HG10014730 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014730
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S26
Location	Chr02: 18800714 .. 18803315 (-)
RNA-Seq Expression	HG10014730
Synteny	HG10014730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGATCATTAGCCCTTTTCCCCTTCCTCTGAATCTTCTTGTTGTAAATCGTTCTCCATTTATCTTTTCTGCTTTTGGTTCTGTCAGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAATGCTGCCCTAAGGTTATTGTTTTACTCATCTTTCTGCGCAATTCTTGCATGCATATCTTGATTGTTTAATGGCAGAGGTCAAATCTATATGCATTGCAAATGTTTTCTCTGCGGAATGGGGGGGGGGGGGGGGGTCATTTTGTGTATTAATTAGCTTTTTTTTTTTTTTTTTTAATTTCTTTATTGCAAGTATAACTGGTGTGTTTATGGTTGAGTGTTCTAGAAATGAGGGATAAGTGTCTGCCAAGTTTGGGGATATGATTTTTTATGTTGAATGTTAGTATCTATATGAGTTTGTATTTATATTGTTGTTAAGTGATTGTTTGGTTGGATTTTCGATAAGTTAAAAAAGTAGACGTTTTATAGAAGTACTTTTTTAAAAGGAAATGGAATTCTCTTAGGCGTTCTCAAACTCAACGCTTTATTAGGTTTGAGGTCTGTCTGAAGACAAGATTCTAACTTTTAGCCATGAGACTTATGCCTTCTTTTGACCGTAAGAGGTTTATTCTCTTATATGAGAAAGTTTACGCTTCCCTGAAAATGCACTAAGGCTTAAAAGTCTTTACACCTCTCAAAAAAATTAGGAGAATTACATGAAGTTACCCAACTTCTAAAATATAAAGGTTCTTTTGTGTTTGTAATGTTAATAAATGACTTGTGGCAATTCAACCAGTCACTAGTTTGACTATCTAAGCTTCAAAGTCATTGAAGACAAAACTGTACAAATAAGTCATCAATCCTCAGAGTGGCGATGTTAAGAAATTCTAAATTATAAAAAAATACCCGTGAACTTTCCATTGGTTTAAAAAAATGCCCCTATTTAAGTTGCAATATTAATAACTTTGACTTTTTATAAAGTTTTCCAAACTACCCTTGAAGTAGAAATACACTAAAGCTTTGGATGGAATTTGGGACCTAGAACGGATATGGCAATTACCTAGAATAGTGTGTGGTGGTATATGGTTCTCTCAATTTTATTTCTTAGTCTTCACCATACCATTTCAAGTCCTAATTTTTGTGCAATATTCTAATGGACTTCTACTCTAAGGGTAGTTTTGAAAAGTTAATGAAAGTTTAAGGGTAGTATTTTAACTTTTGAAAAAAATATGGGTATTTTTTAAATAATGGGCAAAGTTTAGGGGTGTTTTTTGTAATTTAGCCTAGAAATTTTATTTAGGTGACAATTGATGGGTAATTTTTCCAATACTTGAAGAAAAGTCTCGAGACCACCTTTTGTCTTTTTAAACATTGCTTAAGCACACTAGTTGTGGACGGTGTGAATTTTGAGCGTCCATTGACTATGGCAAAAGAGCAGTTGAATTTTATTTTAGCAAAGAGCTGAAGTTGATTAAATCTAACATCATTAGTTTTGATTGATGAGAATAGGACAAGGCTATTAAGAGGTTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCGTAAGTTTTTTTGTTCACTTGATATATTTTGGTTGCTCTATTTCATATAACAAGCGTATTTTTGTTAAGTGTCTGATATAGATCGCTGTGTATGTTTTCTGAGCAGAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGTTAGTCTTTGCATAAATTATTTATAACTTTAATTCATAACTAAGTAACCATATTAACAGTGAATTTGATGAAGCGTGTCTATTTTATATGCTCTTATTACTCATAAACGATGGTTGGTGTTTGCATAAGATATTTATAGATTTGATTCATCATGAAGTAACAATGATCACAGTGCATTTGATTAAGTCTGTTTATCTTTACTCTTAACATTTAATGAGCTCAAATTTTTATGACGAGCAGTAGAAAGAGTATTTGCATCATAATGTTATCTTAACTCTTATGCTTCTTTTATAATCATTGATGAATATGAGAAACTCCTCCATTAGGTACTTTGTTTGCTGCATTCTTGTTACCAAATGAATACATTTGTATTATTACTATGTATTAAGAAAATAATCCATCCGACATCATTATATTTTTAAAACTTGGTTCAGATGGTTCCCCTACACTTGCGGTTTGATATGTTAAACTCATTTTATTTTAATTATGATACCAACTATTTGGTAAGACTATTGACGTTCATCTTATACTTGTTAGTGCATGTAACTCAGTTCTTTTCGTTGGTCCATCTAGTGTAGCTTAAGCATGTATACTTCCCTACAATGAGATAGCTTAAGCATGTAGTTTATGTGTTTGTTTTCAGGAGGATCAGCCAAAGCCTGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

mRNA sequence

ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCTATTAAGAGGTTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGAGGATCAGCCAAAGCCTGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCTATTAAGAGGTTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATATACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGAGGATCAGCCAAAGCCTGGTCAGCCAGGTCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRPVGAGNPARV

Homology

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BLAST of HG10014730 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.7e-66
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of HG10014730 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
            GAG PARV
Sbjct: 121 AGAGIPARV 129

[Close]

BLAST of HG10014730 vs. NCBI nr
Match: XP_023529394.1 (40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
            GAG PARV
Sbjct: 121 AGAGVPARV 129

[Close]

BLAST of HG10014730 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 7.0e-65
Identity = 127/132 (96.21%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPK---PGQPGQA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR+DQPK   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120

Query: 121 PRPVGAGNPARV 130
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 132

[Close]

BLAST of HG10014730 vs. NCBI nr
Match: KAG6599946.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030627.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 127/135 (94.07%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPK------PGQP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR+DQPK      PGQP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQP 120

Query: 121 GQAPRPVGAGNPARV 130
           GQAPRPVGAGNPARV
Sbjct: 121 GQAPRPVGAGNPARV 135

[Close]

BLAST of HG10014730 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of HG10014730 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of HG10014730 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.9e-55
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G PA
Sbjct: 121 AG-GAPA 126

[Close]

BLAST of HG10014730 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 99/128 (77.34%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQP-GQAPR 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RRRED+P+  +P G AP 
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPA 120

Query: 121 PVGAGNPA 128
           P GA  PA
Sbjct: 121 PGGAAAPA 127

[Close]

BLAST of HG10014730 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R    +PG PG  PRP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117

[Close]

BLAST of HG10014730 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of HG10014730 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of HG10014730 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
           VGAGNPARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of HG10014730 vs. ExPASy TrEMBL
Match: A0A6J1JIN0 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111484926 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
            GAG PARV
Sbjct: 121 AGAGIPARV 129

[Close]

BLAST of HG10014730 vs. ExPASy TrEMBL
Match: A0A6J1FWD9 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447947 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 VGAGNPARV 130
            GAG PARV
Sbjct: 121 AGAGIPARV 129

[Close]

BLAST of HG10014730 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of HG10014730 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of HG10014730 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 214.5 bits (545), Expect = 4.9e-56
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 VGAGNPA 128
            G G PA
Sbjct: 121 AG-GAPA 126

The following BLAST results are available for this feature:

BLAST of HG10014730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146441.1	3.7e-66	99.22	40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib...	[more]
XP_022943123.1	3.2e-65	97.67	40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso...	[more]
XP_023529394.1	3.2e-65	97.67	40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941874.1	7.0e-65	96.21	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso...	[more]
KAG6599946.1	1.6e-64	94.07	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]

BLAST of HG10014730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49206	2.4e-55	84.25	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	2.4e-55	84.25	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
Q9LYK9	6.9e-55	85.04	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49216	1.5e-49	77.34	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	1.3e-37	67.50	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of HG10014730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIJ0	1.8e-66	99.22	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KM45	1.8e-66	99.22	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1	[more]
A0A1S3C5M1	1.8e-66	99.22	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1	[more]
A0A6J1JIN0	1.5e-65	97.67	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111484926 PE=3 SV=1	[more]
A0A6J1FWD9	1.5e-65	97.67	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447947 PE=3 SV=...	[more]

BLAST of HG10014730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40510.1	1.7e-56	84.25	Ribosomal protein S26e family protein	[more]
AT2G40590.1	1.7e-56	84.25	Ribosomal protein S26e family protein	[more]
AT3G56340.1	4.9e-56	85.04	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..106 e-value: 7.8E-55 score: 183.9
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..128
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..115 e-value: 5.1E-59 score: 199.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014730.1	HG10014730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity