IVF0021934 (gene) Melon (IVF77) v1

Overview


Name	IVF0021934
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Serine/threonine-protein kinase AFC2
Location	chr06: 3185704 .. 3185904 (-)
RNA-Seq Expression	IVF0021934
Synteny	IVF0021934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACTGTGTGTATGCTCAGAGAGGAATATGTTGTGGGAAAGAGATTGAGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAAATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCTGCCGAGAAGATGACAAAGATGGGAATTACATCTTTGCACTTGGAGAAAATTTAA

mRNA sequence

ATGGGTGACTGTGTGTATGCTCAGAGAGGAATATGTTGTGGGAAAGAGATTGAGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAAATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCTGCCGAGAAGATGACAAAGATGGGAATTACATCTTTGCACTTGGAGAAAATTTAA

Coding sequence (CDS)

ATGGGTGACTGTGTGTATGCTCAGAGAGGAATATGTTGTGGGAAAGAGATTGAGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAAATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCTGCCGAGAAGATGACAAAGATGGGAATTACATCTTTGCACTTGGAGAAAATTTAA

Protein sequence

MGDCVYAQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMGITSLHLEKI

Homology

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BLAST of IVF0021934 vs. ExPASy Swiss-Prot
Match: P51567 (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-08
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ G+ CG+EI NI SFAS+ APS++SS+ L VKGVARNGSPP  +  K G
Sbjct: 35 AQVGMFCGQEIGNISSFASSGAPSDNSSS-LCVKGVARNGSPPWREDDKDG 84

[Close]

BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A5A7UP87 (Serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004120 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A0A0LTN5 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G048950 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A1S3AXH4 (serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483972 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A6J1KKP8 (serine/threonine-protein kinase AFC2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495446 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI N+PSFAS+RAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANMPSFASSRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. ExPASy TrEMBL
Match: A0A6J1C5J1 (serine/threonine-protein kinase AFC2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008590 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ GICCG+EI N+PSFAS+RAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANMPSFASSRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. NCBI nr
Match: XP_008439081.1 (PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo] >KAA0055279.1 serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo var. makuwa] >TYJ99202.1 serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.64e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. NCBI nr
Match: XP_038894261.1 (serine/threonine-protein kinase AFC2 isoform X1 [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 1.64e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. NCBI nr
Match: XP_004152497.1 (serine/threonine-protein kinase AFC2 isoform X1 [Cucumis sativus] >KGN64354.1 hypothetical protein Csa_013927 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.64e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI NIPSFASTRAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. NCBI nr
Match: KAG7012282.1 (Serine/threonine-protein kinase AFC2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 2.71e-17
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI N+PSFAS++APS+HSS+PLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIGNMPSFASSKAPSDHSSDPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. NCBI nr
Match: XP_023001260.1 (serine/threonine-protein kinase AFC2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 1.52e-16
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 57
          AQ GICCG+EI N+PSFAS+RAPS+HSSNPLFVKGVARNGSPP  +  K G
Sbjct: 35 AQVGICCGQEIANMPSFASSRAPSDHSSNPLFVKGVARNGSPPWREDDKDG 85

[Close]

BLAST of IVF0021934 vs. TAIR 10
Match: AT4G24740.1 (FUS3-complementing gene 2 )

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-09
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 7  AQRGICCGKEIENIPSFASTRAPSNHSSNPLFVKGVARNGSPPAEKMTKMG 58
          AQ G+ CG+EI NI SFAS+ APS++SS+ L VKGVARNGSPP  +  K G
Sbjct: 35 AQVGMFCGQEIGNISSFASSGAPSDNSSS-LCVKGVARNGSPPWREDDKDG 84

The following BLAST results are available for this feature:

BLAST of IVF0021934 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51567	9.4e-08	62.75	Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=...	[more]

BLAST of IVF0021934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UP87	1.2e-13	80.39	Serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LTN5	1.2e-13	80.39	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G048...	[more]
A0A1S3AXH4	1.2e-13	80.39	serine/threonine-protein kinase AFC2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1KKP8	7.7e-13	76.47	serine/threonine-protein kinase AFC2-like isoform X1 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1C5J1	7.7e-13	76.47	serine/threonine-protein kinase AFC2 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of IVF0021934 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439081.1	1.64e-17	80.39	PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_038894261.1	1.64e-17	80.39	serine/threonine-protein kinase AFC2 isoform X1 [Benincasa hispida]	[more]
XP_004152497.1	1.64e-17	80.39	serine/threonine-protein kinase AFC2 isoform X1 [Cucumis sativus] >KGN64354.1 hy...	[more]
KAG7012282.1	2.71e-17	72.55	Serine/threonine-protein kinase AFC2 [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023001260.1	1.52e-16	76.47	serine/threonine-protein kinase AFC2-like isoform X1 [Cucurbita maxima]	[more]

BLAST of IVF0021934 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24740.1	6.7e-09	62.75	FUS3-complementing gene 2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021934.1	IVF0021934.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity