HG10002785 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002785
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr11: 12465268 .. 12465651 (-)
RNA-Seq ExpressionHG10002785
SyntenyHG10002785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCAAATTCCTTAGCGACTTCTATTCTTAAGATCATTTACTTTCCAAATAGCTCAATTCTTGATGCTGATATGGGATCCAATCGTTCTGTTCCTTGGAGAAGCCTTATTTGGGGCAGAGAGGTGGTTAAACTGGGGCTAAGGTTTCGGGTGGGTAATAGAAAAGCCATCAGATTATTCTTAGATCCTTGGATCCCAAGAGCACTTACCTTCAAACCTACCTTGATTAATCATGAGTTTAAAGATGCTCTTGTGGCAGATTTTATTGATTCTGATGGCCAATGGATGTTGAATAAGCTTGAAGTTGTCCTTCTTAAAGAGGATGTTGAAGCCATTTGCCGGATTCCCATTAATAAAAGGTTAAATGATAAATGGGTATGA

mRNA sequence

ATGAACCCAAATTCCTTAGCGACTTCTATTCTTAAGATCATTTACTTTCCAAATAGCTCAATTCTTGATGCTGATATGGGATCCAATCGTTCTGTTCCTTGGAGAAGCCTTATTTGGGGCAGAGAGGTGGTTAAACTGGGGCTAAGGTTTCGGGTGGGTAATAGAAAAGCCATCAGATTATTCTTAGATCCTTGGATCCCAAGAGCACTTACCTTCAAACCTACCTTGATTAATCATGAGTTTAAAGATGCTCTTGTGGCAGATTTTATTGATTCTGATGGCCAATGGATGTTGAATAAGCTTGAAGTTGTCCTTCTTAAAGAGGATGTTGAAGCCATTTGCCGGATTCCCATTAATAAAAGGTTAAATGATAAATGGGTATGA

Coding sequence (CDS)

ATGAACCCAAATTCCTTAGCGACTTCTATTCTTAAGATCATTTACTTTCCAAATAGCTCAATTCTTGATGCTGATATGGGATCCAATCGTTCTGTTCCTTGGAGAAGCCTTATTTGGGGCAGAGAGGTGGTTAAACTGGGGCTAAGGTTTCGGGTGGGTAATAGAAAAGCCATCAGATTATTCTTAGATCCTTGGATCCCAAGAGCACTTACCTTCAAACCTACCTTGATTAATCATGAGTTTAAAGATGCTCTTGTGGCAGATTTTATTGATTCTGATGGCCAATGGATGTTGAATAAGCTTGAAGTTGTCCTTCTTAAAGAGGATGTTGAAGCCATTTGCCGGATTCCCATTAATAAAAGGTTAAATGATAAATGGGTATGA

Protein sequence

MNPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRLNDKWV
Homology
BLAST of HG10002785 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21
Identity = 49/114 (42.98%), Postives = 77/114 (67.54%), Query Frame = 0

Query: 3    PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
            PNSL   ++K  Y+ NS+  +A +GSN S  WRS++WG +V+K G+R+R+G+ K + ++ 
Sbjct: 971  PNSLMARVMKARYYKNSTFWNAKVGSNPSFIWRSILWGSQVIKKGVRWRIGDGKKVLVYK 1030

Query: 63   DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRI 117
            D WIPR  TF+P        + +VAD IDS+ +W +++LE   +KED+EAI +I
Sbjct: 1031 DKWIPRPATFQPISPKTLPHETVVADLIDSENKWRVDRLEQHFMKEDIEAILKI 1084

BLAST of HG10002785 vs. NCBI nr
Match: ABB46931.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-21
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 0

Query: 3    PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
            P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ 
Sbjct: 1412 PDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWR 1471

Query: 63   DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRL 122
            DPWIPR+ + +P       +   V+D ID  G W  +K+    L  D EAI  I ++ RL
Sbjct: 1472 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1531

Query: 123  NDKWV 128
             D ++
Sbjct: 1532 EDDFI 1536

BLAST of HG10002785 vs. NCBI nr
Match: AAM01179.2 (Putative retroelement [Oryza sativa Japonica Group])

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-21
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 0

Query: 3    PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
            P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ 
Sbjct: 1447 PDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWR 1506

Query: 63   DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRL 122
            DPWIPR+ + +P       +   V+D ID  G W  +K+    L  D EAI  I ++ RL
Sbjct: 1507 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1566

Query: 123  NDKWV 128
             D ++
Sbjct: 1567 EDDFI 1571

BLAST of HG10002785 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-20
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 0

Query: 2    NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLF 61
            +PN L + +LK  YF ++S+L A   S  S  W+  +WGR+++  GLR RVGN   I+ F
Sbjct: 969  HPNLLVSKVLKHKYFKDTSLLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNGSTIKAF 1028

Query: 62   LDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINK- 121
             DPW+PR  TFKP   N+   D  VA FI +DG W +  +      ED + I  +PI+  
Sbjct: 1029 SDPWLPRPTTFKPLRFNNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISSY 1088

Query: 122  RLNDKWV 128
             L D W+
Sbjct: 1089 NLQDSWL 1095

BLAST of HG10002785 vs. NCBI nr
Match: EEC72938.1 (hypothetical protein OsI_06800 [Oryza sativa Indica Group])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-19
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 3   PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
           P+SL   ILK  Y+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ 
Sbjct: 284 PDSLCARILKAKYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWR 343

Query: 63  DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRL 122
           DPWIPR+ + +P       +   V+D ID    W  +K+    L  D EAI  I ++ RL
Sbjct: 344 DPWIPRSFSRRPISAKRNCRLRWVSDLIDQSESWDTDKISQHFLPMDAEAILNIRLSSRL 403

Query: 123 NDKWV 128
            D ++
Sbjct: 404 EDDFI 408

BLAST of HG10002785 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 24/64 (37.50%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 3   PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
           P++L + +L+  YFP+SS+++  +G+  S  WRS+I GRE++  GL   +G+    +++L
Sbjct: 81  PHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWL 140

Query: 63  DPWI 67
           D WI
Sbjct: 141 DRWI 144

BLAST of HG10002785 vs. ExPASy TrEMBL
Match: Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 0

Query: 3    PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
            P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ 
Sbjct: 1447 PDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWR 1506

Query: 63   DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRL 122
            DPWIPR+ + +P       +   V+D ID  G W  +K+    L  D EAI  I ++ RL
Sbjct: 1507 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1566

Query: 123  NDKWV 128
             D ++
Sbjct: 1567 EDDFI 1571

BLAST of HG10002785 vs. ExPASy TrEMBL
Match: Q33AJ4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g09610 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 0

Query: 3    PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
            P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ 
Sbjct: 1412 PDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWR 1471

Query: 63   DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRL 122
            DPWIPR+ + +P       +   V+D ID  G W  +K+    L  D EAI  I ++ RL
Sbjct: 1472 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1531

Query: 123  NDKWV 128
             D ++
Sbjct: 1532 EDDFI 1536

BLAST of HG10002785 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 0

Query: 2    NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLF 61
            +PN L + +LK  YF ++S+L A   S  S  W+  +WGR+++  GLR RVGN   I+ F
Sbjct: 969  HPNLLVSKVLKHKYFKDTSLLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNGSTIKAF 1028

Query: 62   LDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINK- 121
             DPW+PR  TFKP   N+   D  VA FI +DG W +  +      ED + I  +PI+  
Sbjct: 1029 SDPWLPRPTTFKPLRFNNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISSY 1088

Query: 122  RLNDKWV 128
             L D W+
Sbjct: 1089 NLQDSWL 1095

BLAST of HG10002785 vs. ExPASy TrEMBL
Match: B8AFP4 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_06800 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 3   PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
           P+SL   ILK  Y+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ 
Sbjct: 284 PDSLCARILKAKYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWR 343

Query: 63  DPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPINKRL 122
           DPWIPR+ + +P       +   V+D ID    W  +K+    L  D EAI  I ++ RL
Sbjct: 344 DPWIPRSFSRRPISAKRNCRLRWVSDLIDQSESWDTDKISQHFLPMDAEAILNIRLSSRL 403

Query: 123 NDKWV 128
            D ++
Sbjct: 404 EDDFI 408

BLAST of HG10002785 vs. ExPASy TrEMBL
Match: A0A5E4F9F7 (PREDICTED: reverse mRNAase OS=Prunus dulcis OX=3755 GN=ALMOND_2B012785 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 0

Query: 2   NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLF 61
           +P+SL T ++K  YF  SS L A +GS+ S+ WR+L+WGR+V+  G   RVGN  +IRLF
Sbjct: 44  DPSSLLTQMMKARYFRTSSFLQAKLGSSPSLIWRALLWGRDVLHDGFVGRVGNGNSIRLF 103

Query: 62  LDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDVEAICRIPI 119
            + WIP+  TFK  + N    DA VAD   S G W L  L+    KED +AI  I +
Sbjct: 104 HNKWIPKPFTFKTLMNNGLNWDAKVADLFTSSGSWNLPILDTSFCKEDCDAIASIDL 160

BLAST of HG10002785 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08
Identity = 24/64 (37.50%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 3   PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
           P++L + +L+  YFP+SS+++  +G+  S  WRS+I GRE++  GL   +G+    +++L
Sbjct: 81  PHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWL 140

Query: 63  DPWI 67
           D WI
Sbjct: 141 DRWI 144

BLAST of HG10002785 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 34/134 (25.37%), Postives = 66/134 (49.25%), Query Frame = 0

Query: 3   PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFL 62
           P SL   + K  YF  S  L+A +GS  S  W+S+   +E+++ G R  VGN + I ++ 
Sbjct: 80  PESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWR 139

Query: 63  DPWI---PRALTFKPTLINHEFKDAL-----VADFIDSDG-QWMLNKLEVVLLKEDVEAI 122
             W+   P +   +   +  +   ++     V+D ID  G +W  + +E++  + + + I
Sbjct: 140 HKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLI 199

Query: 123 CRI-PINKRLNDKW 127
             + P  +R+ D +
Sbjct: 200 GELRPGGRRILDSY 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_006491472.13.6e-2142.98uncharacterized protein LOC102626455 [Citrus sinensis][more]
ABB46931.26.1e-2140.00retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
AAM01179.26.1e-2140.00Putative retroelement [Oryza sativa Japonica Group][more]
XP_022158377.12.3e-2040.16uncharacterized protein LOC111024874 [Momordica charantia][more]
EEC72938.12.6e-1938.40hypothetical protein OsI_06800 [Oryza sativa Indica Group][more]
Match NameE-valueIdentityDescription
P932953.1e-0737.50Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
Q8S5K13.0e-2140.00Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.... [more]
Q33AJ43.0e-2140.00Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
A0A6J1DX301.1e-2040.16uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
B8AFP41.2e-1938.40Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
A0A5E4F9F76.2e-1945.30PREDICTED: reverse mRNAase OS=Prunus dulcis OX=3755 GN=ALMOND_2B012785 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00310.12.2e-0837.50RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.12.0e-0625.37Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002785.1HG10002785.1mRNA