HG10002425 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002425
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	25.3 kDa vesicle transport protein
Location	Chr11: 6646953 .. 6647204 (+)
RNA-Seq Expression	HG10002425
Synteny	HG10002425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGCTGACAATGATTGCCCGTGTTACTGACGGTCTTCCTCTTGCTGAGGGACTAGATGATGGTCGTGATTTGAAAGATGCTGAATATTACAAGCAGCAAGCCAAAGCGTTGTTTAAGAACTTATCAAGAGGACAGAATGAGGCTTCGAGGATGTCTATTGAAACCGGCTCTTATGTCTTTCAGTATCCTTGCAACATGCAAGATTATTTTCTGTGCAATCTTAGATTAGAGTATCAAATGCCCTAG

mRNA sequence

ATGGTGAAGCTGACAATGATTGCCCGTGTTACTGACGGTCTTCCTCTTGCTGAGGGACTAGATGATGGTCGTGATTTGAAAGATGCTGAATATTACAAGCAGCAAGCCAAAGCGTTGTTTAAGAACTTATCAAGAGGACAGAATGAGGCTTCGAGGATGTCTATTGAAACCGGCTCTTATGTCTTTCAGTATCCTTGCAACATGCAAGATTATTTTCTGTGCAATCTTAGATTAGAGTATCAAATGCCCTAG

Coding sequence (CDS)

ATGGTGAAGCTGACAATGATTGCCCGTGTTACTGACGGTCTTCCTCTTGCTGAGGGACTAGATGATGGTCGTGATTTGAAAGATGCTGAATATTACAAGCAGCAAGCCAAAGCGTTGTTTAAGAACTTATCAAGAGGACAGAATGAGGCTTCGAGGATGTCTATTGAAACCGGCTCTTATGTCTTTCAGTATCCTTGCAACATGCAAGATTATTTTCTGTGCAATCTTAGATTAGAGTATCAAATGCCCTAG

Protein sequence

MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSYVFQYPCNMQDYFLCNLRLEYQMP

Homology

[Close]

BLAST of HG10002425 vs. NCBI nr
Match: KAE8650885.1 (hypothetical protein Csa_000865 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.9e-35
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL+DAEYYKQQAK+LFKNLS GQNE SRMS+ETG+Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLRDAEYYKQQAKSLFKNLSTGQNEPSRMSVETGAY 60

Query: 61 VFQYPCNMQDYFLCNLRLEYQMP 84
          VFQYPCNMQD F CNLRLEYQMP
Sbjct: 61 VFQYPCNMQDCFPCNLRLEYQMP 83

[Close]

BLAST of HG10002425 vs. NCBI nr
Match: MBA0779298.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL DAE YKQQ KALFKNLS+G NEASRMS+ETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLTDAEMYKQQVKALFKNLSKGHNEASRMSVETGPY 60

Query: 61 VFQYPCNMQDYFL 74
          VFQYPC +  Y +
Sbjct: 61 VFQYPCPVHSYII 73

[Close]

BLAST of HG10002425 vs. NCBI nr
Match: MBA0840405.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL DAE YKQQ KALFKNLS+G NEASRMS+ETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLTDAEMYKQQVKALFKNLSKGHNEASRMSVETGPY 60

Query: 61 VFQYPCNMQDYFL 74
          VFQYPC +  Y +
Sbjct: 61 VFQYPCPVHSYII 73

[Close]

BLAST of HG10002425 vs. NCBI nr
Match: MBA0812213.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL DAE YKQQ KALFKNLS+G NEASRMS+ETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLTDAEMYKQQVKALFKNLSKGHNEASRMSVETGPY 60

Query: 61 VFQYPCNMQDYFL 74
          VFQYPC +  Y +
Sbjct: 61 VFQYPCPVHSYII 73

[Close]

BLAST of HG10002425 vs. NCBI nr
Match: RYQ85624.1 (hypothetical protein Ahy_B10g105193 isoform E [Arachis hypogaea])

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-25
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDLKDAE+YKQQ KALFKNLSRG NEASRMSIETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEFYKQQVKALFKNLSRGHNEASRMSIETGPY 60

Query: 61 VFQYP 66
          VFQYP
Sbjct: 61 VFQYP 65

[Close]

BLAST of HG10002425 vs. ExPASy Swiss-Prot
Match: Q94AU2 (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-24
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVK+T+IARVTDGLPLAEGLDDGRDL D++ YKQQ KALFKNLSRGQN+ASRMS+ETG Y
Sbjct: 1  MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPY 60

Query: 61 VFQY 65
          VF Y
Sbjct: 61 VFHY 64

[Close]

BLAST of HG10002425 vs. ExPASy Swiss-Prot
Match: Q5ZJW4 (Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGL-DDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGS 60
          MV LTMIARV DGLPLA  + +D +  +D + Y+ QAK LF+ L+  +   +R ++E G+
Sbjct: 1  MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGA 60

Query: 61 YVFQY 65
            F Y
Sbjct: 61 MAFHY 63

[Close]

BLAST of HG10002425 vs. ExPASy Swiss-Prot
Match: O75396 (Vesicle-trafficking protein SEC22b OS=Homo sapiens OX=9606 GN=SEC22B PE=1 SV=4)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGL-DDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGS 60
          MV LTMIARV DGLPLA  + +D +  +D + Y+ QAK LF+ L+  +   +R ++E G+
Sbjct: 1  MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGA 60

Query: 61 YVFQY 65
            F Y
Sbjct: 61 MTFHY 63

[Close]

BLAST of HG10002425 vs. ExPASy Swiss-Prot
Match: O08547 (Vesicle-trafficking protein SEC22b OS=Mus musculus OX=10090 GN=Sec22b PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGL-DDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGS 60
          MV LTMIARV DGLPLA  + +D +  +D + Y+ QAK LF+ L+  +   +R ++E G+
Sbjct: 1  MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGA 60

Query: 61 YVFQY 65
            F Y
Sbjct: 61 MTFHY 63

[Close]

BLAST of HG10002425 vs. ExPASy Swiss-Prot
Match: Q5RAI9 (Vesicle-trafficking protein SEC22b OS=Pongo abelii OX=9601 GN=SEC22B PE=2 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGL-DDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGS 60
          MV LTMIARV DGLPLA  + +D +  +D + Y+ QAK LF+ L+  +   +R ++E G+
Sbjct: 1  MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGA 60

Query: 61 YVFQY 65
            F Y
Sbjct: 61 MTFHY 63

[Close]

BLAST of HG10002425 vs. ExPASy TrEMBL
Match: A0A0D3GDU4 (Uncharacterized protein OS=Oryza barthii OX=65489 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.6e-26
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRD KDA++YKQQAK LFKNLS+GQ+EASRMSIETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPY 60

Query: 61 VFQYPCNMQDYFLCNLRLEYQ 82
           FQYP  +  YF+  ++L +Q
Sbjct: 61 YFQYPYVLCGYFILGIKLAFQ 81

[Close]

BLAST of HG10002425 vs. ExPASy TrEMBL
Match: A0A7J9K1U8 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_002989 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL DAE YKQQ KALFKNLS+G NEASRMS+ETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLTDAEMYKQQVKALFKNLSKGHNEASRMSVETGPY 60

Query: 61 VFQYPCNMQDYFL 74
          VFQYPC +  Y +
Sbjct: 61 VFQYPCPVHSYII 73

[Close]

BLAST of HG10002425 vs. ExPASy TrEMBL
Match: A0A7J9F2B2 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_003565 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL DAE YKQQ KALFKNLS+G NEASRMS+ETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLTDAEMYKQQVKALFKNLSKGHNEASRMSVETGPY 60

Query: 61 VFQYPCNMQDYFL 74
          VFQYPC +  Y +
Sbjct: 61 VFQYPCPVHSYII 73

[Close]

BLAST of HG10002425 vs. ExPASy TrEMBL
Match: A0A7J9HR89 (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_026199 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDL DAE YKQQ KALFKNLS+G NEASRMS+ETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLTDAEMYKQQVKALFKNLSKGHNEASRMSVETGPY 60

Query: 61 VFQYPCNMQDYFL 74
          VFQYPC +  Y +
Sbjct: 61 VFQYPCPVHSYII 73

[Close]

BLAST of HG10002425 vs. ExPASy TrEMBL
Match: A0A444X7K5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g105193 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVKLTMIARVTDGLPLAEGLDDGRDLKDAE+YKQQ KALFKNLSRG NEASRMSIETG Y
Sbjct: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEFYKQQVKALFKNLSRGHNEASRMSIETGPY 60

Query: 61 VFQYP 66
          VFQYP
Sbjct: 61 VFQYP 65

[Close]

BLAST of HG10002425 vs. TAIR 10
Match: AT1G11890.1 (Synaptobrevin family protein )

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-25
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQAKALFKNLSRGQNEASRMSIETGSY 60
          MVK+T+IARVTDGLPLAEGLDDGRDL D++ YKQQ KALFKNLSRGQN+ASRMS+ETG Y
Sbjct: 1  MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPY 60

Query: 61 VFQY 65
          VF Y
Sbjct: 61 VFHY 64

The following BLAST results are available for this feature:

BLAST of HG10002425 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650885.1	4.9e-35	90.36	hypothetical protein Csa_000865 [Cucumis sativus]	[more]
MBA0779298.1	2.1e-25	82.19	hypothetical protein [Gossypium trilobum]	[more]
MBA0840405.1	2.1e-25	82.19	hypothetical protein [Gossypium armourianum]	[more]
MBA0812213.1	2.1e-25	82.19	hypothetical protein [Gossypium harknessii]	[more]
RYQ85624.1	4.6e-25	93.85	hypothetical protein Ahy_B10g105193 isoform E [Arachis hypogaea]	[more]

BLAST of HG10002425 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU2	3.1e-24	82.81	25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2...	[more]
Q5ZJW4	1.3e-06	44.62	Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1	[more]
O75396	1.3e-06	44.62	Vesicle-trafficking protein SEC22b OS=Homo sapiens OX=9606 GN=SEC22B PE=1 SV=4	[more]
O08547	1.3e-06	44.62	Vesicle-trafficking protein SEC22b OS=Mus musculus OX=10090 GN=Sec22b PE=1 SV=3	[more]
Q5RAI9	1.3e-06	44.62	Vesicle-trafficking protein SEC22b OS=Pongo abelii OX=9601 GN=SEC22B PE=2 SV=3	[more]

BLAST of HG10002425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D3GDU4	7.6e-26	75.31	Uncharacterized protein OS=Oryza barthii OX=65489 PE=3 SV=1	[more]
A0A7J9K1U8	1.0e-25	82.19	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_002989 PE=3 S...	[more]
A0A7J9F2B2	1.0e-25	82.19	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_003565 PE=3 SV=1	[more]
A0A7J9HR89	1.0e-25	82.19	Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_026199 PE=3 SV...	[more]
A0A444X7K5	2.2e-25	93.85	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g105193 PE=3 SV=1	[more]

BLAST of HG10002425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11890.1	2.2e-25	82.81	Synaptobrevin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.50	Longin domain	coord: 1..82 e-value: 2.0E-17 score: 65.2
None	No IPR available	PANTHER	PTHR45837:SF10	BNAA09G47480D PROTEIN	coord: 1..64
IPR044565	Vesicle-trafficking protein Sec22	PANTHER	PTHR45837	VESICLE-TRAFFICKING PROTEIN SEC22B	coord: 1..64
IPR010908	Longin domain	PROSITE	PS50859	LONGIN	coord: 6..64 score: 11.436792
IPR010908	Longin domain	CDD	cd14824	Longin	coord: 5..64 e-value: 4.90749E-11 score: 52.2581
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002425.1	HG10002425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0061025	membrane fusion
biological_process	GO:0009854	oxidative photosynthetic carbon pathway
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0003973	(S)-2-hydroxy-acid oxidase activity
molecular_function	GO:0005484	SNAP receptor activity