Cucsat.G8548 (gene) Cucumber (B10) v3

Overview
NameCucsat.G8548
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1557: 4009740 .. 4010431 (-)
RNA-Seq ExpressionCucsat.G8548
SyntenyCucsat.G8548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATGCCTTAGTGCTTTACAATTGTGCAATAAATTTCTTTGGATCTGAAGCCTTTCCCATAATTTCCTTTTCCTTTCCTTGATAACTACAAAACCCTCTCTCTCTCTCTCTCTTTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGTGTGATTTTCTTTTTCAACAGTTGATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATAATAATAATTTGATTATTGTGTTAACTTAGCAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTTATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTCCCTTGTATGTTAAGAAAAATAATAATGGGAAG

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSPAT
Homology
BLAST of Cucsat.G8548 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 2.53e-51
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 23  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEI 82
           MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLK GIGGKSRKMMIEI
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLK-GIGGKSRKMMIEI 60

Query: 83  MDYADPGPNTNTRSGYLNPPPPPSPAT 109
           MDYADPGPNTNTRSGYLNPPPPPSPAT
Sbjct: 61  MDYADPGPNTNTRSGYLNPPPPPSPAT 86

BLAST of Cucsat.G8548 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 2.32e-21
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 51  MIESLGHGSNVRISPSLKQGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPPPS 106
           MIESLGHGSNVR S SLK GIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPPP+
Sbjct: 1   MIESLGHGSNVR-SSSLK-GIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

BLAST of Cucsat.G8548 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 8.13e-14
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 26  PKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEIMDY 85
           PK+F  LLLL  F++  F  G     +E+  H +   IS S K+  GGK RK+M+E+MDY
Sbjct: 2   PKIFPILLLL--FIIFGFGVG----AMEAAAH-AGCDISSSQKKS-GGKPRKVMMEVMDY 61

Query: 86  ADPGPNTNTRSGYLNPP--PPPSPAT 109
           ADPGPNTNTRSGYL PP  PPP P++
Sbjct: 62  ADPGPNTNTRSGYLTPPSSPPPPPSS 79

BLAST of Cucsat.G8548 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 8.57e-14
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 23  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEI 82
           M HPK+F  LLLL  F++L F  G     +E+  H      S   K G  GK RK+M+E+
Sbjct: 1   MDHPKIFPILLLL--FIILGFGVG----AMEAAAHPGYDTSSSQKKSG--GKPRKVMMEV 60

Query: 83  MDYADPGPNTNTRSGYLNPP 102
           MDYADPGPNTNTRSGYL PP
Sbjct: 61  MDYADPGPNTNTRSGYLTPP 72

BLAST of Cucsat.G8548 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 1.59e-13
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 26  PKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEIMDY 85
           PK+F  LLLL  F++  F  G     +E+  H +   IS S K G  GK RK+M+E+MDY
Sbjct: 2   PKIFPILLLL--FIIFGFGVG----AMEAAAH-AGCDISSSQKSG--GKPRKVMMEVMDY 61

Query: 86  ADPGPNTNTRSGYLNPP--PPPSPAT 109
           ADPGPNTNTRSGYL PP  PPP P++
Sbjct: 62  ADPGPNTNTRSGYLTPPSSPPPPPSS 78

BLAST of Cucsat.G8548 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.22e-51
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 23  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEI 82
           MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLK GIGGKSRKMMIEI
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLK-GIGGKSRKMMIEI 60

Query: 83  MDYADPGPNTNTRSGYLNPPPPPSPAT 109
           MDYADPGPNTNTRSGYLNPPPPPSPAT
Sbjct: 61  MDYADPGPNTNTRSGYLNPPPPPSPAT 86

BLAST of Cucsat.G8548 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.12e-21
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 51  MIESLGHGSNVRISPSLKQGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPPPS 106
           MIESLGHGSNVR S SLK GIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPPP+
Sbjct: 1   MIESLGHGSNVR-SSSLK-GIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

BLAST of Cucsat.G8548 vs. ExPASy TrEMBL
Match: A0A498HG62 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.24e-10
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 29  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEIMDYADP 88
           F   L++SC L L F+HG   +++E+  HG +  +  S +    GKSRKM I +MDYADP
Sbjct: 6   FLRFLIVSCLLALCFSHGFGRKLVETAEHGEDSSVLVSRENH--GKSRKM-ITMMDYADP 65

Query: 89  GPNTNTRSGYLNPPPP 104
            PN N R+GY+  PPP
Sbjct: 66  EPNVNPRTGYIFTPPP 78

BLAST of Cucsat.G8548 vs. ExPASy TrEMBL
Match: A0A540L840 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.49e-10
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 29  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKQGIGGKSRKMMIEIMDYADP 88
           F   L++SC L L F+HGL  +++E+  HG +  +  S +    GKSRKM   +MDYADP
Sbjct: 6   FLRFLIVSCLLALCFSHGLGRKLVETAEHGDDSSVLVSRENH--GKSRKMNT-MMDYADP 65

Query: 89  GPNTNTRSGYLNPPPP 104
            PN N R+GY+  PPP
Sbjct: 66  EPNVNPRTGYIFTPPP 78

BLAST of Cucsat.G8548 vs. ExPASy TrEMBL
Match: A0A2P5CWE3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.69e-10
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 29  FSTLLLLSCFLLLSFTHGLKVEMIESL-GHGSNVRISPSLKQGIGGKSRKMMIEIMDYAD 88
           F T+LL+S F+LL F+HG     ++++ GH      S  +K+  G KSR+M IE+ DY++
Sbjct: 6   FPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSREM-IEVTDYSE 65

Query: 89  PGPNTNTRSGYLNPPPPPS 106
           P PNTN R+GY+  PPP S
Sbjct: 66  PEPNTNPRAGYIFTPPPSS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN52468.12.53e-5198.85hypothetical protein Csa_007886 [Cucumis sativus][more]
KAA0039487.12.32e-2187.72hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
XP_023527249.18.13e-1453.49uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6602500.18.57e-1453.75hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527257.11.59e-1353.49uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A0A0KSB71.22e-5198.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT51.12e-2187.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A498HG621.24e-1046.05Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1[more]
A0A540L8402.49e-1046.05Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1[more]
A0A2P5CWE32.69e-1045.57Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..123
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 51..121
NoneNo IPR availablePANTHERPTHR37908:SF3TRANSMEMBRANE PROTEINcoord: 51..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G8548.T3Cucsat.G8548.T3mRNA
Cucsat.G8548.T2Cucsat.G8548.T2mRNA