Cucsat.G8548.T3 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G8548.T3
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1557: 4009651 .. 4010522 (-)
RNA-Seq ExpressionCucsat.G8548.T3
SyntenyCucsat.G8548.T3
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATGCCTTAGTGCTTTACAATTGTGCAATAAATTTCTTTGGATCTGAAGCCTTTCCCATAATTTCCTTTTCCTTTCCTTGATAACTACAAAACCCTCTCTCTCTCTCTCTCTTTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGTGTGATTTTCTTTTTCAACAGTTGATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATAATAATAATTTGATTATTGTGTTAACTTAGCAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTTATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTCCCTTGTATGTTAAGAAAAATAATAATGGGAAG

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSPAT
Homology
BLAST of Cucsat.G8548.T3 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 2.74e-45
Identity = 86/123 (69.92%), Postives = 86/123 (69.92%), Query Frame = 0

Query: 1   MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQ 60
           MVHPKLFSTLLLLSCFLLLSFTHG                                    
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHG------------------------------------ 60

Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 120
            LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS
Sbjct: 61  -LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 86

Query: 121 PAT 123
           PAT
Sbjct: 121 PAT 86

BLAST of Cucsat.G8548.T3 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 8.18e-23
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 66  MIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPPPS 120
           MIESLGHGSNVR S SLKGIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPPP+
Sbjct: 1   MIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

BLAST of Cucsat.G8548.T3 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 5.21e-13
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PP 120
           G  V  +E+  H +   IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PP
Sbjct: 16  GFGVGAMEAAAH-AGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPP 75

Query: 121 PSPAT 123
           P P++
Sbjct: 76  PPPSS 79

BLAST of Cucsat.G8548.T3 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 8.18e-12
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PP 120
           G  V  +E+  H +   IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PP
Sbjct: 16  GFGVGAMEAAAH-AGCDISSSQKS-GGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPP 75

Query: 121 PSPAT 123
           P P++
Sbjct: 76  PPPSS 78

BLAST of Cucsat.G8548.T3 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 5.00e-11
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 57  FFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP 116
           F   G  V  +E+  H      S S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP
Sbjct: 14  FIILGFGVGAMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPP 72

BLAST of Cucsat.G8548.T3 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.33e-45
Identity = 86/123 (69.92%), Postives = 86/123 (69.92%), Query Frame = 0

Query: 1   MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQ 60
           MVHPKLFSTLLLLSCFLLLSFTHG                                    
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHG------------------------------------ 60

Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 120
            LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS
Sbjct: 61  -LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 86

Query: 121 PAT 123
           PAT
Sbjct: 121 PAT 86

BLAST of Cucsat.G8548.T3 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.96e-23
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 66  MIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPPPS 120
           MIESLGHGSNVR S SLKGIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPPP+
Sbjct: 1   MIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

BLAST of Cucsat.G8548.T3 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.35e-07
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 56  NFFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNP 115
           N F + L++ ++E L    N R+   L+  G K R M +E MDYADP PNTN + GY++P
Sbjct: 23  NGFGRNLRM-VVEPLDSHHNSRVL--LEESGRKWRMMKMETMDYADPEPNTNVKGGYVSP 82

Query: 116 PPPPS 120
           PPPP+
Sbjct: 83  PPPPN 84

BLAST of Cucsat.G8548.T3 vs. ExPASy TrEMBL
Match: A0A059AEU1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01355 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.97e-06
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 86  GGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSP 121
           GGK RKM +E+MDY+DP PNTN RSGYL  PPPP P
Sbjct: 55  GGKWRKM-VEVMDYSDPEPNTNPRSGYLLSPPPPPP 89

BLAST of Cucsat.G8548.T3 vs. ExPASy TrEMBL
Match: A0A498HG62 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.16e-06
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 58  FSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPP 117
           FS G   +++E+  HG +  +  S +   GKSRKM I +MDYADP PN N R+GY+  PP
Sbjct: 20  FSHGFGRKLVETAEHGEDSSVLVSREN-HGKSRKM-ITMMDYADPEPNVNPRTGYIFTPP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN52468.12.74e-4569.92hypothetical protein Csa_007886 [Cucumis sativus][more]
KAA0039487.18.18e-2389.29hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
XP_023527249.15.21e-1358.46uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023527257.18.18e-1258.46uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
KAG6602500.15.00e-1156.67hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KSB71.33e-4569.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT53.96e-2389.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCS04.35e-0746.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1[more]
A0A059AEU11.97e-0672.22Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01355 PE=4 SV... [more]
A0A498HG622.16e-0647.54Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..123
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 51..121
NoneNo IPR availablePANTHERPTHR37908:SF3TRANSMEMBRANE PROTEINcoord: 51..121

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G8548Cucsat.G8548gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G8548.T3.E1Cucsat.G8548.T3.E1exon
Cucsat.G8548.T3.E2Cucsat.G8548.T3.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G8548.T3.C2Cucsat.G8548.T3.C2CDS
Cucsat.G8548.T3.C1Cucsat.G8548.T3.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G8548.T3Cucsat.G8548.T3-proteinpolypeptide