IVF0016221.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0016221.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 23177688 .. 23178146 (+)
Sequence length	276
RNA-Seq Expression	IVF0016221.1
Synteny	IVF0016221.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAGCAACAGAGAGGGGGAAGAAAAACTAAGAACAAAATGGAATGTGAAAGGGAAAATAGAGATGGAAGGAACTGGAAAACCCTAGATCAGAAAAGCAAAGCGCCGGTTTATCGGACCCCGATCCGAATTTGTGTTGCCGGTTGAGAGAGTGAGAAAGAAAACTGGAAAAGGAAAAAAAAAAAAAACGGATGAGGGCAAATAAAAAAATGGGGCGAAAGAGGGGTATTTATATGGAGGCTACGGTTATAAAGCACACGTCATCAAAGAAGGGGTTTGGGTTTATCCTTCTTTGAGGGTGTACACGTGGCGCCTTTGCTTTAGCCCAATTACCGGTTGTACAGTTTTGCCCGCGCTAA

mRNA sequence

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAATCAGAAAAGCAAAGCGCCGGTTTATCGGACCCCGATCCGAATTTGTGTTGCCGGTTGAGAGAGTGAGAAAGAAAACTGGAAAAGGAAAAAAAAAAAAAACGGATGAGGGGTGTACACGTGGCGCCTTTGCTTTAGCCCAATTACCGGTTGTACAGTTTTGCCCGCGCTAA

Coding sequence (CDS)

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAATCAGAAAAGCAAAGCGCCGGTTTATCGGACCCCGATCCGAATTTGTGTTGCCGGTTGAGAGAGTGAGAAAGAAAACTGGAAAAGGAAAAAAAAAAAAAACGGATGAGGGGTGTACACGTGGCGCCTTTGCTTTAGCCCAATTACCGGTTGTACAGTTTTGCCCGCGCTAA

Protein sequence

MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAIRKAKRRFIGPRSEFVLPVERVRKKTGKGKKKKTDEGCTRGAFALAQLPVVQFCPR

Homology

[Close]

BLAST of IVF0016221.1 vs. ExPASy TrEMBL
Match: A0A0A0LU87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050010 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 71/118 (60.17%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAI-----------------------R 60
           MNEQPKENTWRSGILLCLARISSQDRRHETDLQIA                        +
Sbjct: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60

Query: 61  KAK-RRFIGPRSEFV---LPVERVRKKTGKGKKKKTDEGCTRGAFALAQLPVVQFCPR 92
           K+K RRFIGPRSEFV   LPVER              E CTRGA ALAQLPVVQF PR
Sbjct: 61  KSKARRFIGPRSEFVWFLLPVER--------------ESCTRGAIALAQLPVVQFSPR 104

[Close]

BLAST of IVF0016221.1 vs. NCBI nr
Match: KGN64362.1 (hypothetical protein Csa_013888 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 1.31e-29
Identity = 71/118 (60.17%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAI-----------------------R 60
           MNEQPKENTWRSGILLCLARISSQDRRHETDLQIA                        +
Sbjct: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60

Query: 61  KAK-RRFIGPRSEFV---LPVERVRKKTGKGKKKKTDEGCTRGAFALAQLPVVQFCPR 91
           K+K RRFIGPRSEFV   LPVER              E CTRGA ALAQLPVVQF PR
Sbjct: 61  KSKARRFIGPRSEFVWFLLPVER--------------ESCTRGAIALAQLPVVQFSPR 104

The following BLAST results are available for this feature:

BLAST of IVF0016221.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016221.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU87	1.9e-22	60.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050010 PE=4 SV=1	[more]

BLAST of IVF0016221.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64362.1	1.31e-29	60.17	hypothetical protein Csa_013888 [Cucumis sativus]	[more]

BLAST of IVF0016221.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0016221	IVF0016221	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016221.1-exon	IVF0016221.1-exon-chr12:23177688..23177792	exon
IVF0016221.1-exon	IVF0016221.1-exon-chr12:23177876..23177984	exon
IVF0016221.1-exon	IVF0016221.1-exon-chr12:23178085..23178146	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016221.1-cds	IVF0016221.1-cds-chr12:23177688..23177792	CDS
IVF0016221.1-cds	IVF0016221.1-cds-chr12:23177876..23177984	CDS
IVF0016221.1-cds	IVF0016221.1-cds-chr12:23178085..23178146	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0016221.1	IVF0016221.1-protein	polypeptide