Cucsat.G8369 (gene) Cucumber (B10) v3

Overview
NameCucsat.G8369
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionserine/arginine-rich splicing factor SR45a-like
Locationctg1557: 496237 .. 499581 (-)
RNA-Seq ExpressionCucsat.G8369
SyntenyCucsat.G8369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGCTCTAGAAACTTCTCTCCTCTCGAGGATATATATATAATGGTTTTGGCTTTCGCACGCAAAATCTCTTCTAATGCGTCTGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGGTAAGTTCCCTTTCTGTGTTTCGTTTTATTTTCGTTTGAGATGAAATGTTTGATCTGGATATGCATTTGATTCTGCTTTCGAACAGGCAGAATTAGGTTGGGGTTATTGTTTTATTGTTTTTTCTGTGATGAGCATGTGCATCCCTTTTTGTTGTTTGAGATGATATGTTCGGGGTTCTGATCGACATGCGCGTTTGATTCCGCTCTCTGTAATGTTTATGGAAAGAATTATATTCTGGTTATTGAGCGGGTTTTGTTTACTCTATGATTCGCTAGTTATGGGATGCAAATGGAGTAGTTTCTGTAATTTACTTGAAAATTTGATTGTTAAATTAGAACCACTTCGGAGATGTTGAAGTCAACCATATTTCTTTTTATTGGAGTCATGGATCTTAAATTGCTAATTTGGTATCATTTGGAGATCGTCCGAGTTTAATCAATTTGGTTTATAATTCTAATTTAGATCGATAGAAGTATAGAACACTCGTAAATATTCCTTGCAGTATGAATTATCTATGAAATTTTTATTAACGCATAAGGACTATTTTTTGAGGTTTTATTAAATCAAACTTAATTCGAATTTTTTTTTAAAACCATAGGACTAAACTAGCTTTCCCCAAACCATAGGAACTTAACTTGCAAGTTAATCTTTTCTTTACTTACGACAGCTCCTTGCGCTGTTCTGTTCAAGACGATATTCATACTTAATAGTACTCTTAACATTATGGTCTTCATCGACGCTTGTGCTTCTCGTTTTAAATCTCTGTTGAATTAAGTGATTTCTTGTTTGGTTCCAGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGTACTTCCTAACCAGAAACCACTTACTTGCTTGATTTTCCCACCTTCTCTAAATGATACGATGATGCATTTATTCTTATTGTATGGATTCTTAATTCGTTTTTCAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTATGTTCCTGATCTCTCATTTTTTGTTCATTCCTTCTTTCTTTTTTTCCTGGCATGCTATTCTTAGTGGCCGTGTATGTATTTTGTCTTTTGTGTTGGTGATTTAAGTTGTGGACTATCCCCCGTTCATGAATGGATGTCTTTAACTCCAGGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAAGTGAACTAATTATCTCTTCATAGACTTGGGATGTTTCCTATTGTTACTGTTGTCTTGTTCTTTAATCTGAAATGGTGTACCTGGATGATTTGATGTTAGAGATTTGAGTTTTTTTTGCCAAGTGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAATCAAAACAAACACATGAAGCCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGCATATGTGTTGAGTTATTAAAGTGTTTTAGCTTCTTTTTTCTTTTGTGAATCTCGACACTGTGACTTTGCATCCGTGCTATGGTATTTTTCTTGGATGGAAGCTTGAGTAGCTGGTCTCACTGTTTATCTTTAATTGTTTGACAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGTGAGATTAAAATCCAATGTTTGGCATATTGCTGTGAAATATCTTTGATATTTCTGTCTAATCCTCATCATTCTGACAGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCTGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAGCCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTACATTTGTGGTTTACCCTAATTGGATTATGCTGTTCTTTAACCTAATATAAACCTCATCTCTACTTTGGGAGTGGTATGAATTTTTTCGTGTATTACTATAAAATTTCTCCTATTCATCCAATAATTTGACCACCAAGTTATTAACATTTGTTCTGCCTCTTCCTGTTTTGGTTTTCCTT

Coding sequence (CDS)

ATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTTAGCTGTGTGTAG

Protein sequence

MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKVSCV
Homology
[Close]
BLAST of Cucsat.G8369 vs. NCBI nr
Match: KAA0031790.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (586), Expect = 4.87e-73
Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLSLGEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSLGEER 282

[Close]
BLAST of Cucsat.G8369 vs. NCBI nr
Match: TYJ97341.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 5.61e-72
Identity = 121/144 (84.03%), Postives = 126/144 (87.50%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLS GEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSPGEER 282

[Close]
BLAST of Cucsat.G8369 vs. NCBI nr
Match: KAG7036969.1 (Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.13e-10
Identity = 54/124 (43.55%), Postives = 65/124 (52.42%), Query Frame = 0 

Query: 38  DPVPLTNIVEHMVPHTI-VDRT-LIAGEDMILQTIGDV-MILQTTIGIISH--------I 97
           DP+   +  + M  HT  +D T LIA EDMIL TIG +  IL  T+ ++          I
Sbjct: 157 DPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRI 216

Query: 98  LDLAHHIGG---GAVTGHTHLVITIPLILTTEGTGTGQFLGAFLRSQG-TADITPEVTLL 146
           LD   H+ G   G  TG THL    PLI TTEGTG GQFLG   + QG   D+ P V LL
Sbjct: 217 LDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILL 276

[Close]
BLAST of Cucsat.G8369 vs. ExPASy TrEMBL
Match: A0A5A7SM07 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00310 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 2.36e-73
Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLSLGEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSLGEER 282

[Close]
BLAST of Cucsat.G8369 vs. ExPASy TrEMBL
Match: A0A5D3BFE7 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001490 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 2.71e-72
Identity = 121/144 (84.03%), Postives = 126/144 (87.50%), Query Frame = 0 

Query: 5   GRVATHLGVLPATLHIEEALAALRIVHLTGAEVDPVPLTNIVEHMVPHTIVDRTLIAGED 64
           GR ATHL VLPATLHI EALAAL I+HLT A VDPVP T+IV+HMVP TIVD TLIAGED
Sbjct: 139 GREATHLAVLPATLHIGEALAALLIIHLTVAGVDPVPSTDIVDHMVPLTIVDHTLIAGED 198

Query: 65  MILQTIGDVMILQTTIGIISHILDLAHHIGGGAVTGHTHLVITIPLILTTEGTGTGQFLG 124
           MIL TIGD MILQTTIGII HILD AH IGGGA TGHTHL+ITIPLILTTEGTGTGQFLG
Sbjct: 199 MILHTIGDDMILQTTIGIIGHILDPAHRIGGGAATGHTHLMITIPLILTTEGTGTGQFLG 258

Query: 125 AFLRSQGTADITPEVTLLSLGEER 148
           AF +SQGTA ITPEVTLLS GEER
Sbjct: 259 AFHQSQGTAGITPEVTLLSPGEER 282

The following BLAST results are available for this feature:
BLAST of Cucsat.G8369 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G8369 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031790.14.87e-7384.72serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa][more]
TYJ97341.15.61e-7284.03serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa][more]
KAG7036969.12.13e-1043.55Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cucsat.G8369 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SM072.36e-7384.72Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BFE72.71e-7284.03Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G8369.T1Cucsat.G8369.T1mRNA
Cucsat.G8369.T2Cucsat.G8369.T2mRNA
Cucsat.G8369.T5Cucsat.G8369.T5mRNA
Cucsat.G8369.T7Cucsat.G8369.T7mRNA
Cucsat.G8369.T6Cucsat.G8369.T6mRNA
Cucsat.G8369.T9Cucsat.G8369.T9mRNA
Cucsat.G8369.T8Cucsat.G8369.T8mRNA
Cucsat.G8369.T11Cucsat.G8369.T11mRNA
Cucsat.G8369.T10Cucsat.G8369.T10mRNA
Cucsat.G8369.T20Cucsat.G8369.T20mRNA
Cucsat.G8369.T22Cucsat.G8369.T22mRNA
Cucsat.G8369.T24Cucsat.G8369.T24mRNA
Cucsat.G8369.T26Cucsat.G8369.T26mRNA
Cucsat.G8369.T29Cucsat.G8369.T29mRNA
Cucsat.G8369.T30Cucsat.G8369.T30mRNA
Cucsat.G8369.T3Cucsat.G8369.T3mRNA
Cucsat.G8369.T4Cucsat.G8369.T4mRNA
Cucsat.G8369.T19Cucsat.G8369.T19mRNA
Cucsat.G8369.T12Cucsat.G8369.T12mRNA
Cucsat.G8369.T15Cucsat.G8369.T15mRNA
Cucsat.G8369.T14Cucsat.G8369.T14mRNA
Cucsat.G8369.T17Cucsat.G8369.T17mRNA
Cucsat.G8369.T16Cucsat.G8369.T16mRNA
Cucsat.G8369.T21Cucsat.G8369.T21mRNA
Cucsat.G8369.T23Cucsat.G8369.T23mRNA
Cucsat.G8369.T31Cucsat.G8369.T31mRNA
Cucsat.G8369.T28Cucsat.G8369.T28mRNA
Cucsat.G8369.T13Cucsat.G8369.T13mRNA
Cucsat.G8369.T25Cucsat.G8369.T25mRNA
Cucsat.G8369.T27Cucsat.G8369.T27mRNA
Cucsat.G8369.T18Cucsat.G8369.T18mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048026 positive regulation of mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding