Lag0005533 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGCAGAAAAATATGGTTTTTGATGACATTGCTTATTCACTGATTGTTTATGCTAAAGTAAAAATTGGGATTATAACTTATGCATTGGAAGTGTTTGAAGAAATGACCAAAAGAGGGTTTCAAGCAAATTCTTTCATTTATACCTTGTTCATTGGTGCCCATTGTAGAGAGGGAAAGATTGAGGAAGCTCATTGCTTGATGCAAGAGATGGAAAACATAGGTTGGAAGCCATATCCTGAAACCTTCAATCTTCTCATTGAAGGGTCTGTTTCGTCCGGAGTTCAATATTTATGTTCATGA ATGTTGCAGAAAAATATGGTTTTTGATGACATTGCTTATTCACTGATTGTTTATGCTAAAGTAAAAATTGGGATTATAACTTATGCATTGGAAGTGTTTGAAGAAATGACCAAAAGAGGGTTTCAAGCAAATTCTTTCATTTATACCTTGTTCATTGGTGCCCATTGTAGAGAGGGAAAGATTGAGGAAGCTCATTGCTTGATGCAAGAGATGGAAAACATAGGTTGGAAGCCATATCCTGAAACCTTCAATCTTCTCATTGAAGGGTCTGTTTCGTCCGGAGTTCAATATTTATGTTCATGA ATGTTGCAGAAAAATATGGTTTTTGATGACATTGCTTATTCACTGATTGTTTATGCTAAAGTAAAAATTGGGATTATAACTTATGCATTGGAAGTGTTTGAAGAAATGACCAAAAGAGGGTTTCAAGCAAATTCTTTCATTTATACCTTGTTCATTGGTGCCCATTGTAGAGAGGGAAAGATTGAGGAAGCTCATTGCTTGATGCAAGAGATGGAAAACATAGGTTGGAAGCCATATCCTGAAACCTTCAATCTTCTCATTGAAGGGTCTGTTTCGTCCGGAGTTCAATATTTATGTTCATGA MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSGVQYLCS Homology
BLAST of Lag0005533 vs. NCBI nr
Match: XP_038875410.1 (pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Benincasa hispida] >XP_038875411.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Benincasa hispida]) HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37 Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of Lag0005533 vs. NCBI nr
Match: XP_031740872.1 (pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucumis sativus] >KGN51057.1 hypothetical protein Csa_008589 [Cucumis sativus]) HSP 1 Score: 160.2 bits (404), Expect = 9.1e-36 Identity = 78/94 (82.98%), Postives = 82/94 (87.23%), Query Frame = 0
BLAST of Lag0005533 vs. NCBI nr
Match: XP_023550461.1 (pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 157.9 bits (398), Expect = 4.5e-35 Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 0
BLAST of Lag0005533 vs. NCBI nr
Match: XP_022141355.1 (pentatricopeptide repeat-containing protein At1g66345, mitochondrial isoform X1 [Momordica charantia]) HSP 1 Score: 157.5 bits (397), Expect = 5.9e-35 Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Lag0005533 vs. NCBI nr
Match: XP_022141356.1 (pentatricopeptide repeat-containing protein At1g66345, mitochondrial isoform X2 [Momordica charantia]) HSP 1 Score: 157.5 bits (397), Expect = 5.9e-35 Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Lag0005533 vs. ExPASy Swiss-Prot
Match: Q3ECH5 (Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g66345 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 5.0e-21 Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 0
BLAST of Lag0005533 vs. ExPASy Swiss-Prot
Match: Q9SAK0 (Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=EMB2217 PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 5.8e-09 Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Lag0005533 vs. ExPASy Swiss-Prot
Match: Q8S8P6 (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX=3702 GN=At2g32630 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08 Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = 0
BLAST of Lag0005533 vs. ExPASy Swiss-Prot
Match: Q9FIT7 (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08 Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 0
BLAST of Lag0005533 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08 Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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