IVF0021934 (gene) Melon (IVF77) v1

Overview
NameIVF0021934
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSerine/threonine-protein kinase AFC2
Locationchr06: 3185704 .. 3185904 (-)
RNA-Seq ExpressionIVF0021934
SyntenyIVF0021934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACTGTGTGTATGCTCAGAGAGGAATATGTTGTGGGAAAGAGATTGAGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAAATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCTGCCGAGAAGATGACAAAGATGGGAATTACATCTTTGCACTTGGAGAAAATTTAA

mRNA sequence

ATGGGTGACTGTGTGTATGCTCAGAGAGGAATATGTTGTGGGAAAGAGATTGAGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAAATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCTGCCGAGAAGATGACAAAGATGGGAATTACATCTTTGCACTTGGAGAAAATTTAA

Coding sequence (CDS)

ATGGGTGACTGTGTGTATGCTCAGAGAGGAATATGTTGTGGGAAAGAGATTGAGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAAATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCTGCCGAGAAGATGACAAAGATGGGAATTACATCTTTGCACTTGGAGAAAATTTAA

Protein sequence

MGDCVYAQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMGITSLHLEKI
Homology
[Close]
BLAST of IVF0021934 vs. ExPASy Swiss-Prot
Match: P51567 (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-08
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ G+ CG+EI NI SFAS+ APS++SS+ L VKGVARNGSPP  +  K G
Sbjct: 35 AQVGMFCGQEIGNISSFASSGAPSDNSSS-LCVKGVARNGSPPWREDDKDG 84

[Close]
BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A5A7UP87 (Serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004120 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A0A0LTN5 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G048950 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A1S3AXH4 (serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483972 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A6J1KKP8 (serine/threonine-protein kinase AFC2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495446 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI N+PSFAS+RAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANMPSFASSRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A6J1C5J1 (serine/threonine-protein kinase AFC2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008590 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI N+PSFAS+RAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANMPSFASSRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. NCBI nr
Match: XP_008439081.1 (PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo] >KAA0055279.1 serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo var. makuwa] >TYJ99202.1 serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.64e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. NCBI nr
Match: XP_038894261.1 (serine/threonine-protein kinase AFC2 isoform X1 [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 1.64e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. NCBI nr
Match: XP_004152497.1 (serine/threonine-protein kinase AFC2 isoform X1 [Cucumis sativus] >KGN64354.1 hypothetical protein Csa_013927 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.64e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. NCBI nr
Match: KAG7012282.1 (Serine/threonine-protein kinase AFC2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 2.71e-17
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI N+PSFAS++APS+HSS+PLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIGNMPSFASSKAPSDHSSDPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. NCBI nr
Match: XP_023001260.1 (serine/threonine-protein kinase AFC2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 1.52e-16
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI N+PSFAS+RAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANMPSFASSRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]
BLAST of IVF0021934 vs. TAIR 10
Match: AT4G24740.1 (FUS3-complementing gene 2 )

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-09
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ G+ CG+EI NI SFAS+ APS++SS+ L VKGVARNGSPP  +  K G
Sbjct: 35 AQVGMFCGQEIGNISSFASSGAPSDNSSS-LCVKGVARNGSPPWREDDKDG 84

The following BLAST results are available for this feature:
BLAST of IVF0021934 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P515679.4e-0862.75Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=... [more]
BLAST of IVF0021934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UP871.2e-1380.39Serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0LTN51.2e-1380.39Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G048... [more]
A0A1S3AXH41.2e-1380.39serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1KKP87.7e-1376.47serine/threonine-protein kinase AFC2-like isoform X1 OS=Cucurbita maxima OX=3661... [more]
A0A6J1C5J17.7e-1376.47serine/threonine-protein kinase AFC2 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of IVF0021934 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439081.11.64e-1780.39PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo] >KAA00... [more]
XP_038894261.11.64e-1780.39serine/threonine-protein kinase AFC2 isoform X1 [Benincasa hispida][more]
XP_004152497.11.64e-1780.39serine/threonine-protein kinase AFC2 isoform X1 [Cucumis sativus] >KGN64354.1 hy... [more]
KAG7012282.12.71e-1772.55Serine/threonine-protein kinase AFC2 [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_023001260.11.52e-1676.47serine/threonine-protein kinase AFC2-like isoform X1 [Cucurbita maxima][more]
BLAST of IVF0021934 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24740.16.7e-0962.75FUS3-complementing gene 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021934.1IVF0021934.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity