IVF0016221 (gene) Melon (IVF77) v1

Overview
NameIVF0016221
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 23177688 .. 23178146 (+)
RNA-Seq ExpressionIVF0016221
SyntenyIVF0016221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAGCAACAGAGAGGGGGAAGAAAAACTAAGAACAAAATGGAATGTGAAAGGGAAAATAGAGATGGAAGGAACTGGAAAACCCTAGATCAGAAAAGCAAAGCGCCGGTTTATCGGACCCCGATCCGAATTTGTGTTGCCGGTTGAGAGAGTGAGAAAGAAAACTGGAAAAGGAAAAAAAAAAAAAACGGATGAGGGCAAATAAAAAAATGGGGCGAAAGAGGGGTATTTATATGGAGGCTACGGTTATAAAGCACACGTCATCAAAGAAGGGGTTTGGGTTTATCCTTCTTTGAGGGTGTACACGTGGCGCCTTTGCTTTAGCCCAATTACCGGTTGTACAGTTTTGCCCGCGCTAA

mRNA sequence

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAATCAGAAAAGCAAAGCGCCGGTTTATCGGACCCCGATCCGAATTTGTGTTGCCGGTTGAGAGAGTGAGAAAGAAAACTGGAAAAGGAAAAAAAAAAAAAACGGATGAGGGGTGTACACGTGGCGCCTTTGCTTTAGCCCAATTACCGGTTGTACAGTTTTGCCCGCGCTAA

Coding sequence (CDS)

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAATCAGAAAAGCAAAGCGCCGGTTTATCGGACCCCGATCCGAATTTGTGTTGCCGGTTGAGAGAGTGAGAAAGAAAACTGGAAAAGGAAAAAAAAAAAAAACGGATGAGGGGTGTACACGTGGCGCCTTTGCTTTAGCCCAATTACCGGTTGTACAGTTTTGCCCGCGCTAA

Protein sequence

MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAIRKAKRRFIGPRSEFVLPVERVRKKTGKGKKKKTDEGCTRGAFALAQLPVVQFCPR
Homology
[Close]
BLAST of IVF0016221 vs. ExPASy TrEMBL
Match: A0A0A0LU87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050010 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 71/118 (60.17%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAI-----------------------R 60
           MNEQPKENTWRSGILLCLARISSQDRRHETDLQIA                        +
Sbjct: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60

Query: 61  KAK-RRFIGPRSEFV---LPVERVRKKTGKGKKKKTDEGCTRGAFALAQLPVVQFCPR 92
           K+K RRFIGPRSEFV   LPVER              E CTRGA ALAQLPVVQF PR
Sbjct: 61  KSKARRFIGPRSEFVWFLLPVER--------------ESCTRGAIALAQLPVVQFSPR 104

[Close]
BLAST of IVF0016221 vs. NCBI nr
Match: KGN64362.1 (hypothetical protein Csa_013888 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 1.31e-29
Identity = 71/118 (60.17%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAI-----------------------R 60
           MNEQPKENTWRSGILLCLARISSQDRRHETDLQIA                        +
Sbjct: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60

Query: 61  KAK-RRFIGPRSEFV---LPVERVRKKTGKGKKKKTDEGCTRGAFALAQLPVVQFCPR 91
           K+K RRFIGPRSEFV   LPVER              E CTRGA ALAQLPVVQF PR
Sbjct: 61  KSKARRFIGPRSEFVWFLLPVER--------------ESCTRGAIALAQLPVVQFSPR 104

The following BLAST results are available for this feature:
BLAST of IVF0016221 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0016221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU871.9e-2260.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050010 PE=4 SV=1[more]
BLAST of IVF0016221 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64362.11.31e-2960.17hypothetical protein Csa_013888 [Cucumis sativus][more]
BLAST of IVF0016221 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016221.1IVF0016221.1mRNA