S+PPK+LD    Q NP+F+ W+R N+ +M WIYSSL+   + 
Sbjct: 56  LLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVG 115

Query: 160 EIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAA 219
           +IV   TA DIW SL   Y+S +IA +M L SQLQRIKK    +S+YLS++K V D+FA 
Sbjct: 116 QIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFAT 175

Query: 220 IGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQ 279
           IGEP+SYRD L  IL+GL  EY+ FVTSI NR D P L++V SL   YE RL ++S    
Sbjct: 176 IGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQN 235

Query: 280 LNLVQAN 287
           LN  QAN
Sbjct: 236 LNFPQAN 242

BLAST of Lag0012184 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.1e-46
Identity = 110/269 (40.89%), Postives = 168/269 (62.45%), Query Frame = 0

Query: 48  NPLIQ-PSTN-PSTYPFVPQNQPPVSPLQPQFFTHQIRPTFGH-FTPQISPPTCC----- 107
           NP IQ P TN P+    +   QPP+ PL        I P+    FT ++           
Sbjct: 15  NPTIQMPPTNIPNVQDQIIGAQPPLPPL-------PILPSMNQPFTIKLDADNYLIWKNQ 74

Query: 108 LLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMC 167
           LLN ++ANGL  F+DGS   PP+F D  +   N ++I+W+R+NR IM WIY+SL++  M 
Sbjct: 75  LLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMG 134

Query: 168 EIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAA 227
           +IV   +A++IW +L + Y S ++A+I  L+++LQ ++KDG +  +Y+ + K + +  AA
Sbjct: 135 QIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAA 194

Query: 228 IGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVDQ 287
           +GEP+S +DHL ++  GL  EYNAFVTSI  RPD+  LE++ SL L+YE RLE Q++  Q
Sbjct: 195 VGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNASAQ 254

Query: 288 LNLVQANLSSVQLHSNNRRPS-PHPV-HF 307
           L+ +QANL+ + ++    RP+  +PV HF
Sbjct: 255 LSSLQANLAHLNINKKPYRPNFSNPVGHF 276

BLAST of Lag0012184 vs. ExPASy TrEMBL
Match: A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 103/283 (36.40%), Postives = 163/283 (57.60%), Query Frame = 0

Query: 45  PIPNPLIQPSTNPSTYPFVPQNQPPVSPLQPQFFTHQIRPTFGHFTPQISPP-------- 104
           PI NP I  + NP+T    P +    SP  P        P F  F   IS          
Sbjct: 21  PIQNPTITNTQNPNTTAAPPISASSSSPSLP--------PNFSSFNQTISVKLDDTNYLV 80

Query: 105 -TCCLLNAVLANGLHGFLDGSISAPPKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSE 164
               + N ++ANGL G++DG+++   +F +    Q +P F +W RYN+ +M W+Y+SLS+
Sbjct: 81  WRMQMQNIIIANGLEGYIDGTVACSAQFPNSTSSQVDPAFTTWHRYNQLLMSWLYASLSD 140

Query: 165 EKMCEIVSLETAYDIWNSLKKSYDSRTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTD 224
             + +IV   TA +IW SL+++Y + + AR    +  LQ +KKD  + S YL ++K + +
Sbjct: 141 SMLGQIVGFTTATEIWVSLERTYSATSFARSFDFRMALQNLKKDRLNASAYLQKLKTLCN 200

Query: 225 KFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQS 284
             A++G+PIS ++HL ++L+GLG EYNAFVT I  RP  P +E+V +L L+YEARLE+Q+
Sbjct: 201 TLASVGDPISSQEHLTYLLNGLGLEYNAFVTPILARPVKPTIEEVHALLLSYEARLERQN 260

Query: 285 SVDQLNLVQANLSSVQL-----HSNNRRPSPHPVHFPSAASQS 314
           +    + +QAN +++        S++++PS  P  FPS   Q+
Sbjct: 261 AAASPSSLQANFANLSFPKQRPKSSSQQPSSQP-RFPSHPQQN 294

BLAST of Lag0012184 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.4e-42
Identity = 110/278 (39.57%), Postives = 156/278 (56.12%), Query Frame = 0

Query: 2   ASETSSSSTPSSAPLSQSFETPSTPNTTPVVTLIPGSGTTQRLPIPNPLIQPSTNPSTYP 61
           +S T S+STP + P       P T N  P          +  +P PNP I    N S  P
Sbjct: 3   SSTTDSASTPPAPP-------PPTSNPLP----------SSSIPNPNPQI---LNTSPLP 62

Query: 62  FVPQ-NQPPVSPLQPQFFTHQIRPTFGHFTPQISPPTCCLLNAVLANGLHGFLDGSISAP 121
            +P  NQP    L    +                     LLN V+ANGL  FLDGS   P
Sbjct: 63  NMPSINQPLAVKLDDHNYIIWKEQ---------------LLNIVIANGLEEFLDGSRVCP 122

Query: 122 PKFLDDHQLQPNPDFISWERYNRFIMCWIYSSLSEEKMCEIVSLETAYDIWNSLKKSYDS 181
           P+FLD  Q Q NP+F SW+RYNR +M WIY+S++E  + +IV   +A  IW +L++ Y +
Sbjct: 123 PRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAA 182

Query: 182 RTIARIMGLKSQLQRIKKDGFSVSQYLSQIKEVTDKFAAIGEPISYRDHLAHILDGLGSE 241
            + A +  L++ LQ IKK+G +   Y+ + + + +  A+IGEP++Y DHL + L GLG +
Sbjct: 183 ASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRD 242

Query: 242 YNAFVTSIQNRPDSPDLEDVRSLFLAYEARLEKQSSVD 279
           YN FVTSIQ++   P +E+V SL L+Y+ARLE+QS+ D
Sbjct: 243 YNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.3e-8059.50uncharacterized protein LOC111022315 [Momordica charantia][more]
RVW69807.19.5e-4752.94Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
PON47862.11.0e-4540.89hypothetical protein TorRG33x02_321990 [Trema orientale][more]
GFY85402.17.0e-4239.57hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
RVX14312.13.5e-4141.71Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Q94HW21.5e-1526.04Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DQX76.3e-8159.50uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A438GC624.6e-4752.94Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A2P5BGF85.1e-4640.89Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... [more]
A0A803NL561.5e-4236.40Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J0EGI53.4e-4239.57Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 139..272
e-value: 5.9E-24
score: 84.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..315
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 98..300
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 98..300

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012184.1Lag0012184.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding